Wall clock time and date at job start Thu Apr 9 2020 15:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00047 * 2 1 4 4 C 1.52993 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47728 * 173.92869 * 4 3 2 6 6 O 1.42900 * 109.47131 * 293.93285 * 4 3 2 7 7 C 1.42906 * 114.00075 * 235.65640 * 6 4 3 8 8 C 1.52999 * 109.46970 * 180.75276 * 7 6 4 9 9 C 1.50696 * 115.55442 * 39.92738 * 8 7 6 10 10 H 1.08007 * 119.99498 * 264.93665 * 9 8 7 11 11 C 1.37873 * 120.00190 * 84.93456 * 9 8 7 12 12 N 1.31510 * 119.99855 * 1.14116 * 11 9 8 13 13 Si 1.86803 * 119.99993 * 181.14663 * 11 9 8 14 14 H 1.48508 * 109.46954 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47466 * 119.99776 * 13 11 9 16 16 H 1.48501 * 109.47111 * 239.99954 * 13 11 9 17 17 C 1.53005 * 117.49360 * 254.21566 * 8 7 6 18 18 C 1.52999 * 117.49533 * 185.59690 * 8 7 6 19 19 C 1.53011 * 109.47392 * 53.92831 * 4 3 2 20 20 C 1.52997 * 109.47231 * 182.04391 * 19 4 3 21 21 C 1.52995 * 109.46634 * 62.04533 * 19 4 3 22 22 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47077 * 300.00011 * 1 2 3 24 24 H 1.08997 * 109.47226 * 59.99615 * 1 2 3 25 25 H 1.08993 * 109.47127 * 60.00024 * 3 2 1 26 26 H 1.08998 * 109.46943 * 300.00296 * 3 2 1 27 27 H 1.08999 * 109.46530 * 300.74747 * 7 6 4 28 28 H 1.08990 * 109.47097 * 60.74738 * 7 6 4 29 29 H 0.97003 * 119.99391 * 180.02562 * 12 11 9 30 30 H 1.08994 * 117.50345 * 0.02562 * 17 8 7 31 31 H 1.09004 * 117.49631 * 145.02585 * 17 8 7 32 32 H 1.09004 * 117.50110 * 214.97741 * 18 8 7 33 33 H 1.09004 * 117.50309 * 359.97100 * 18 8 7 34 34 H 1.08995 * 109.46900 * 302.04693 * 19 4 3 35 35 H 1.08994 * 109.47464 * 302.03727 * 20 19 4 36 36 H 1.09005 * 109.46927 * 62.03821 * 20 19 4 37 37 H 1.08999 * 109.47206 * 182.03063 * 20 19 4 38 38 H 1.08999 * 109.46858 * 178.37754 * 21 19 4 39 39 H 1.08995 * 109.47600 * 298.37929 * 21 19 4 40 40 H 1.09011 * 109.47422 * 58.38089 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9783 2.1747 -0.1093 6 8 3.9676 0.6020 1.2305 7 6 4.9213 1.3916 1.9441 8 6 5.3247 0.6660 3.2292 9 6 5.5039 -0.8251 3.1049 10 1 4.6888 -1.4894 3.3517 11 6 6.7084 -1.3414 2.6762 12 7 7.7080 -0.5336 2.3972 13 14 6.9202 -3.1881 2.4915 14 1 5.6559 -3.8713 2.8659 15 1 7.2581 -3.5091 1.0815 16 1 8.0152 -3.6521 3.3808 17 6 4.7669 1.2034 4.5487 18 6 6.2428 1.4092 4.2016 19 6 3.9764 0.2979 -1.1670 20 6 5.4974 0.1356 -1.1376 21 6 3.5582 0.9473 -2.4877 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6885 1.8464 -0.8900 27 1 5.8030 1.5462 1.3220 28 1 4.4798 2.3561 2.1946 29 1 8.5552 -0.8969 2.0953 30 1 4.1123 2.0736 4.5012 31 1 4.5293 0.4784 5.3272 32 1 6.9762 0.8196 4.7518 33 1 6.5598 2.4149 3.9256 34 1 3.5047 -0.6807 -1.0779 35 1 5.9687 1.1170 -1.1902 36 1 5.7921 -0.3598 -0.2124 37 1 5.8151 -0.4663 -1.9890 38 1 3.8976 0.3300 -3.3195 39 1 2.4725 1.0367 -2.5209 40 1 4.0068 1.9379 -2.5637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404072889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:13:45 Heat of formation + Delta-G solvation = -78.628007 kcal Electronic energy + Delta-G solvation = -18812.384724 eV Core-core repulsion = 16014.149670 eV Total energy + Delta-G solvation = -2798.235054 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.62254 -37.00269 -35.87478 -33.85921 -31.76517 -29.19708 -26.63125 -26.26222 -25.60245 -24.84080 -22.52841 -21.00819 -19.67557 -18.87098 -16.66125 -15.91617 -15.78136 -15.33210 -14.98648 -14.49784 -14.25845 -13.93262 -13.33774 -12.94065 -12.86719 -12.35403 -12.04808 -11.99663 -11.71763 -11.36014 -11.27187 -10.89930 -10.88031 -10.67693 -10.56563 -10.35710 -10.28943 -10.09630 -9.97968 -9.42421 -9.27409 -8.86020 -8.51264 -8.26384 -7.90625 -5.88634 -3.90042 3.38617 3.46504 3.53063 4.06756 4.49355 4.57832 5.14838 5.24716 5.39398 5.41088 5.43139 5.46286 5.53566 5.62178 5.72406 5.75400 5.80113 5.87452 6.05767 6.17346 6.24619 6.33485 6.35006 6.43559 6.46456 6.57876 6.75366 6.80169 6.89252 6.96214 7.14938 7.17273 7.42329 7.49003 7.58764 8.04522 8.31853 8.64433 9.09070 9.73185 11.20955 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.008411 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.432685 B = 3328.224307 C = 3712.609726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.057 3.943 4 C 0.093 3.907 5 H 0.063 0.937 6 O -0.339 6.339 7 C 0.106 3.894 8 C 0.045 3.955 9 C -0.465 4.465 10 H 0.059 0.941 11 C 0.069 3.931 12 N -0.887 5.887 13 Si 0.886 3.114 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.288 1.288 17 C -0.213 4.213 18 C -0.150 4.150 19 C -0.100 4.100 20 C -0.146 4.146 21 C -0.143 4.143 22 H 0.082 0.918 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.010 0.990 29 H 0.256 0.744 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.130 5.081 -6.971 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.020 4.020 4 C 0.033 3.967 5 H 0.081 0.919 6 O -0.257 6.257 7 C 0.030 3.970 8 C 0.044 3.956 9 C -0.503 4.503 10 H 0.077 0.923 11 C -0.132 4.132 12 N -0.525 5.525 13 Si 0.714 3.286 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.214 1.214 17 C -0.250 4.250 18 C -0.188 4.188 19 C -0.119 4.119 20 C -0.203 4.203 21 C -0.201 4.201 22 H 0.100 0.900 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.888 4.728 -6.959 12.238 hybrid contribution 0.099 -0.359 -0.264 0.456 sum -8.789 4.369 -7.223 12.186 Atomic orbital electron populations 1.22693 0.82346 1.02346 0.99222 1.88036 1.18348 1.27253 1.95126 1.22909 0.94580 0.85113 0.99379 1.22075 0.90949 0.96139 0.87502 0.91897 1.88192 1.60400 1.45768 1.31331 1.22178 0.89911 0.90478 0.94471 1.18750 0.97278 0.94930 0.84608 1.20305 0.97479 0.88742 1.43755 0.92266 1.24889 0.95884 0.97230 0.95190 1.70013 1.02780 1.33830 1.45863 0.86631 0.77912 0.86446 0.77617 1.19718 1.21059 1.21412 1.23068 0.96825 1.01832 1.03283 1.22492 0.91635 0.99053 1.05595 1.21303 0.97042 1.00636 0.92923 1.21801 0.94358 1.01085 1.03096 1.21857 1.00591 1.00274 0.97359 0.89968 0.94446 0.94853 0.93388 0.93175 0.93502 0.97160 0.93456 0.91962 0.90459 0.89619 0.92167 0.89770 0.93845 0.89863 0.93835 0.92838 0.93070 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.26 9.72 -38.99 -0.38 -6.64 16 3 C 0.06 0.89 5.34 37.15 0.20 1.08 16 4 C 0.09 1.65 2.24 -26.73 -0.06 1.59 16 5 H 0.06 1.04 7.61 -51.93 -0.40 0.64 16 6 O -0.34 -7.71 8.63 -38.99 -0.34 -8.05 16 7 C 0.11 2.45 5.64 37.16 0.21 2.66 16 8 C 0.04 1.14 1.83 -155.66 -0.28 0.85 16 9 C -0.46 -13.09 8.24 -34.44 -0.28 -13.38 16 10 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 11 C 0.07 1.94 5.42 -17.82 -0.10 1.84 16 12 N -0.89 -25.18 12.73 55.43 0.71 -24.47 16 13 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 14 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 C -0.21 -4.83 9.88 -26.73 -0.26 -5.09 16 18 C -0.15 -3.59 9.26 -26.73 -0.25 -3.84 16 19 C -0.10 -1.72 2.54 -90.62 -0.23 -1.95 16 20 C -0.15 -2.73 8.73 37.16 0.32 -2.41 16 21 C -0.14 -1.92 8.85 37.15 0.33 -1.59 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.64 6.84 -51.93 -0.36 0.28 16 27 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 28 H 0.01 0.22 7.95 -51.93 -0.41 -0.20 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 31 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.60 7.46 -51.93 -0.39 1.21 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.93 7.69 -51.93 -0.40 1.53 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 40 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -29.85 326.88 -6.72 -36.57 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.33 Total: -0.56 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 0.71 Total: -18.73 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.71 Total: -24.47 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.72 Total: -14.69 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.85 -6.72 -36.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.057 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds