Wall clock time and date at job start Thu Apr 9 2020 15:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36831 * 119.99996 * 2 1 4 4 H 1.08004 * 120.00177 * 159.38963 * 3 2 1 5 5 C 1.38782 * 119.99980 * 339.38868 * 3 2 1 6 6 N 1.31601 * 120.00043 * 347.65258 * 5 3 2 7 7 Si 1.86802 * 119.99739 * 167.93072 * 5 3 2 8 8 H 1.48501 * 109.47310 * 89.99940 * 7 5 3 9 9 H 1.48502 * 109.46894 * 209.99822 * 7 5 3 10 10 H 1.48502 * 109.47434 * 329.99491 * 7 5 3 11 11 C 1.39362 * 119.99835 * 180.02562 * 2 1 3 12 12 C 1.39069 * 120.08101 * 269.72348 * 11 2 1 13 13 C 1.38038 * 119.93523 * 179.73007 * 12 11 2 14 14 C 1.38463 * 120.09660 * 0.56738 * 13 12 11 15 15 Cl 1.73603 * 119.91494 * 179.72828 * 14 13 12 16 16 C 1.38404 * 120.16531 * 359.70536 * 14 13 12 17 17 C 1.38167 * 120.06442 * 0.02562 * 16 14 13 18 18 Cl 1.73593 * 120.04820 * 180.02562 * 17 16 14 19 19 H 1.08996 * 109.47242 * 84.89938 * 1 2 3 20 20 H 1.09003 * 109.46942 * 204.89918 * 1 2 3 21 21 H 1.08997 * 109.46785 * 324.89750 * 1 2 3 22 22 H 0.97000 * 119.99961 * 180.02562 * 6 5 3 23 23 H 1.07996 * 120.02937 * 359.97438 * 12 11 2 24 24 H 1.07990 * 119.95093 * 180.29764 * 13 12 11 25 25 H 1.08004 * 119.97044 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1774 1.2150 0.3292 5 6 1.5219 2.3484 -0.4231 6 7 0.3655 2.2826 -1.0478 7 14 2.3229 4.0072 -0.1127 8 1 3.1979 4.3569 -1.2604 9 1 1.2707 5.0438 0.0413 10 1 3.1366 3.9398 1.1277 11 6 2.1618 -1.2069 -0.0005 12 6 2.5153 -1.8082 1.2026 13 6 3.2006 -3.0065 1.1986 14 6 3.5466 -3.6045 -0.0014 15 17 4.4146 -5.1079 -0.0009 16 6 3.2018 -3.0068 -1.2012 17 6 2.5110 -1.8102 -1.2050 18 17 2.0782 -1.0613 -2.7101 19 1 -0.3633 0.0914 -1.0235 20 1 -0.3633 -0.9322 0.4327 21 1 -0.3633 0.8408 0.5909 22 1 -0.0728 3.0958 -1.3438 23 1 2.2505 -1.3401 2.1391 24 1 3.4710 -3.4761 2.1327 25 1 3.4729 -3.4762 -2.1353 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049815744.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:15:15 Heat of formation + Delta-G solvation = 35.952541 kcal Electronic energy + Delta-G solvation = -13362.330228 eV Core-core repulsion = 10814.412321 eV Total energy + Delta-G solvation = -2547.917907 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.007 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.96822 -36.48100 -35.57203 -35.13019 -31.52933 -30.40496 -28.54225 -25.98101 -23.49275 -22.31829 -20.69093 -17.33056 -16.61666 -15.57702 -15.35735 -14.41730 -13.80195 -13.61704 -13.35229 -12.90729 -12.25738 -12.11260 -11.68506 -11.38365 -11.00574 -10.91943 -10.66034 -10.63588 -10.45193 -10.17526 -10.11463 -9.91637 -8.68981 -8.45478 -7.89785 -7.07247 -5.84172 -3.34197 1.55560 1.60499 2.28108 3.02027 3.33714 3.40364 3.41827 3.99527 4.39895 5.09296 5.21702 5.30827 5.42420 5.75776 5.93566 6.15961 6.32346 6.49164 6.64897 6.95590 7.01863 7.33110 7.66926 7.73296 8.29893 9.08563 9.75412 10.14060 11.20305 Molecular weight = 245.01amu Principal moments of inertia in cm(-1) A = 0.034816 B = 0.007259 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.036131 B = 3856.540298 C = 4118.492468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.562 5.562 3 C -0.260 4.260 4 H 0.071 0.929 5 C 0.015 3.985 6 N -0.896 5.896 7 Si 0.907 3.093 8 H -0.286 1.286 9 H -0.288 1.288 10 H -0.278 1.278 11 C 0.229 3.771 12 C -0.118 4.118 13 C -0.106 4.106 14 C -0.051 4.051 15 Cl -0.086 7.086 16 C -0.107 4.107 17 C -0.044 4.044 18 Cl -0.047 7.047 19 H 0.040 0.960 20 H -0.001 1.001 21 H 0.053 0.947 22 H 0.255 0.745 23 H 0.136 0.864 24 H 0.128 0.872 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 -10.064 1.832 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.281 5.281 3 C -0.388 4.388 4 H 0.089 0.911 5 C -0.184 4.184 6 N -0.539 5.539 7 Si 0.736 3.264 8 H -0.212 1.212 9 H -0.214 1.214 10 H -0.204 1.204 11 C 0.132 3.868 12 C -0.139 4.139 13 C -0.126 4.126 14 C -0.078 4.078 15 Cl -0.057 7.057 16 C -0.128 4.128 17 C -0.074 4.074 18 Cl -0.017 7.017 19 H 0.059 0.941 20 H 0.018 0.982 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.153 0.847 24 H 0.146 0.854 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.647 -9.913 1.626 10.687 hybrid contribution 0.504 0.844 -0.152 0.995 sum 4.151 -9.068 1.474 10.082 Atomic orbital electron populations 1.20916 0.80386 0.95949 1.00420 1.41478 1.02345 0.98752 1.85536 1.19049 0.97293 0.83611 1.38797 0.91091 1.24969 0.97359 0.98425 0.97680 1.70085 1.16924 1.27103 1.39824 0.86229 0.78417 0.83522 0.78185 1.21237 1.21444 1.20367 1.17793 0.91317 0.88042 0.89662 1.21745 0.98483 0.94634 0.99039 1.20913 0.99482 0.95827 0.96343 1.20533 1.02733 0.89859 0.94635 1.98326 1.75760 1.32649 1.98972 1.20761 0.99780 0.94943 0.97269 1.22180 1.01554 0.94229 0.89475 1.98366 1.91547 1.81887 1.29944 0.94130 0.98242 0.92872 0.93502 0.84662 0.85399 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.95 8.95 59.85 0.54 4.48 15 2 N -0.56 -13.57 2.34 -120.46 -0.28 -13.85 15 3 C -0.26 -6.84 9.66 -15.12 -0.15 -6.99 15 4 H 0.07 1.87 7.86 -52.48 -0.41 1.46 15 5 C 0.02 0.41 5.12 -17.45 -0.09 0.32 15 6 N -0.90 -24.77 10.53 55.49 0.58 -24.18 15 7 Si 0.91 21.19 29.57 -169.99 -5.03 16.17 15 8 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 11 C 0.23 4.81 5.02 -83.78 -0.42 4.39 15 12 C -0.12 -2.10 9.97 -39.35 -0.39 -2.49 15 13 C -0.11 -1.62 9.82 -39.57 -0.39 -2.01 15 14 C -0.05 -0.79 6.32 -39.44 -0.25 -1.04 15 15 Cl -0.09 -1.14 28.95 -51.86 -1.50 -2.64 15 16 C -0.11 -1.80 9.60 -39.55 -0.38 -2.18 15 17 C -0.04 -0.87 6.34 -39.26 -0.25 -1.12 15 18 Cl -0.05 -0.97 28.44 -51.86 -1.47 -2.44 15 19 H 0.04 1.04 7.40 -51.93 -0.38 0.66 15 20 H 0.00 -0.02 8.01 -51.93 -0.42 -0.44 15 21 H 0.05 1.33 7.15 -51.93 -0.37 0.96 15 22 H 0.25 6.87 8.31 -40.82 -0.34 6.53 15 23 H 0.14 2.28 8.06 -52.49 -0.42 1.86 15 24 H 0.13 1.61 8.06 -52.49 -0.42 1.18 15 25 H 0.13 1.95 8.06 -52.48 -0.42 1.53 15 LS Contribution 254.86 15.07 3.84 3.84 Total: -1.00 -27.07 254.86 -7.63 -34.70 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: -1.99 Total: -4.95 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.78 Total: -6.63 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.30 Total: -38.04 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -2.98 Total: -5.08 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.07 -7.63 -34.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049815744.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.649 kcal (2) G-P(sol) polarization free energy of solvation -27.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds