Wall clock time and date at job start Thu Apr 9 2020 15:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00047 * 2 1 4 4 C 1.52993 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47728 * 173.92869 * 4 3 2 6 6 O 1.42900 * 109.47131 * 293.93285 * 4 3 2 7 7 C 1.42906 * 114.00075 * 235.65640 * 6 4 3 8 8 C 1.52999 * 109.46970 * 180.75276 * 7 6 4 9 9 C 1.50696 * 115.55442 * 39.92738 * 8 7 6 10 10 H 1.08007 * 119.99498 * 264.93665 * 9 8 7 11 11 C 1.37873 * 120.00190 * 84.93456 * 9 8 7 12 12 N 1.31510 * 119.99855 * 1.14116 * 11 9 8 13 13 Si 1.86803 * 119.99993 * 181.14663 * 11 9 8 14 14 H 1.48508 * 109.46954 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47466 * 119.99776 * 13 11 9 16 16 H 1.48501 * 109.47111 * 239.99954 * 13 11 9 17 17 C 1.53005 * 117.49360 * 254.21566 * 8 7 6 18 18 C 1.52999 * 117.49533 * 185.59690 * 8 7 6 19 19 C 1.53011 * 109.47392 * 53.92831 * 4 3 2 20 20 C 1.52997 * 109.47231 * 182.04391 * 19 4 3 21 21 C 1.52995 * 109.46634 * 62.04533 * 19 4 3 22 22 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47077 * 300.00011 * 1 2 3 24 24 H 1.08997 * 109.47226 * 59.99615 * 1 2 3 25 25 H 1.08993 * 109.47127 * 60.00024 * 3 2 1 26 26 H 1.08998 * 109.46943 * 300.00296 * 3 2 1 27 27 H 1.08999 * 109.46530 * 300.74747 * 7 6 4 28 28 H 1.08990 * 109.47097 * 60.74738 * 7 6 4 29 29 H 0.97003 * 119.99391 * 180.02562 * 12 11 9 30 30 H 1.08994 * 117.50345 * 0.02562 * 17 8 7 31 31 H 1.09004 * 117.49631 * 145.02585 * 17 8 7 32 32 H 1.09004 * 117.50110 * 214.97741 * 18 8 7 33 33 H 1.09004 * 117.50309 * 359.97100 * 18 8 7 34 34 H 1.08995 * 109.46900 * 302.04693 * 19 4 3 35 35 H 1.08994 * 109.47464 * 302.03727 * 20 19 4 36 36 H 1.09005 * 109.46927 * 62.03821 * 20 19 4 37 37 H 1.08999 * 109.47206 * 182.03063 * 20 19 4 38 38 H 1.08999 * 109.46858 * 178.37754 * 21 19 4 39 39 H 1.08995 * 109.47600 * 298.37929 * 21 19 4 40 40 H 1.09011 * 109.47422 * 58.38089 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9783 2.1747 -0.1093 6 8 3.9676 0.6020 1.2305 7 6 4.9213 1.3916 1.9441 8 6 5.3247 0.6660 3.2292 9 6 5.5039 -0.8251 3.1049 10 1 4.6888 -1.4894 3.3517 11 6 6.7084 -1.3414 2.6762 12 7 7.7080 -0.5336 2.3972 13 14 6.9202 -3.1881 2.4915 14 1 5.6559 -3.8713 2.8659 15 1 7.2581 -3.5091 1.0815 16 1 8.0152 -3.6521 3.3808 17 6 4.7669 1.2034 4.5487 18 6 6.2428 1.4092 4.2016 19 6 3.9764 0.2979 -1.1670 20 6 5.4974 0.1356 -1.1376 21 6 3.5582 0.9473 -2.4877 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6886 1.8464 0.8899 26 1 1.6885 1.8464 -0.8900 27 1 5.8030 1.5462 1.3220 28 1 4.4798 2.3561 2.1946 29 1 8.5552 -0.8969 2.0953 30 1 4.1123 2.0736 4.5012 31 1 4.5293 0.4784 5.3272 32 1 6.9762 0.8196 4.7518 33 1 6.5598 2.4149 3.9256 34 1 3.5047 -0.6807 -1.0779 35 1 5.9687 1.1170 -1.1902 36 1 5.7921 -0.3598 -0.2124 37 1 5.8151 -0.4663 -1.9890 38 1 3.8976 0.3300 -3.3195 39 1 2.4725 1.0367 -2.5209 40 1 4.0068 1.9379 -2.5637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404072889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:13:45 Heat of formation + Delta-G solvation = -95.969785 kcal Electronic energy + Delta-G solvation = -18813.136720 eV Core-core repulsion = 16014.149670 eV Total energy + Delta-G solvation = -2798.987050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.167 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.03838 -38.56394 -37.44160 -35.35137 -33.89814 -30.49366 -28.07779 -27.72445 -27.08276 -26.61938 -23.85739 -22.87583 -21.29710 -20.57594 -18.33184 -17.53311 -17.07821 -16.75675 -16.47244 -16.32202 -15.81551 -15.62279 -14.69763 -14.53136 -14.44213 -13.84112 -13.69902 -13.15395 -13.10673 -12.89587 -12.85747 -12.78012 -12.42823 -12.39595 -12.16571 -12.09866 -11.91708 -11.67169 -11.40432 -11.21825 -10.84506 -10.49481 -10.35234 -10.17731 -9.76313 -8.03540 -6.09250 1.37483 1.40804 1.51409 2.46736 2.91447 3.07548 3.26909 3.55795 3.85824 4.00231 4.18929 4.34407 4.39888 4.45248 4.49512 4.53119 4.59090 4.62167 4.64000 4.67558 4.79677 4.87051 4.89733 4.95248 4.98467 5.05377 5.10818 5.13808 5.26150 5.31094 5.51048 5.59195 5.63680 5.67559 5.84643 6.34233 6.46216 6.80419 6.93740 7.55655 9.05172 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.008411 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.432685 B = 3328.224307 C = 3712.609726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.061 3.939 4 C 0.081 3.919 5 H 0.078 0.922 6 O -0.370 6.370 7 C 0.120 3.880 8 C 0.009 3.991 9 C -0.479 4.479 10 H 0.037 0.963 11 C 0.032 3.968 12 N -0.905 5.905 13 Si 0.935 3.065 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.279 1.279 17 C -0.191 4.191 18 C -0.149 4.149 19 C -0.097 4.097 20 C -0.138 4.138 21 C -0.134 4.134 22 H 0.088 0.912 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.026 0.974 28 H 0.035 0.965 29 H 0.256 0.744 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 6.200 -8.108 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.015 4.015 4 C 0.022 3.978 5 H 0.096 0.904 6 O -0.288 6.288 7 C 0.043 3.957 8 C 0.009 3.991 9 C -0.517 4.517 10 H 0.055 0.945 11 C -0.167 4.167 12 N -0.544 5.544 13 Si 0.762 3.238 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.205 1.205 17 C -0.228 4.228 18 C -0.186 4.186 19 C -0.115 4.115 20 C -0.196 4.196 21 C -0.191 4.191 22 H 0.107 0.893 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.224 5.848 -8.094 14.292 hybrid contribution 0.463 -0.725 0.083 0.864 sum -9.762 5.124 -8.012 13.628 Atomic orbital electron populations 1.22889 0.80151 1.03354 1.00672 1.87988 1.20873 1.28233 1.95438 1.22897 0.92592 0.85010 1.01042 1.22424 0.92973 0.96641 0.85715 0.90390 1.88142 1.60184 1.47108 1.33415 1.21902 0.89594 0.91081 0.93083 1.18943 0.99405 0.93979 0.86767 1.20414 0.96928 0.90444 1.43936 0.94510 1.25415 0.95755 1.00479 0.95083 1.70080 1.02925 1.34985 1.46382 0.85865 0.77719 0.82628 0.77613 1.20050 1.20839 1.20506 1.23073 0.96250 1.02272 1.01247 1.22386 0.91890 0.99309 1.05045 1.21255 0.95323 0.99870 0.95100 1.21694 0.96045 1.01018 1.00825 1.21774 1.01672 1.00747 0.94905 0.89342 0.93949 0.92330 0.93375 0.89654 0.95612 0.94699 0.93472 0.88993 0.90852 0.91994 0.90385 0.92288 0.93133 0.95074 0.92477 0.91925 0.91536 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -13.19 9.72 -145.39 -1.41 -14.61 16 3 C 0.06 1.75 5.34 71.98 0.38 2.14 16 4 C 0.08 2.79 2.24 30.60 0.07 2.85 16 5 H 0.08 2.42 7.61 -2.39 -0.02 2.40 16 6 O -0.37 -16.91 8.63 -145.39 -1.25 -18.17 16 7 C 0.12 5.53 5.64 71.98 0.41 5.93 16 8 C 0.01 0.48 1.83 -52.93 -0.10 0.38 16 9 C -0.48 -27.70 8.24 25.60 0.21 -27.49 16 10 H 0.04 2.22 7.81 -2.91 -0.02 2.20 16 11 C 0.03 1.83 5.42 84.65 0.46 2.29 16 12 N -0.90 -52.46 12.73 21.45 0.27 -52.19 16 13 Si 0.93 46.08 29.54 68.60 2.03 48.11 16 14 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 15 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 17 C -0.19 -8.47 9.88 30.60 0.30 -8.17 16 18 C -0.15 -7.09 9.26 30.59 0.28 -6.80 16 19 C -0.10 -3.23 2.54 -10.79 -0.03 -3.26 16 20 C -0.14 -5.21 8.73 71.98 0.63 -4.58 16 21 C -0.13 -3.17 8.85 71.98 0.64 -2.54 16 22 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.83 6.84 -2.39 -0.02 1.81 16 27 H 0.03 1.26 7.93 -2.39 -0.02 1.25 16 28 H 0.04 1.40 7.95 -2.39 -0.02 1.38 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.09 3.51 8.08 -2.39 -0.02 3.49 16 31 H 0.07 3.27 8.14 -2.38 -0.02 3.25 16 32 H 0.06 3.21 8.14 -2.38 -0.02 3.19 16 33 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 34 H 0.06 2.26 7.46 -2.39 -0.02 2.24 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.03 1.47 7.69 -2.38 -0.02 1.46 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.39 6.70 -2.39 -0.02 1.37 16 40 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -65.66 326.88 5.11 -60.55 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.97 Total: 13.72 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 4.50 Total: -37.42 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 0.27 Total: -52.19 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -2.67 Total: -32.77 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -65.66 5.11 -60.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.420 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds