Wall clock time and date at job start Thu Apr 9 2020 12:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35718 * 119.58450 * 2 1 4 4 C 1.41122 * 120.10538 * 179.97438 * 3 2 1 5 5 C 1.41274 * 120.06101 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99750 * 24.87358 * 5 4 3 7 7 C 1.39855 * 120.00392 * 204.86886 * 5 4 3 8 8 N 1.30899 * 119.99633 * 18.03453 * 7 5 4 9 9 Si 1.86794 * 120.00059 * 198.03518 * 7 5 4 10 10 H 1.48493 * 109.47355 * 59.99968 * 9 7 5 11 11 H 1.48504 * 109.47137 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47208 * 299.99618 * 9 7 5 13 13 C 1.39953 * 119.88067 * 0.02562 * 4 3 2 14 14 C 1.40485 * 119.98116 * 359.97438 * 13 4 3 15 15 C 1.45577 * 129.19414 * 180.02562 * 14 13 4 16 16 C 1.31699 * 114.88550 * 179.97438 * 15 14 13 17 17 C 1.50700 * 124.23295 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47063 * 89.97723 * 17 16 15 19 19 O 1.20826 * 119.99966 * 359.97438 * 18 17 16 20 20 O 1.34228 * 119.99909 * 180.02562 * 18 17 16 21 21 S 1.75258 * 111.52946 * 359.97438 * 16 15 14 22 22 C 1.40184 * 119.03340 * 359.97438 * 14 13 4 23 23 H 1.09001 * 109.47130 * 89.99246 * 1 2 3 24 24 H 1.09001 * 109.46784 * 209.99445 * 1 2 3 25 25 H 1.08998 * 109.47014 * 329.99589 * 1 2 3 26 26 H 1.07998 * 119.94605 * 0.28164 * 3 2 1 27 27 H 0.96999 * 119.99537 * 179.97438 * 8 7 5 28 28 H 1.07996 * 120.00745 * 180.02562 * 13 4 3 29 29 H 1.07997 * 122.55552 * 359.97438 * 15 14 13 30 30 H 1.09001 * 109.47310 * 209.97589 * 17 16 15 31 31 H 1.08997 * 109.47220 * 329.97567 * 17 16 15 32 32 H 0.96702 * 117.00318 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1770 1.1802 0.0000 4 6 3.5882 1.1931 0.0005 5 6 4.2847 2.4222 0.0000 6 1 3.8125 3.3106 0.3926 7 6 5.5857 2.4885 -0.5089 8 7 6.0315 1.5387 -1.2915 9 14 6.6871 3.9325 -0.0717 10 1 6.8747 3.9841 1.4005 11 1 8.0061 3.7673 -0.7338 12 1 6.0560 5.1944 -0.5348 13 6 4.2964 -0.0140 0.0005 14 6 3.6022 -1.2353 0.0005 15 6 4.1283 -2.5927 0.0010 16 6 3.2147 -3.5412 0.0014 17 6 3.5239 -5.0162 0.0014 18 6 3.6281 -5.5076 1.4223 19 8 3.4681 -4.7389 2.3407 20 8 3.8996 -6.7990 1.6676 21 16 1.5943 -2.8735 0.0020 22 6 2.2004 -1.2210 0.0011 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6294 2.1111 0.0046 27 1 6.9337 1.5849 -1.6447 28 1 5.3764 -0.0066 0.0014 29 1 5.1871 -2.8055 0.0011 30 1 2.7271 -5.5545 -0.5117 31 1 4.4691 -5.1892 -0.5131 32 1 3.9569 -7.0672 2.5949 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725314255.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:04 Heat of formation + Delta-G solvation = -70.152559 kcal Electronic energy + Delta-G solvation = -18101.607041 eV Core-core repulsion = 15117.459249 eV Total energy + Delta-G solvation = -2984.147792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.061 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.13970 -38.21302 -36.21004 -35.17338 -33.90727 -31.46976 -30.66919 -27.32434 -25.90940 -25.31830 -22.62235 -21.22891 -19.96101 -19.44222 -18.03520 -16.92368 -16.53121 -16.11474 -15.85996 -15.25861 -14.44849 -14.29306 -13.50275 -13.29289 -13.07986 -12.93009 -12.57032 -12.29267 -11.88279 -11.78935 -11.59931 -11.44902 -11.31517 -11.07348 -10.94427 -10.72968 -10.49547 -10.23995 -9.86631 -9.75084 -9.51262 -9.08555 -8.20907 -7.36713 -6.83134 -6.65828 -4.39257 1.73469 2.28795 2.46857 2.64270 3.01998 3.03484 3.04178 3.07467 3.12850 3.54063 3.88351 4.50082 4.77570 5.19239 5.41574 5.49912 5.52181 5.78199 5.86837 6.13244 6.22674 6.35050 6.43706 6.50545 6.60110 6.74423 6.87277 7.08684 7.18636 7.44193 7.54206 7.72809 7.90423 7.95068 8.09473 8.50061 8.78076 8.80995 10.11396 Molecular weight = 276.06amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.005229 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.452778 B = 5353.187014 C = 6346.595312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.041 4.041 3 C -0.175 4.175 4 C 0.107 3.893 5 C -0.458 4.458 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.790 5.790 9 Si 0.909 3.091 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.265 1.265 13 C -0.141 4.141 14 C -0.054 4.054 15 C -0.080 4.080 16 C -0.182 4.182 17 C -0.034 4.034 18 C 0.472 3.528 19 O -0.494 6.494 20 O -0.523 6.523 21 S 0.014 5.986 22 C -0.216 4.216 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.282 0.718 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -9.947 1.155 10.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.046 4.046 3 C -0.196 4.196 4 C 0.104 3.896 5 C -0.488 4.488 6 H 0.098 0.902 7 C -0.142 4.142 8 N -0.415 5.415 9 Si 0.733 3.267 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.189 1.189 13 C -0.163 4.163 14 C -0.060 4.060 15 C -0.112 4.112 16 C -0.296 4.296 17 C -0.073 4.073 18 C 0.313 3.687 19 O -0.380 6.380 20 O -0.336 6.336 21 S 0.275 5.725 22 C -0.330 4.330 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.725 -10.346 0.848 11.028 hybrid contribution 2.077 1.060 0.721 2.441 sum -1.647 -9.286 1.569 9.560 Atomic orbital electron populations 1.20727 0.93202 1.01325 1.01144 1.18502 0.93739 0.91080 1.01275 1.20656 0.94608 0.95100 1.09255 1.17383 0.90574 0.93160 0.88511 1.19492 0.98012 0.95612 1.35664 0.90178 1.25903 0.98379 0.97439 0.92529 1.69842 1.17744 1.32281 1.21646 0.86347 0.78841 0.81440 0.80027 1.18752 1.20293 1.18946 1.21147 0.99408 0.88923 1.06834 1.19007 0.91621 0.92723 1.02605 1.20905 0.98937 0.91668 0.99710 1.22702 0.97675 0.95708 1.13521 1.19667 1.05609 0.91591 0.90424 1.23564 0.72715 0.79341 0.93099 1.90784 1.44459 1.56065 1.46670 1.84526 1.83696 1.29200 1.36146 1.83109 1.06125 0.99722 1.83573 1.21690 0.95649 0.93983 1.21684 0.92229 0.92858 0.92218 0.87876 0.90676 0.85877 0.85526 0.87042 0.86444 0.73458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 9.85 36.01 0.35 -1.58 16 2 C -0.04 -0.94 5.87 -104.70 -0.61 -1.55 16 3 C -0.18 -4.20 9.31 -39.39 -0.37 -4.57 16 4 C 0.11 2.81 5.56 -107.01 -0.59 2.22 16 5 C -0.46 -11.82 9.03 -37.82 -0.34 -12.16 16 6 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 7 C 0.08 1.86 5.12 -17.34 -0.09 1.77 16 8 N -0.79 -19.98 10.98 55.54 0.61 -19.37 16 9 Si 0.91 18.25 29.60 -169.99 -5.03 13.22 16 10 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 12 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 13 C -0.14 -3.67 8.75 -38.09 -0.33 -4.00 16 14 C -0.05 -1.31 6.03 -105.40 -0.64 -1.95 16 15 C -0.08 -1.65 10.21 -38.53 -0.39 -2.05 16 16 C -0.18 -3.30 4.86 -36.18 -0.18 -3.48 16 17 C -0.03 -0.44 6.24 -29.03 -0.18 -0.62 16 18 C 0.47 6.58 8.32 36.01 0.30 6.88 16 19 O -0.49 -9.04 16.79 -18.75 -0.31 -9.35 16 20 O -0.52 -5.34 13.42 -39.25 -0.53 -5.87 16 21 S 0.01 0.28 22.47 -107.50 -2.42 -2.14 16 22 C -0.22 -5.00 6.33 -38.03 -0.24 -5.24 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.92 7.57 -51.93 -0.39 0.53 16 25 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 26 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 27 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 28 H 0.12 3.29 6.15 -52.49 -0.32 2.97 16 29 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 30 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.41 2.49 9.10 45.56 0.41 2.91 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -30.58 297.69 -8.89 -39.47 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -2.38 Total: 5.88 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -3.31 Total: -26.32 kcal Atomic # 7 Polarization: -19.98 SS G_CDS: 0.61 Total: -19.37 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.84 Total: -15.22 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.42 Total: -2.14 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.58 -8.89 -39.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725314255.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.685 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds