Wall clock time and date at job start Thu Apr 9 2020 15:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37975 * 120.07526 * 2 1 4 4 C 1.38340 * 120.14411 * 180.02562 * 3 2 1 5 5 C 1.38383 * 120.29166 * 359.97438 * 4 3 2 6 6 C 1.37932 * 120.14598 * 359.97438 * 5 4 3 7 7 C 1.39555 * 120.06980 * 180.02562 * 2 1 3 8 8 C 1.47844 * 120.14697 * 359.97438 * 7 2 1 9 9 O 1.21551 * 120.00314 * 35.71303 * 8 7 2 10 10 N 1.34778 * 119.99876 * 215.71573 * 8 7 2 11 11 C 1.47068 * 136.05844 * 5.60064 * 10 8 7 12 12 C 1.53498 * 87.98484 * 207.08643 * 11 10 8 13 13 C 1.47074 * 136.05682 * 185.23287 * 10 8 7 14 14 H 1.08999 * 113.46446 * 267.69448 * 13 10 8 15 15 C 1.50701 * 113.46438 * 38.13101 * 13 10 8 16 16 H 1.07993 * 120.00319 * 0.02562 * 15 13 10 17 17 C 1.37880 * 119.99704 * 179.97438 * 15 13 10 18 18 N 1.31518 * 119.99798 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00088 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47197 * 60.00030 * 19 17 15 21 21 H 1.48493 * 109.47353 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47116 * 300.00459 * 19 17 15 23 23 H 1.09001 * 109.46886 * 85.42673 * 1 2 3 24 24 H 1.08996 * 109.47101 * 205.42278 * 1 2 3 25 25 H 1.08994 * 109.46447 * 325.42764 * 1 2 3 26 26 H 1.07993 * 119.92924 * 0.02562 * 3 2 1 27 27 H 1.07994 * 119.85269 * 179.97438 * 4 3 2 28 28 H 1.07999 * 119.92459 * 179.70213 * 5 4 3 29 29 H 1.07999 * 120.07512 * 179.97438 * 6 5 4 30 30 H 1.08994 * 113.46879 * 321.86448 * 11 10 8 31 31 H 1.09007 * 113.46543 * 92.30903 * 11 10 8 32 32 H 1.08999 * 114.20514 * 87.52348 * 12 11 10 33 33 H 1.09008 * 114.20538 * 220.15234 * 12 11 10 34 34 H 0.97002 * 119.99611 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1957 -0.0005 5 6 4.2813 0.0016 -0.0005 6 6 3.6023 -1.1990 0.0005 7 6 2.2063 -1.2077 -0.0005 8 6 1.4719 -2.4909 -0.0005 9 8 0.4280 -2.5937 -0.6146 10 7 1.9600 -3.5466 0.6804 11 6 3.0879 -3.7887 1.5926 12 6 3.0777 -5.2522 1.1298 13 6 1.5952 -4.9621 0.8434 14 1 0.9438 -5.1468 1.6976 15 6 1.0904 -5.6014 -0.4245 16 1 1.0268 -5.0217 -1.3334 17 6 0.7107 -6.9269 -0.4242 18 7 0.7886 -7.6330 0.6826 19 14 0.0856 -7.7198 -1.9958 20 1 1.1399 -7.6488 -3.0393 21 1 -0.2553 -9.1407 -1.7318 22 1 -1.1252 -6.9998 -2.4658 23 1 -0.3633 0.0819 -1.0244 24 1 -0.3633 -0.9281 0.4412 25 1 -0.3632 0.8462 0.5831 26 1 1.6586 2.1293 0.0004 27 1 4.1183 2.1329 -0.0010 28 1 5.3613 0.0098 -0.0058 29 1 4.1493 -2.1302 0.0001 30 1 3.9945 -3.2517 1.3139 31 1 2.8300 -3.6642 2.6444 32 1 3.6788 -5.4441 0.2410 33 1 3.2465 -5.9747 1.9284 34 1 0.5219 -8.5657 0.6827 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259956708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 15:14:55 Heat of formation + Delta-G solvation = 26.565380 kcal Electronic energy + Delta-G solvation = -17429.360419 eV Core-core repulsion = 14714.425328 eV Total energy + Delta-G solvation = -2714.935091 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.93957 -38.44446 -36.62031 -32.61430 -32.44236 -31.21214 -28.62427 -26.80356 -26.65773 -23.42167 -22.96847 -21.56261 -20.60108 -18.36994 -17.01454 -16.49560 -15.67467 -15.37272 -15.11262 -14.64421 -13.99851 -13.76305 -13.67323 -13.01967 -12.80587 -12.43417 -11.97126 -11.88195 -11.74129 -11.55384 -11.34999 -11.30145 -10.97073 -10.81123 -10.60288 -10.24429 -10.05916 -9.11442 -8.80232 -8.74008 -8.55548 -8.44886 -7.60716 -6.08192 -4.10083 1.19597 1.46782 3.34669 3.37730 3.40730 3.45018 3.76641 4.11318 4.45458 4.90562 4.96800 5.02779 5.08584 5.25713 5.40997 5.53685 5.56613 5.76098 5.88520 5.92845 5.95681 5.99098 6.07363 6.37714 6.46781 6.51702 6.56602 6.72301 6.75014 6.85667 6.99661 7.06997 7.51436 7.91732 8.18056 8.73663 8.95736 9.09867 9.56234 11.00511 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.032311 B = 0.006450 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.360715 B = 4340.345058 C = 4771.250420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.037 4.037 3 C -0.132 4.132 4 C -0.106 4.106 5 C -0.136 4.136 6 C -0.087 4.087 7 C -0.116 4.116 8 C 0.573 3.427 9 O -0.531 6.531 10 N -0.632 5.632 11 C 0.087 3.913 12 C -0.143 4.143 13 C 0.272 3.728 14 H 0.057 0.943 15 C -0.512 4.512 16 H 0.066 0.934 17 C 0.066 3.934 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.023 13.596 2.192 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.038 4.038 3 C -0.150 4.150 4 C -0.124 4.124 5 C -0.155 4.155 6 C -0.106 4.106 7 C -0.119 4.119 8 C 0.362 3.638 9 O -0.410 6.410 10 N -0.367 5.367 11 C -0.037 4.037 12 C -0.181 4.181 13 C 0.172 3.828 14 H 0.075 0.925 15 C -0.550 4.550 16 H 0.085 0.915 17 C -0.136 4.136 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.094 0.906 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.325 13.508 1.825 15.027 hybrid contribution -0.169 -0.421 -0.722 0.853 sum 6.155 13.087 1.103 14.504 Atomic orbital electron populations 1.20909 0.90437 1.03175 1.02848 1.19998 0.96657 0.91610 0.95564 1.20949 0.94239 0.97236 1.02614 1.21210 0.94214 0.97975 0.99042 1.21046 0.99816 0.92307 1.02283 1.21493 0.93222 0.98665 0.97175 1.20181 0.93899 0.93897 1.03915 1.17609 0.84228 0.81683 0.80313 1.90739 1.22788 1.82871 1.44573 1.50140 1.30640 1.11916 1.43960 1.23127 0.89316 0.97378 0.93845 1.23451 1.01331 0.92676 1.00689 1.20303 0.92292 0.72633 0.97580 0.92513 1.21135 1.43154 0.95282 0.95469 0.91538 1.24913 0.94962 0.97155 0.96600 1.69927 1.47921 1.08836 1.26510 0.86536 0.79624 0.77852 0.83319 1.20196 1.21240 1.20066 0.90588 0.89965 0.92310 0.85852 0.86112 0.85900 0.85166 0.91988 0.91032 0.90170 0.90826 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.02 36.01 0.32 -1.50 16 2 C -0.04 -0.60 5.91 -104.22 -0.62 -1.21 16 3 C -0.13 -1.70 9.71 -39.64 -0.38 -2.08 16 4 C -0.11 -1.23 10.04 -39.49 -0.40 -1.63 16 5 C -0.14 -1.69 10.03 -39.64 -0.40 -2.08 16 6 C -0.09 -1.33 8.77 -39.19 -0.34 -1.67 16 7 C -0.12 -2.10 5.73 -104.97 -0.60 -2.70 16 8 C 0.57 12.85 7.03 -12.33 -0.09 12.76 16 9 O -0.53 -13.78 14.60 5.32 0.08 -13.70 16 10 N -0.63 -14.02 3.50 -179.74 -0.63 -14.64 16 11 C 0.09 1.53 7.82 -8.50 -0.07 1.47 16 12 C -0.14 -2.95 8.03 -26.08 -0.21 -3.16 16 13 C 0.27 6.83 3.74 -73.40 -0.27 6.55 16 14 H 0.06 1.54 8.13 -51.93 -0.42 1.12 16 15 C -0.51 -14.60 8.56 -34.44 -0.29 -14.90 16 16 H 0.07 2.02 7.40 -52.49 -0.39 1.63 16 17 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 18 N -0.89 -25.40 13.28 55.43 0.74 -24.67 16 19 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.08 1.52 6.04 -51.93 -0.31 1.21 16 25 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 26 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.13 1.92 5.87 -52.49 -0.31 1.61 16 30 H 0.06 0.92 5.68 -51.93 -0.30 0.62 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.68 8.12 -51.93 -0.42 1.26 16 33 H 0.07 1.47 8.14 -51.92 -0.42 1.04 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 288.35 15.07 4.35 4.35 Total: -1.00 -31.76 288.35 -8.18 -39.94 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.24 Total: 0.05 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -3.44 Total: -8.39 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.11 Total: -39.31 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.76 -8.18 -39.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.508 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds