Wall clock time and date at job start Thu Apr 9 2020 15:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00190 * 2 1 4 4 C 1.52994 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47512 * 185.71740 * 4 3 2 6 6 O 1.42902 * 109.46910 * 65.72330 * 4 3 2 7 7 C 1.42902 * 114.00225 * 136.75596 * 6 4 3 8 8 C 1.52996 * 109.47058 * 176.25870 * 7 6 4 9 9 C 1.50702 * 115.54823 * 158.50513 * 8 7 6 10 10 H 1.08003 * 120.00224 * 144.54260 * 9 8 7 11 11 C 1.37879 * 120.00027 * 324.53803 * 9 8 7 12 12 N 1.31513 * 120.00123 * 169.73138 * 11 9 8 13 13 Si 1.86803 * 119.99948 * 349.72533 * 11 9 8 14 14 H 1.48505 * 109.46591 * 96.11957 * 13 11 9 15 15 H 1.48499 * 109.47257 * 216.11623 * 13 11 9 16 16 H 1.48500 * 109.47165 * 336.12096 * 13 11 9 17 17 C 1.53004 * 117.50059 * 12.80103 * 8 7 6 18 18 C 1.53001 * 117.50348 * 304.17705 * 8 7 6 19 19 C 1.53000 * 109.47389 * 305.72280 * 4 3 2 20 20 C 1.52994 * 109.47274 * 182.88657 * 19 4 3 21 21 C 1.53004 * 109.46604 * 302.88450 * 19 4 3 22 22 H 1.08998 * 109.47173 * 59.99577 * 1 2 3 23 23 H 1.09000 * 109.47035 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47022 * 299.99863 * 1 2 3 25 25 H 1.09001 * 109.47081 * 59.99495 * 3 2 1 26 26 H 1.09000 * 109.47007 * 300.00332 * 3 2 1 27 27 H 1.09001 * 109.46966 * 296.26083 * 7 6 4 28 28 H 1.08999 * 109.47134 * 56.25924 * 7 6 4 29 29 H 0.96995 * 120.00149 * 179.97438 * 12 11 9 30 30 H 1.08994 * 117.49780 * 359.97438 * 17 8 7 31 31 H 1.09002 * 117.49820 * 145.02360 * 17 8 7 32 32 H 1.09000 * 117.49798 * 214.98752 * 18 8 7 33 33 H 1.09002 * 117.49301 * 359.97438 * 18 8 7 34 34 H 1.09002 * 109.46914 * 62.88470 * 19 4 3 35 35 H 1.08995 * 109.47436 * 56.89399 * 20 19 4 36 36 H 1.09002 * 109.47041 * 176.89518 * 20 19 4 37 37 H 1.09000 * 109.47198 * 296.89208 * 20 19 4 38 38 H 1.08993 * 109.47516 * 305.44086 * 21 19 4 39 39 H 1.09002 * 109.47141 * 65.44516 * 21 19 4 40 40 H 1.09002 * 109.46548 * 185.43576 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9783 2.1753 0.1030 6 8 3.9670 0.5946 -1.2272 7 6 5.1110 1.2265 -1.8053 8 6 5.5384 0.4597 -3.0583 9 6 6.3707 1.2382 -4.0444 10 1 7.1554 0.7437 -4.5978 11 6 6.1305 2.5817 -4.2401 12 7 6.9756 3.3056 -4.9410 13 14 4.6044 3.3737 -3.5097 14 1 4.9497 4.0109 -2.2135 15 1 4.0856 4.4039 -4.4450 16 1 3.5651 2.3361 -3.2900 17 6 4.5625 -0.5764 -3.6198 18 6 5.8363 -1.0333 -2.9059 19 6 3.9769 0.3050 1.1721 20 6 5.5050 0.2428 1.2156 21 6 3.4532 0.8988 2.4813 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 4.8618 2.2528 -2.0746 28 1 5.9283 1.2283 -1.0840 29 1 6.8065 4.2506 -5.0790 30 1 3.6163 -0.7121 -3.0962 31 1 4.5224 -0.6951 -4.7026 32 1 6.6342 -1.4524 -3.5189 33 1 5.7283 -1.4691 -1.9126 34 1 3.5759 -0.7003 1.0428 35 1 5.9078 1.2529 1.2893 36 1 5.8204 -0.3383 2.0821 37 1 5.8754 -0.2306 0.3063 38 1 3.7749 1.9368 2.5639 39 1 2.3641 0.8541 2.4905 40 1 3.8472 0.3281 3.3223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404072891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:13:48 Heat of formation + Delta-G solvation = -82.725159 kcal Electronic energy + Delta-G solvation = -18950.477402 eV Core-core repulsion = 16152.064682 eV Total energy + Delta-G solvation = -2798.412720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.167 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.45729 -38.84704 -37.46853 -35.39911 -34.38141 -30.69691 -29.07387 -27.87644 -27.16423 -26.51973 -24.00334 -23.03463 -21.26124 -20.83077 -18.60160 -18.24140 -17.57860 -16.90366 -16.68288 -16.50703 -15.93577 -15.48639 -14.97506 -14.94780 -14.60789 -14.09128 -13.83736 -13.28246 -13.21628 -13.08636 -12.96281 -12.78717 -12.57081 -12.25569 -12.23581 -12.15230 -11.88297 -11.51624 -11.46175 -11.35409 -11.24554 -10.72696 -10.57026 -10.43827 -9.98698 -8.40002 -6.37539 1.16969 1.33248 1.46356 2.23716 2.62976 2.85709 2.91500 3.43763 3.73665 3.85914 4.05590 4.11115 4.17236 4.30585 4.35910 4.38763 4.41788 4.52976 4.54921 4.59868 4.61261 4.78816 4.83606 4.86710 4.89800 4.93750 5.01973 5.04339 5.10061 5.25423 5.32529 5.45645 5.46418 5.56810 5.64528 6.13911 6.24980 6.43639 6.62775 7.21740 8.75867 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.008182 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.037729 B = 3421.518272 C = 3566.136066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.061 3.939 4 C 0.076 3.924 5 H 0.071 0.929 6 O -0.374 6.374 7 C 0.098 3.902 8 C -0.021 4.021 9 C -0.490 4.490 10 H 0.041 0.959 11 C 0.021 3.979 12 N -0.936 5.936 13 Si 0.953 3.047 14 H -0.267 1.267 15 H -0.301 1.301 16 H -0.249 1.249 17 C -0.183 4.183 18 C -0.165 4.165 19 C -0.099 4.099 20 C -0.152 4.152 21 C -0.138 4.138 22 H 0.038 0.962 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.270 0.730 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 -3.421 16.090 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.317 6.317 3 C -0.016 4.016 4 C 0.018 3.982 5 H 0.089 0.911 6 O -0.293 6.293 7 C 0.023 3.977 8 C -0.022 4.022 9 C -0.528 4.528 10 H 0.060 0.940 11 C -0.178 4.178 12 N -0.574 5.574 13 Si 0.782 3.218 14 H -0.194 1.194 15 H -0.229 1.229 16 H -0.174 1.174 17 C -0.221 4.221 18 C -0.202 4.202 19 C -0.118 4.118 20 C -0.209 4.209 21 C -0.196 4.196 22 H 0.057 0.943 23 H 0.114 0.886 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.051 -3.582 15.928 20.292 hybrid contribution -0.208 1.009 -0.375 1.097 sum -12.258 -2.573 15.553 19.969 Atomic orbital electron populations 1.22917 0.79981 1.03688 1.00586 1.87934 1.20922 1.27441 1.95447 1.22799 0.92153 0.85525 1.01085 1.22563 0.93432 0.96838 0.85389 0.91057 1.87990 1.46545 1.57108 1.37646 1.22269 0.87569 0.93612 0.94251 1.19262 0.99705 0.89165 0.94064 1.20542 1.16446 0.94043 1.21740 0.94040 1.25816 0.98878 0.97552 0.95556 1.70026 1.37079 1.07874 1.42459 0.85777 0.81357 0.77738 0.76953 1.19418 1.22942 1.17378 1.22907 0.93913 1.06985 0.98309 1.22744 0.98917 0.97480 1.01032 1.21351 0.95964 1.00197 0.94307 1.21918 0.95280 1.01755 1.01936 1.21803 1.01302 1.01012 0.95439 0.94338 0.88642 0.92373 0.89225 0.94161 0.96271 0.92277 0.92104 0.89209 0.91075 0.90522 0.88730 0.90898 0.92955 0.90897 0.93865 0.92214 0.91894 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 113.37 1.25 1.72 16 2 O -0.40 -11.06 9.82 -145.05 -1.43 -12.49 16 3 C 0.06 1.62 5.21 71.98 0.37 2.00 16 4 C 0.08 2.31 2.26 30.59 0.07 2.38 16 5 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 6 O -0.37 -14.66 7.99 -145.05 -1.16 -15.81 16 7 C 0.10 4.32 4.18 71.98 0.30 4.62 16 8 C -0.02 -1.03 1.87 -52.93 -0.10 -1.13 16 9 C -0.49 -28.77 9.59 25.60 0.25 -28.52 16 10 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 11 C 0.02 1.21 5.44 84.66 0.46 1.67 16 12 N -0.94 -58.29 13.96 21.45 0.30 -57.99 16 13 Si 0.95 46.20 24.32 68.60 1.67 47.86 16 14 H -0.27 -11.98 6.98 99.48 0.69 -11.28 16 15 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 16 H -0.25 -11.82 6.45 99.48 0.64 -11.18 16 17 C -0.18 -8.29 9.59 30.60 0.29 -8.00 16 18 C -0.16 -7.10 9.84 30.60 0.30 -6.80 16 19 C -0.10 -2.57 2.48 -10.79 -0.03 -2.59 16 20 C -0.15 -3.97 8.06 71.98 0.58 -3.39 16 21 C -0.14 -2.61 8.59 71.98 0.62 -1.99 16 22 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.09 1.77 6.84 -2.39 -0.02 1.75 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.02 0.92 1.72 -2.39 0.00 0.92 16 28 H 0.06 2.46 6.28 -2.39 -0.01 2.44 16 29 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.09 3.92 7.12 -2.39 -0.02 3.90 16 31 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.07 2.09 7.64 -2.39 -0.02 2.08 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.33 6.74 -2.39 -0.02 1.31 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.10 6.83 -2.39 -0.02 1.08 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -66.80 311.51 4.66 -62.14 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.91 Total: 16.33 kcal Atomic # 6 Polarization: -44.41 SS G_CDS: 4.37 Total: -40.04 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.30 Total: -57.99 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -2.58 Total: -28.30 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.67 Total: 47.86 kcal Total: -66.80 4.66 -62.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404072891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.589 kcal (2) G-P(sol) polarization free energy of solvation -66.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds