Wall clock time and date at job start Thu Apr 9 2020 12:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37792 * 119.54944 * 2 1 4 4 C 1.37891 * 120.76660 * 180.02562 * 3 2 1 5 5 C 1.40411 * 119.87937 * 0.02562 * 4 3 2 6 6 C 1.40927 * 120.11277 * 180.02562 * 5 4 3 7 7 H 1.07999 * 120.00166 * 150.00416 * 6 5 4 8 8 C 1.39924 * 120.00031 * 330.01032 * 6 5 4 9 9 N 1.30874 * 120.00288 * 161.75381 * 8 6 5 10 10 Si 1.86807 * 120.00013 * 341.75091 * 8 6 5 11 11 H 1.48506 * 109.46808 * 95.41062 * 10 8 6 12 12 H 1.48504 * 109.47178 * 215.41061 * 10 8 6 13 13 H 1.48496 * 109.47084 * 335.41354 * 10 8 6 14 14 C 1.42153 * 119.77037 * 359.97438 * 5 4 3 15 15 S 1.75896 * 130.54466 * 180.02562 * 14 5 4 16 16 C 1.75303 * 92.17529 * 179.97438 * 15 14 5 17 17 C 1.50702 * 124.33040 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.46903 * 270.02658 * 17 16 15 19 19 O 1.20826 * 119.99878 * 359.97438 * 18 17 16 20 20 O 1.34225 * 119.99762 * 180.02562 * 18 17 16 21 21 C 1.31861 * 111.33973 * 0.02562 * 16 15 14 22 22 C 1.39430 * 119.69050 * 359.72375 * 14 5 4 23 23 H 1.08998 * 109.47335 * 89.99578 * 1 2 3 24 24 H 1.09006 * 109.46989 * 329.99692 * 1 2 3 25 25 H 1.08999 * 109.47182 * 209.99975 * 1 2 3 26 26 H 1.08001 * 119.61808 * 0.02562 * 3 2 1 27 27 H 1.07997 * 120.05873 * 180.02562 * 4 3 2 28 28 H 0.96994 * 119.99869 * 179.97438 * 9 8 6 29 29 H 1.08994 * 109.47089 * 30.02315 * 17 16 15 30 30 H 1.08993 * 109.46875 * 150.03211 * 17 16 15 31 31 H 0.96698 * 117.00001 * 179.97438 * 20 18 17 32 32 H 1.08004 * 122.55917 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1866 1.1987 0.0000 4 6 3.5652 1.2280 -0.0005 5 6 4.2904 0.0256 -0.0016 6 6 5.6994 0.0498 -0.0016 7 1 6.2533 -0.7512 0.4652 8 6 6.3809 1.1118 -0.6064 9 7 7.6367 1.3352 -0.3131 10 14 5.4984 2.2106 -1.8325 11 1 4.9822 3.4158 -1.1349 12 1 6.4460 2.6236 -2.8987 13 1 4.3653 1.4661 -2.4383 14 6 3.5983 -1.2160 -0.0016 15 16 4.2092 -2.8655 -0.0022 16 6 2.5896 -3.5363 -0.0010 17 6 2.2805 -5.0113 -0.0014 18 6 2.1768 -5.5024 -1.4224 19 8 2.3369 -4.7334 -2.3405 20 8 1.9056 -6.7938 -1.6680 21 6 1.6763 -2.5852 -0.0007 22 6 2.2041 -1.2296 0.0053 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8900 0.5138 26 1 1.6330 2.1261 0.0004 27 1 4.0861 2.1740 -0.0001 28 1 8.1091 2.0711 -0.7326 29 1 3.0774 -5.5496 0.5118 30 1 1.3352 -5.1845 0.5128 31 1 1.8485 -7.0617 -2.5954 32 1 0.6171 -2.7964 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725314229.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:00 Heat of formation + Delta-G solvation = -68.767485 kcal Electronic energy + Delta-G solvation = -18334.741465 eV Core-core repulsion = 15350.653734 eV Total energy + Delta-G solvation = -2984.087731 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.061 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.16702 -38.43969 -36.22351 -35.17384 -33.76921 -31.71931 -31.09944 -27.95451 -26.82977 -23.76313 -22.74995 -21.67033 -20.42033 -19.36606 -18.05305 -17.51245 -16.48689 -15.97254 -15.91133 -15.15218 -14.75990 -14.39211 -13.66383 -13.32886 -13.23133 -12.97874 -12.86308 -12.41457 -12.03836 -11.82043 -11.69027 -11.56376 -11.46946 -11.07440 -10.93588 -10.66952 -10.50804 -10.24614 -9.89864 -9.78250 -9.49671 -9.22476 -8.31234 -7.46230 -7.07813 -6.82485 -4.55061 1.58103 2.26327 2.39849 2.44609 2.91584 3.03621 3.07596 3.16750 3.27686 3.42066 3.92480 4.38726 4.70381 5.15339 5.19727 5.37880 5.43901 5.81995 5.82583 5.90061 6.18148 6.23326 6.25075 6.43801 6.47878 6.52194 6.61331 6.81306 7.10924 7.17270 7.28669 7.57693 7.74780 7.92088 7.92994 8.20001 8.44318 8.63332 9.93235 Molecular weight = 276.06amu Principal moments of inertia in cm(-1) A = 0.019986 B = 0.006327 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.618067 B = 4424.702512 C = 5234.719288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.189 4.189 3 C -0.060 4.060 4 C -0.245 4.245 5 C 0.125 3.875 6 C -0.437 4.437 7 H 0.094 0.906 8 C 0.086 3.914 9 N -0.797 5.797 10 Si 0.912 3.088 11 H -0.268 1.268 12 H -0.289 1.289 13 H -0.242 1.242 14 C -0.187 4.187 15 S 0.081 5.919 16 C -0.188 4.188 17 C -0.033 4.033 18 C 0.472 3.528 19 O -0.493 6.493 20 O -0.523 6.523 21 C -0.099 4.099 22 C -0.035 4.035 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.288 0.712 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.408 0.592 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.532 -8.918 -0.216 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.193 4.193 3 C -0.079 4.079 4 C -0.268 4.268 5 C 0.119 3.881 6 C -0.465 4.465 7 H 0.112 0.888 8 C -0.134 4.134 9 N -0.419 5.419 10 Si 0.738 3.262 11 H -0.193 1.193 12 H -0.217 1.217 13 H -0.165 1.165 14 C -0.303 4.303 15 S 0.347 5.653 16 C -0.303 4.303 17 C -0.073 4.073 18 C 0.313 3.687 19 O -0.379 6.379 20 O -0.335 6.335 21 C -0.132 4.132 22 C -0.042 4.042 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.266 0.734 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.706 -9.181 -0.064 11.987 hybrid contribution -1.534 1.064 -1.161 2.199 sum -9.240 -8.117 -1.225 12.360 Atomic orbital electron populations 1.20411 0.93077 1.00602 1.00136 1.18927 0.93804 0.90938 1.15634 1.20272 0.94043 0.95630 0.97966 1.20763 0.93470 0.96519 1.16079 1.17043 0.93118 0.88450 0.89521 1.19436 0.89942 1.06467 1.30652 0.88849 1.26186 0.94843 0.96114 0.96282 1.69701 1.10865 1.26488 1.34895 0.86265 0.80025 0.80095 0.79793 1.19349 1.21665 1.16461 1.22570 0.95191 0.95780 1.16755 1.83623 1.03991 0.98425 1.79306 1.23067 0.98931 0.96027 1.12320 1.19656 1.05647 0.91435 0.90541 1.23522 0.72779 0.79397 0.93048 1.90794 1.44351 1.56072 1.46676 1.84519 1.83679 1.29154 1.36187 1.20736 0.98841 0.91218 1.02435 1.18693 0.91659 0.91955 1.01941 0.93494 0.93218 0.93304 0.88295 0.87551 0.90123 0.86849 0.86477 0.73396 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 9.83 36.01 0.35 -1.05 16 2 C -0.19 -3.98 5.96 -103.60 -0.62 -4.60 16 3 C -0.06 -1.30 9.59 -39.87 -0.38 -1.68 16 4 C -0.25 -5.93 7.15 -38.89 -0.28 -6.21 16 5 C 0.12 3.21 5.12 -106.56 -0.55 2.67 16 6 C -0.44 -11.80 9.31 -37.93 -0.35 -12.16 16 7 H 0.09 2.64 8.01 -52.49 -0.42 2.22 16 8 C 0.09 2.25 5.40 -17.33 -0.09 2.16 16 9 N -0.80 -20.91 13.93 55.55 0.77 -20.13 16 10 Si 0.91 20.84 24.52 -169.99 -4.17 16.67 16 11 H -0.27 -5.84 6.71 56.52 0.38 -5.46 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.24 -5.78 6.87 56.52 0.39 -5.39 16 14 C -0.19 -4.53 6.36 -37.64 -0.24 -4.77 16 15 S 0.08 1.69 22.88 -107.50 -2.46 -0.77 16 16 C -0.19 -3.30 4.88 -36.21 -0.18 -3.47 16 17 C -0.03 -0.42 6.25 -29.03 -0.18 -0.60 16 18 C 0.47 6.41 8.32 36.01 0.30 6.71 16 19 O -0.49 -8.90 16.79 -18.75 -0.31 -9.21 16 20 O -0.52 -5.17 13.42 -39.24 -0.53 -5.70 16 21 C -0.10 -1.85 9.62 -38.60 -0.37 -2.22 16 22 C -0.04 -0.78 5.97 -105.39 -0.63 -1.41 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.73 8.07 -51.93 -0.42 0.31 16 25 H 0.05 0.73 7.23 -51.93 -0.38 0.36 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.11 2.53 4.73 -52.49 -0.25 2.28 16 28 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 29 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.41 2.41 9.10 45.56 0.41 2.82 16 32 H 0.13 1.98 7.51 -52.48 -0.39 1.59 16 LS Contribution 291.41 15.07 4.39 4.39 Total: -1.00 -31.10 291.41 -7.82 -38.92 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -2.30 Total: 2.47 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -3.21 Total: -26.65 kcal Atomic # 7 Polarization: -20.91 SS G_CDS: 0.77 Total: -20.13 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.84 Total: -14.91 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.17 Total: 16.67 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.46 Total: -0.77 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.10 -7.82 -38.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725314229.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.844 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds