Wall clock time and date at job start Thu Apr 9 2020 15:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00190 * 2 1 4 4 C 1.52994 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47512 * 185.71740 * 4 3 2 6 6 O 1.42902 * 109.46910 * 65.72330 * 4 3 2 7 7 C 1.42902 * 114.00225 * 136.75596 * 6 4 3 8 8 C 1.52996 * 109.47058 * 176.25870 * 7 6 4 9 9 C 1.50702 * 115.54823 * 158.50513 * 8 7 6 10 10 H 1.08003 * 120.00224 * 144.54260 * 9 8 7 11 11 C 1.37879 * 120.00027 * 324.53803 * 9 8 7 12 12 N 1.31513 * 120.00123 * 169.73138 * 11 9 8 13 13 Si 1.86803 * 119.99948 * 349.72533 * 11 9 8 14 14 H 1.48505 * 109.46591 * 96.11957 * 13 11 9 15 15 H 1.48499 * 109.47257 * 216.11623 * 13 11 9 16 16 H 1.48500 * 109.47165 * 336.12096 * 13 11 9 17 17 C 1.53004 * 117.50059 * 12.80103 * 8 7 6 18 18 C 1.53001 * 117.50348 * 304.17705 * 8 7 6 19 19 C 1.53000 * 109.47389 * 305.72280 * 4 3 2 20 20 C 1.52994 * 109.47274 * 182.88657 * 19 4 3 21 21 C 1.53004 * 109.46604 * 302.88450 * 19 4 3 22 22 H 1.08998 * 109.47173 * 59.99577 * 1 2 3 23 23 H 1.09000 * 109.47035 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47022 * 299.99863 * 1 2 3 25 25 H 1.09001 * 109.47081 * 59.99495 * 3 2 1 26 26 H 1.09000 * 109.47007 * 300.00332 * 3 2 1 27 27 H 1.09001 * 109.46966 * 296.26083 * 7 6 4 28 28 H 1.08999 * 109.47134 * 56.25924 * 7 6 4 29 29 H 0.96995 * 120.00149 * 179.97438 * 12 11 9 30 30 H 1.08994 * 117.49780 * 359.97438 * 17 8 7 31 31 H 1.09002 * 117.49820 * 145.02360 * 17 8 7 32 32 H 1.09000 * 117.49798 * 214.98752 * 18 8 7 33 33 H 1.09002 * 117.49301 * 359.97438 * 18 8 7 34 34 H 1.09002 * 109.46914 * 62.88470 * 19 4 3 35 35 H 1.08995 * 109.47436 * 56.89399 * 20 19 4 36 36 H 1.09002 * 109.47041 * 176.89518 * 20 19 4 37 37 H 1.09000 * 109.47198 * 296.89208 * 20 19 4 38 38 H 1.08993 * 109.47516 * 305.44086 * 21 19 4 39 39 H 1.09002 * 109.47141 * 65.44516 * 21 19 4 40 40 H 1.09002 * 109.46548 * 185.43576 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9783 2.1753 0.1030 6 8 3.9670 0.5946 -1.2272 7 6 5.1110 1.2265 -1.8053 8 6 5.5384 0.4597 -3.0583 9 6 6.3707 1.2382 -4.0444 10 1 7.1554 0.7437 -4.5978 11 6 6.1305 2.5817 -4.2401 12 7 6.9756 3.3056 -4.9410 13 14 4.6044 3.3737 -3.5097 14 1 4.9497 4.0109 -2.2135 15 1 4.0856 4.4039 -4.4450 16 1 3.5651 2.3361 -3.2900 17 6 4.5625 -0.5764 -3.6198 18 6 5.8363 -1.0333 -2.9059 19 6 3.9769 0.3050 1.1721 20 6 5.5050 0.2428 1.2156 21 6 3.4532 0.8988 2.4813 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 4.8618 2.2528 -2.0746 28 1 5.9283 1.2283 -1.0840 29 1 6.8065 4.2506 -5.0790 30 1 3.6163 -0.7121 -3.0962 31 1 4.5224 -0.6951 -4.7026 32 1 6.6342 -1.4524 -3.5189 33 1 5.7283 -1.4691 -1.9126 34 1 3.5759 -0.7003 1.0428 35 1 5.9078 1.2529 1.2893 36 1 5.8204 -0.3383 2.0821 37 1 5.8754 -0.2306 0.3063 38 1 3.7749 1.9368 2.5639 39 1 2.3641 0.8541 2.4905 40 1 3.8472 0.3281 3.3223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404072891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:13:48 Heat of formation + Delta-G solvation = -63.187042 kcal Electronic energy + Delta-G solvation = -18949.630166 eV Core-core repulsion = 16152.064682 eV Total energy + Delta-G solvation = -2797.565484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.08993 -37.44159 -36.02319 -34.07457 -32.19810 -29.52634 -27.24139 -26.90172 -26.09285 -24.67669 -22.83355 -21.20124 -19.91752 -19.00901 -16.95422 -16.46684 -16.26783 -15.60183 -15.41252 -15.24122 -14.36043 -13.99207 -13.61284 -13.25694 -12.95284 -12.71145 -12.39693 -12.25289 -12.03329 -11.77851 -11.61400 -11.29491 -11.24801 -10.85825 -10.77137 -10.40142 -10.38294 -10.16706 -9.79783 -9.59144 -9.34489 -9.28411 -9.03166 -8.42546 -8.20966 -6.17821 -4.10968 3.15971 3.35565 3.44015 3.85661 4.13426 4.34832 4.85526 4.88518 4.97210 5.16238 5.24050 5.33362 5.42702 5.43711 5.49867 5.54891 5.61464 5.65712 5.75315 5.90023 5.94358 5.96447 5.98354 6.10284 6.11611 6.25613 6.39749 6.48430 6.56301 6.72445 6.76004 6.96767 7.18258 7.21128 7.39525 7.67854 7.89079 8.50469 8.87136 9.45359 10.94100 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.008182 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.037729 B = 3421.518272 C = 3566.136066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.060 3.940 4 C 0.091 3.909 5 H 0.068 0.932 6 O -0.361 6.361 7 C 0.087 3.913 8 C 0.007 3.993 9 C -0.480 4.480 10 H 0.081 0.919 11 C 0.072 3.928 12 N -0.891 5.891 13 Si 0.888 3.112 14 H -0.287 1.287 15 H -0.300 1.300 16 H -0.253 1.253 17 C -0.193 4.193 18 C -0.185 4.185 19 C -0.106 4.106 20 C -0.152 4.152 21 C -0.144 4.144 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.266 0.734 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 -3.346 13.522 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C -0.017 4.017 4 C 0.032 3.968 5 H 0.086 0.914 6 O -0.280 6.280 7 C 0.012 3.988 8 C 0.006 3.994 9 C -0.517 4.517 10 H 0.099 0.901 11 C -0.131 4.131 12 N -0.527 5.527 13 Si 0.720 3.280 14 H -0.215 1.215 15 H -0.228 1.228 16 H -0.177 1.177 17 C -0.231 4.231 18 C -0.222 4.222 19 C -0.125 4.125 20 C -0.209 4.209 21 C -0.202 4.202 22 H 0.058 0.942 23 H 0.102 0.898 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.097 -3.489 13.343 17.092 hybrid contribution -0.838 1.087 0.435 1.440 sum -10.935 -2.402 13.778 17.753 Atomic orbital electron populations 1.22715 0.81930 1.02471 0.99533 1.87977 1.18738 1.27184 1.95232 1.22800 0.93499 0.85316 1.00094 1.22166 0.91951 0.96346 0.86347 0.91396 1.88037 1.47501 1.56799 1.35684 1.22626 0.86386 0.94875 0.94961 1.19294 0.98664 0.88093 0.93359 1.20390 1.16836 0.93459 1.20994 0.90060 1.25044 0.96033 0.97014 0.95022 1.69904 1.35033 1.07297 1.40487 0.86826 0.85316 0.78784 0.77066 1.21527 1.22814 1.17750 1.22995 0.93386 1.08191 0.98495 1.22733 0.99668 0.99606 1.00185 1.21421 0.96158 1.01193 0.93694 1.21922 0.95125 1.01574 1.02282 1.21846 1.00851 1.00540 0.96927 0.94250 0.89822 0.94626 0.92488 0.92949 0.94980 0.93032 0.92419 0.90044 0.90450 0.90403 0.90831 0.89541 0.93119 0.92878 0.91424 0.93067 0.92664 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.37 -5.67 9.82 -39.34 -0.39 -6.06 16 3 C 0.06 0.88 5.21 37.15 0.19 1.07 16 4 C 0.09 1.50 2.26 -26.73 -0.06 1.44 16 5 H 0.07 1.10 7.68 -51.93 -0.40 0.71 16 6 O -0.36 -7.42 7.99 -39.34 -0.31 -7.74 16 7 C 0.09 1.95 4.18 37.16 0.16 2.11 16 8 C 0.01 0.17 1.87 -155.66 -0.29 -0.12 16 9 C -0.48 -13.72 9.59 -34.44 -0.33 -14.05 16 10 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 11 C 0.07 2.07 5.44 -17.82 -0.10 1.97 16 12 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 13 Si 0.89 22.26 24.32 -169.99 -4.13 18.13 16 14 H -0.29 -6.87 6.98 56.52 0.39 -6.47 16 15 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 16 H -0.25 -6.26 6.45 56.52 0.36 -5.90 16 17 C -0.19 -4.44 9.59 -26.73 -0.26 -4.70 16 18 C -0.18 -4.06 9.84 -26.73 -0.26 -4.33 16 19 C -0.11 -1.51 2.48 -90.62 -0.22 -1.74 16 20 C -0.15 -2.16 8.06 37.15 0.30 -1.86 16 21 C -0.14 -1.64 8.59 37.16 0.32 -1.32 16 22 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.68 6.84 -51.93 -0.36 0.32 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.78 1.72 -51.93 -0.09 0.69 16 28 H 0.05 1.10 6.28 -51.93 -0.33 0.77 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.08 1.84 7.12 -51.93 -0.37 1.47 16 31 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.09 1.34 7.64 -51.93 -0.40 0.94 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.09 6.74 -51.93 -0.35 0.74 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.60 6.83 -51.93 -0.35 0.24 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -30.75 311.51 -5.70 -36.45 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.89 Total: 0.84 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 0.56 Total: -20.06 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.77 Total: -26.26 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.70 Total: -13.79 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.13 Total: 18.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.75 -5.70 -36.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.734 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds