Wall clock time and date at job start Thu Apr 9 2020 15:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.36014 * 116.99807 * 179.97438 * 3 2 1 5 5 C 1.38823 * 120.07148 * 269.73220 * 4 3 2 6 6 F 1.35105 * 120.03670 * 359.97438 * 5 4 3 7 7 C 1.38377 * 119.93060 * 179.70038 * 5 4 3 8 8 C 1.38253 * 120.06388 * 0.57448 * 7 5 4 9 9 C 1.50704 * 119.92633 * 179.74641 * 8 7 5 10 10 C 1.50698 * 109.47021 * 269.97523 * 9 8 7 11 11 H 1.08000 * 119.99984 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99926 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00267 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00395 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46819 * 90.00244 * 14 12 10 16 16 H 1.48494 * 109.47343 * 210.00642 * 14 12 10 17 17 H 1.48503 * 109.46886 * 330.00688 * 14 12 10 18 18 C 1.38253 * 120.14332 * 359.71748 * 8 7 5 19 19 C 1.38372 * 120.06420 * 359.97438 * 18 8 7 20 20 F 1.35103 * 120.03280 * 180.02562 * 19 18 8 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 24 24 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 25 25 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 26 26 H 1.07997 * 119.97053 * 180.29627 * 7 5 4 27 27 H 1.08999 * 109.47353 * 29.97909 * 9 8 7 28 28 H 1.09001 * 109.47320 * 149.97528 * 9 8 7 29 29 H 0.96999 * 120.00493 * 179.97438 * 13 12 10 30 30 H 1.07995 * 119.96259 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3547 1.5256 0.0005 5 6 4.0431 1.6225 1.2022 6 9 3.3743 1.5404 2.3732 7 6 5.4158 1.7976 1.1994 8 6 6.1000 1.8880 0.0014 9 6 7.5942 2.0844 0.0020 10 6 7.9070 3.5586 0.0020 11 1 7.1041 4.2810 0.0013 12 6 9.2181 3.9851 0.0020 13 7 9.4912 5.2716 0.0025 14 14 10.6068 2.7357 0.0026 15 1 10.9749 2.4041 -1.3974 16 1 11.7856 3.3061 0.7026 17 1 10.1637 1.5034 0.7029 18 6 5.4165 1.7979 -1.1970 19 6 4.0448 1.6164 -1.2007 20 9 3.3776 1.5280 -2.3722 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 5.9525 1.8683 2.1338 27 1 8.0211 1.6223 0.8921 28 1 8.0218 1.6223 -0.8878 29 1 10.4136 5.5716 0.0028 30 1 5.9540 1.8685 -2.1310 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308791109.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:12:35 Heat of formation + Delta-G solvation = -116.031871 kcal Electronic energy + Delta-G solvation = -16919.094244 eV Core-core repulsion = 13736.483532 eV Total energy + Delta-G solvation = -3182.610712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 242.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.72899 -48.69309 -39.35516 -37.62027 -33.38268 -31.98546 -30.66170 -30.01993 -27.31278 -23.61868 -22.78774 -22.74289 -20.80508 -18.10019 -17.34288 -17.06230 -16.91938 -15.98288 -15.49918 -15.12148 -14.98047 -14.81150 -14.41146 -14.31078 -13.56190 -12.94574 -12.84105 -12.47535 -12.43507 -12.11874 -11.63170 -11.50228 -11.47095 -11.35797 -10.65215 -10.29627 -10.08909 -9.89490 -9.52851 -8.70472 -8.46003 -8.15538 -6.18829 -4.20806 1.20005 1.28797 3.20862 3.29679 3.29857 3.39474 3.77728 4.11019 4.30528 4.68913 4.87094 5.04327 5.13266 5.15560 5.17639 5.23847 5.40318 5.58090 5.74873 5.86344 5.96665 6.04954 6.25555 6.37983 6.52547 6.75235 6.91744 7.17790 7.49259 7.53689 8.33509 8.84841 9.39136 10.93615 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.040141 B = 0.005736 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.366773 B = 4880.280003 C = 5179.000694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.319 6.319 4 C -0.002 4.002 5 C 0.110 3.890 6 F -0.132 7.132 7 C -0.153 4.153 8 C 0.025 3.975 9 C 0.014 3.986 10 C -0.522 4.522 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.894 5.894 14 Si 0.878 3.122 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.264 1.264 18 C -0.153 4.153 19 C 0.110 3.890 20 F -0.132 7.132 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.146 0.854 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.267 0.733 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 -11.485 0.019 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.236 6.236 4 C -0.048 4.048 5 C 0.090 3.910 6 F -0.110 7.110 7 C -0.172 4.172 8 C 0.025 3.975 9 C -0.023 4.023 10 C -0.560 4.560 11 H 0.095 0.905 12 C -0.129 4.129 13 N -0.531 5.531 14 Si 0.704 3.296 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.172 4.172 19 C 0.090 3.910 20 F -0.110 7.110 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.164 0.836 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.666 -11.220 0.022 16.186 hybrid contribution 0.662 -0.592 -0.021 0.888 sum -11.004 -11.812 0.001 16.143 Atomic orbital electron populations 1.21732 0.93062 1.02377 1.03384 1.22800 0.95729 0.82695 1.00683 1.86157 1.16316 1.26970 1.94165 1.18323 0.84303 1.11501 0.90643 1.17729 0.90096 1.03016 0.80152 1.91476 1.80677 1.93622 1.45235 1.21131 0.91004 1.04358 1.00699 1.20064 0.98690 0.88596 0.90176 1.18906 0.85906 0.99154 0.98359 1.20843 0.93762 0.88913 1.52495 0.90523 1.24972 0.98612 0.95176 0.94174 1.69884 1.19782 1.13763 1.49708 0.86813 0.81988 0.81995 0.78780 1.19995 1.21074 1.18836 1.21132 0.91041 1.04350 1.00694 1.17734 0.90129 1.03006 0.80151 1.91475 1.80758 1.93585 1.45197 0.90754 0.91613 0.91619 0.92886 0.92885 0.83645 0.94473 0.94910 0.92344 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.69 6.78 37.16 0.25 0.95 16 3 O -0.32 -5.26 9.79 -19.79 -0.19 -5.45 16 4 C 0.00 -0.04 5.74 -39.15 -0.22 -0.26 16 5 C 0.11 1.92 7.31 -39.31 -0.29 1.63 16 6 F -0.13 -2.24 17.11 2.25 0.04 -2.20 16 7 C -0.15 -2.74 9.67 -39.52 -0.38 -3.13 16 8 C 0.03 0.48 5.07 -104.61 -0.53 -0.05 16 9 C 0.01 0.30 4.17 -29.03 -0.12 0.18 16 10 C -0.52 -13.96 9.65 -34.44 -0.33 -14.30 16 11 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 13 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 14 Si 0.88 20.15 27.47 -169.99 -4.67 15.49 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 18 C -0.15 -2.74 9.67 -39.53 -0.38 -3.13 16 19 C 0.11 1.91 7.31 -39.31 -0.29 1.62 16 20 F -0.13 -2.24 17.11 2.25 0.04 -2.20 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.15 2.44 8.06 -52.49 -0.42 2.01 16 27 H 0.04 0.79 7.14 -51.93 -0.37 0.42 16 28 H 0.03 0.68 7.51 -51.93 -0.39 0.29 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.15 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 275.08 15.07 4.15 4.15 Total: -1.00 -29.02 275.08 -5.18 -34.20 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.31 Total: -2.75 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.01 Total: -15.61 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.77 Total: -25.62 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.19 Total: -5.45 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.08 Total: -4.40 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.02 -5.18 -34.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308791109.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.829 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds