Wall clock time and date at job start Thu Apr 9 2020 15:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34001 * 124.92200 * 2 1 4 4 C 1.46781 * 106.18255 * 179.97438 * 3 2 1 5 5 C 1.39409 * 134.36783 * 180.02562 * 4 3 2 6 6 C 1.36735 * 119.71733 * 179.73108 * 5 4 3 7 7 C 1.38743 * 120.41397 * 0.52034 * 6 5 4 8 8 C 1.37852 * 120.68598 * 359.45611 * 7 6 5 9 9 C 1.50700 * 120.08964 * 180.29842 * 8 7 6 10 10 C 1.50696 * 115.54981 * 99.92306 * 9 8 7 11 11 H 1.08004 * 120.00008 * 143.59290 * 10 9 8 12 12 C 1.37885 * 119.99933 * 323.59310 * 10 9 8 13 13 N 1.31515 * 119.99870 * 352.41500 * 12 10 9 14 14 Si 1.86796 * 119.99729 * 172.41948 * 12 10 9 15 15 H 1.48501 * 109.47498 * 60.00002 * 14 12 10 16 16 H 1.48501 * 109.46935 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47491 * 299.99607 * 14 12 10 18 18 C 1.52998 * 117.49830 * 314.21653 * 9 8 7 19 19 C 1.52999 * 117.49698 * 245.59298 * 9 8 7 20 20 C 1.38937 * 119.81513 * 0.27932 * 8 7 6 21 21 O 1.34444 * 124.92522 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.46941 * 90.00061 * 1 2 3 23 23 H 1.08993 * 109.47205 * 210.00227 * 1 2 3 24 24 H 1.09001 * 109.47335 * 330.00189 * 1 2 3 25 25 H 1.08000 * 126.90725 * 359.97438 * 3 2 1 26 26 H 1.07999 * 120.14158 * 359.95203 * 5 4 3 27 27 H 1.07997 * 119.79566 * 180.25255 * 6 5 4 28 28 H 1.08001 * 119.65829 * 179.73016 * 7 6 5 29 29 H 0.96999 * 119.99293 * 174.98284 * 13 12 10 30 30 H 1.08995 * 117.50179 * 359.97438 * 18 9 8 31 31 H 1.09004 * 117.49846 * 145.02287 * 18 9 8 32 32 H 1.09000 * 117.49452 * 214.97835 * 19 9 8 33 33 H 1.08996 * 117.50313 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2741 1.0987 0.0000 4 6 3.6641 0.6272 0.0006 5 6 4.9074 1.2577 0.0014 6 6 6.0491 0.5052 0.0074 7 6 5.9771 -0.8803 0.0019 8 6 4.7567 -1.5214 0.0016 9 6 4.6942 -3.0271 0.0024 10 6 4.4323 -3.6660 1.3418 11 1 3.8201 -4.5534 1.4064 12 6 4.9744 -3.1177 2.4850 13 7 5.8380 -2.1299 2.3948 14 14 4.4821 -3.7779 4.1616 15 1 4.8374 -5.2171 4.2507 16 1 5.2007 -3.0247 5.2206 17 1 3.0175 -3.6173 4.3464 18 6 5.6110 -3.7727 -0.9694 19 6 4.1053 -3.7103 -1.2335 20 6 3.5845 -0.7754 0.0009 21 8 2.2767 -1.1023 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.9373 2.1249 -0.0004 26 1 4.9686 2.3360 0.0008 27 1 7.0129 0.9924 0.0121 28 1 6.8866 -1.4627 0.0024 29 1 6.1639 -1.6958 3.1987 30 1 6.2591 -3.1742 -1.6095 31 1 6.0251 -4.7256 -0.6399 32 1 3.5288 -4.6221 -1.0776 33 1 3.7626 -3.0708 -2.0469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260105310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:13:19 Heat of formation + Delta-G solvation = 34.565702 kcal Electronic energy + Delta-G solvation = -17297.589180 eV Core-core repulsion = 14675.738398 eV Total energy + Delta-G solvation = -2621.850781 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.12261 -39.36318 -37.36276 -34.16964 -33.84146 -31.74643 -30.80100 -27.79815 -27.46947 -23.99495 -23.35473 -22.62673 -21.68297 -20.80803 -18.62342 -17.94206 -17.00085 -16.82827 -16.58602 -16.09312 -15.57538 -14.92842 -14.44186 -14.10494 -13.80601 -13.78382 -13.63197 -13.09641 -12.94825 -12.89275 -12.73801 -12.56180 -12.41422 -12.15413 -12.07483 -11.29556 -11.15972 -10.73255 -10.50488 -10.14603 -9.15968 -8.79704 -7.92774 -6.19640 0.34485 0.77022 1.37081 1.38674 1.45487 1.65038 2.12973 2.39699 2.99114 3.13551 3.58296 3.69991 3.95385 4.24076 4.32767 4.44711 4.49106 4.55494 4.61077 4.71220 4.74357 4.80761 4.87322 4.98866 5.06240 5.10333 5.14955 5.40504 5.48628 5.60626 5.66943 5.79020 5.84731 5.99709 6.16128 6.33905 6.57736 6.78214 7.40122 8.90608 Molecular weight = 242.10amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.010542 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.153073 B = 2655.492990 C = 2906.535266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.004 3.996 3 C -0.223 4.223 4 C -0.162 4.162 5 C -0.105 4.105 6 C -0.141 4.141 7 C -0.052 4.052 8 C 0.011 3.989 9 C 0.050 3.950 10 C -0.512 4.512 11 H 0.049 0.951 12 C 0.032 3.968 13 N -0.879 5.879 14 Si 0.943 3.057 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.280 1.280 18 C -0.189 4.189 19 C -0.188 4.188 20 C 0.027 3.973 21 O -0.215 6.215 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.115 0.885 25 H 0.183 0.817 26 H 0.146 0.854 27 H 0.144 0.856 28 H 0.112 0.888 29 H 0.259 0.741 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.618 7.505 -4.668 10.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.043 4.043 3 C -0.242 4.242 4 C -0.163 4.163 5 C -0.122 4.122 6 C -0.159 4.159 7 C -0.070 4.070 8 C 0.010 3.990 9 C 0.050 3.950 10 C -0.549 4.549 11 H 0.068 0.932 12 C -0.170 4.170 13 N -0.514 5.514 14 Si 0.768 3.232 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.227 4.227 19 C -0.226 4.226 20 C -0.019 4.019 21 O -0.117 6.117 22 H 0.119 0.881 23 H 0.093 0.907 24 H 0.133 0.867 25 H 0.200 0.800 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.131 0.869 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.535 7.311 -4.544 10.234 hybrid contribution 0.068 -0.585 1.096 1.244 sum -5.467 6.727 -3.448 9.328 Atomic orbital electron populations 1.20565 0.81940 1.05215 1.05017 1.23282 0.95958 0.83716 1.01359 1.22456 0.89552 1.00129 1.12052 1.20288 0.95751 0.92527 1.07754 1.20313 0.89657 1.00276 1.02001 1.20928 0.99040 0.93292 1.02599 1.20468 0.95614 0.94151 0.96791 1.18192 0.88698 0.94067 0.98038 1.17804 0.99689 0.87798 0.89740 1.20626 1.31267 1.12046 0.90945 0.93234 1.25573 0.94010 0.95708 1.01749 1.70159 1.28608 1.23611 1.29070 0.85860 0.78163 0.78886 0.80265 1.19369 1.20591 1.20588 1.23010 0.91824 1.02622 1.05264 1.22829 0.96255 1.02548 1.00927 1.19702 0.82805 0.94006 1.05408 1.83945 1.15824 1.35291 1.76668 0.88050 0.90683 0.86655 0.79971 0.83650 0.83800 0.86950 0.93127 0.89989 0.90381 0.90171 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.39 71.24 0.74 -0.86 16 2 C 0.00 0.15 7.23 24.72 0.18 0.33 16 3 C -0.22 -7.68 11.01 23.54 0.26 -7.43 16 4 C -0.16 -6.84 6.40 -20.22 -0.13 -6.97 16 5 C -0.10 -3.94 10.05 22.20 0.22 -3.71 16 6 C -0.14 -5.50 9.98 22.04 0.22 -5.28 16 7 C -0.05 -2.40 7.39 22.30 0.16 -2.24 16 8 C 0.01 0.55 3.76 -19.79 -0.07 0.47 16 9 C 0.05 2.61 1.88 -53.68 -0.10 2.51 16 10 C -0.51 -29.21 9.04 25.60 0.23 -28.97 16 11 H 0.05 2.84 7.83 -2.91 -0.02 2.82 16 12 C 0.03 1.80 5.29 84.66 0.45 2.24 16 13 N -0.88 -49.45 10.31 21.45 0.22 -49.23 16 14 Si 0.94 44.50 29.55 68.60 2.03 46.53 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 18 C -0.19 -8.75 9.54 30.59 0.29 -8.46 16 19 C -0.19 -8.67 9.91 30.60 0.30 -8.36 16 20 C 0.03 1.34 7.09 22.98 0.16 1.50 16 21 O -0.21 -10.03 10.58 -8.89 -0.09 -10.13 16 22 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.18 4.62 8.06 -2.91 -0.02 4.60 16 26 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 27 H 0.14 4.55 8.06 -2.91 -0.02 4.52 16 28 H 0.11 5.31 7.90 -2.91 -0.02 5.29 16 29 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 30 H 0.08 3.49 8.00 -2.39 -0.02 3.47 16 31 H 0.08 3.58 8.14 -2.38 -0.02 3.56 16 32 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 33 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -66.47 285.78 6.17 -60.30 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.10 Total: 17.76 kcal Atomic # 6 Polarization: -68.14 SS G_CDS: 2.92 Total: -65.23 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.22 Total: -49.23 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.09 Total: -10.13 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -66.47 6.17 -60.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260105310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.862 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds