Wall clock time and date at job start Thu Apr 9 2020 12:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37640 * 119.93369 * 2 1 4 4 C 1.38119 * 121.08936 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.27708 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47235 * 264.98171 * 5 4 3 7 7 O 1.20825 * 119.99502 * 359.97438 * 6 5 4 8 8 O 1.34229 * 119.99819 * 180.02562 * 6 5 4 9 9 C 1.39641 * 121.44830 * 359.97438 * 4 3 2 10 10 S 1.76065 * 130.62162 * 180.02562 * 9 4 3 11 11 C 1.75512 * 91.51161 * 179.97438 * 10 9 4 12 12 C 1.32724 * 110.66869 * 359.74100 * 11 10 9 13 13 C 1.39736 * 120.06196 * 0.02562 * 9 4 3 14 14 C 1.40327 * 119.92697 * 180.02562 * 2 1 3 15 15 C 1.40575 * 120.40606 * 359.97438 * 14 2 1 16 16 H 1.07999 * 120.00146 * 40.07467 * 15 14 2 17 17 C 1.39999 * 120.00103 * 220.08303 * 15 14 2 18 18 N 1.30837 * 119.99807 * 19.68077 * 17 15 14 19 19 Si 1.86795 * 120.00329 * 199.68341 * 17 15 14 20 20 H 1.48499 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47181 * 119.99663 * 19 17 15 22 22 H 1.48501 * 109.47538 * 239.99424 * 19 17 15 23 23 H 1.09004 * 109.46817 * 94.35948 * 1 2 3 24 24 H 1.08993 * 109.47149 * 214.36265 * 1 2 3 25 25 H 1.09004 * 109.46945 * 334.36857 * 1 2 3 26 26 H 1.08001 * 119.45808 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47098 * 24.97696 * 5 4 3 28 28 H 1.08994 * 109.47145 * 144.97913 * 5 4 3 29 29 H 0.96703 * 116.99437 * 179.97438 * 8 6 5 30 30 H 1.08004 * 124.66485 * 179.97438 * 11 10 9 31 31 H 1.08005 * 122.09383 * 180.02562 * 12 11 10 32 32 H 0.97000 * 119.99696 * 179.90277 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1939 1.1928 0.0000 4 6 3.5748 1.2206 -0.0005 5 6 4.2851 2.5498 0.0001 6 6 4.6310 2.9352 -1.4152 7 8 4.3318 2.2052 -2.3303 8 8 5.2723 4.0889 -1.6589 9 6 4.3272 0.0443 -0.0006 10 16 6.0707 -0.2013 -0.0006 11 6 5.8718 -1.9451 0.0002 12 6 4.5849 -2.2698 0.0060 13 6 3.6856 -1.1971 -0.0006 14 6 2.2072 -1.2162 -0.0005 15 6 1.5114 -2.4376 -0.0005 16 1 0.6220 -2.5525 -0.6024 17 6 1.9712 -3.5052 0.7797 18 7 2.7848 -3.2817 1.7797 19 14 1.4234 -5.2487 0.3931 20 1 0.5095 -5.2324 -0.7773 21 1 2.6115 -6.0835 0.0824 22 1 0.7131 -5.8163 1.5673 23 1 -0.3633 -0.0781 -1.0247 24 1 -0.3633 -0.8483 0.5800 25 1 -0.3633 0.9266 0.4446 26 1 1.6440 2.1223 0.0004 27 1 3.6350 3.3090 0.4348 28 1 5.1988 2.4732 0.5894 29 1 5.4730 4.2929 -2.5826 30 1 6.6848 -2.6561 0.0001 31 1 4.2524 -3.2974 0.0079 32 1 3.1023 -4.0213 2.3212 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725314432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:14 Heat of formation + Delta-G solvation = -64.518967 kcal Electronic energy + Delta-G solvation = -18873.168095 eV Core-core repulsion = 15889.264593 eV Total energy + Delta-G solvation = -2983.903501 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.061 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.80563 -38.22918 -35.74235 -34.58692 -34.05913 -32.21227 -28.95122 -28.30688 -26.05545 -24.46507 -22.19414 -21.79461 -19.66297 -18.67483 -17.84367 -17.65251 -16.06953 -15.73299 -15.58553 -15.11672 -14.63903 -13.96826 -13.47273 -12.95754 -12.92066 -12.67517 -12.46292 -12.11067 -11.84073 -11.68911 -11.37605 -11.22246 -11.11577 -11.01470 -10.85601 -10.63344 -10.35729 -10.13179 -10.04876 -9.62709 -9.40993 -9.08878 -8.05062 -7.14356 -7.08022 -6.50677 -4.54987 1.97248 2.49956 2.70212 2.71694 2.94770 2.98375 3.03228 3.11021 3.46805 3.78264 3.81983 4.43000 5.28072 5.43086 5.57523 5.90987 5.93744 6.00584 6.14333 6.30554 6.42895 6.63277 6.67389 6.78138 6.85195 6.88917 7.01157 7.02277 7.24057 7.35286 7.70132 7.71919 7.80559 8.01916 8.24130 8.34799 8.59440 8.68511 9.94835 Molecular weight = 276.06amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.006967 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.486409 B = 4017.754592 C = 4899.229582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.213 4.213 3 C -0.031 4.031 4 C -0.188 4.188 5 C -0.047 4.047 6 C 0.467 3.533 7 O -0.497 6.497 8 O -0.529 6.529 9 C -0.058 4.058 10 S -0.011 6.011 11 C -0.273 4.273 12 C -0.027 4.027 13 C -0.134 4.134 14 C 0.179 3.821 15 C -0.453 4.453 16 H 0.091 0.909 17 C 0.080 3.920 18 N -0.768 5.768 19 Si 0.900 3.100 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.272 1.272 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.400 0.600 30 H 0.143 0.857 31 H 0.126 0.874 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 5.315 -1.257 5.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.216 4.216 3 C -0.052 4.052 4 C -0.195 4.195 5 C -0.085 4.085 6 C 0.308 3.692 7 O -0.382 6.382 8 O -0.341 6.341 9 C -0.173 4.173 10 S 0.249 5.751 11 C -0.406 4.406 12 C -0.057 4.057 13 C -0.141 4.141 14 C 0.174 3.826 15 C -0.481 4.481 16 H 0.109 0.891 17 C -0.142 4.142 18 N -0.390 5.390 19 Si 0.724 3.276 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.197 1.197 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.257 0.743 30 H 0.160 0.840 31 H 0.144 0.856 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.230 5.734 -0.888 6.640 hybrid contribution -1.024 -1.695 -0.634 2.079 sum 2.206 4.039 -1.522 4.847 Atomic orbital electron populations 1.20333 0.92728 1.00491 0.99951 1.19496 0.94672 0.92340 1.15139 1.20088 0.91947 0.96456 0.96698 1.17600 0.92388 0.89210 1.20315 1.20021 1.01894 0.97338 0.89197 1.24152 0.73740 0.77556 0.93703 1.90722 1.49597 1.51123 1.46768 1.84582 1.72076 1.41529 1.35934 1.22058 0.93719 0.96911 1.04648 1.83290 1.05583 1.04334 1.81877 1.24573 0.99783 0.96159 1.20062 1.19800 0.91002 0.99800 0.95062 1.19063 0.94073 0.89872 1.11126 1.18246 0.88166 0.92105 0.84064 1.19476 1.10334 0.95287 1.22985 0.89115 1.25943 0.93403 1.01268 0.93551 1.69868 1.23680 1.34699 1.10784 0.86370 0.79899 0.81411 0.79927 1.18019 1.19372 1.19697 0.93970 0.91964 0.94246 0.88537 0.88168 0.88715 0.74289 0.83951 0.85616 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 9.38 36.01 0.34 -1.20 16 2 C -0.21 -4.94 5.92 -104.05 -0.62 -5.56 16 3 C -0.03 -0.68 9.18 -39.84 -0.37 -1.04 16 4 C -0.19 -4.09 4.41 -104.14 -0.46 -4.55 16 5 C -0.05 -0.81 5.72 -29.03 -0.17 -0.98 16 6 C 0.47 8.17 8.32 36.01 0.30 8.47 16 7 O -0.50 -10.61 16.79 -18.75 -0.31 -10.92 16 8 O -0.53 -7.11 13.42 -39.25 -0.53 -7.64 16 9 C -0.06 -1.38 6.29 -38.50 -0.24 -1.62 16 10 S -0.01 -0.23 22.67 -107.50 -2.44 -2.67 16 11 C -0.27 -5.91 11.11 28.85 0.32 -5.59 16 12 C -0.03 -0.66 8.27 -40.81 -0.34 -1.00 16 13 C -0.13 -3.41 5.52 -104.75 -0.58 -3.99 16 14 C 0.18 4.55 5.49 -104.30 -0.57 3.98 16 15 C -0.45 -11.11 7.62 -38.04 -0.29 -11.40 16 16 H 0.09 2.14 7.59 -52.49 -0.40 1.74 16 17 C 0.08 1.86 3.87 -17.32 -0.07 1.79 16 18 N -0.77 -18.59 10.83 55.55 0.60 -17.99 16 19 Si 0.90 17.42 29.60 -169.99 -5.03 12.39 16 20 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 1.25 7.23 -51.93 -0.38 0.87 16 25 H 0.04 0.67 8.05 -51.93 -0.42 0.26 16 26 H 0.10 1.78 8.03 -52.49 -0.42 1.36 16 27 H 0.10 1.45 8.01 -51.93 -0.42 1.03 16 28 H 0.09 1.56 7.73 -51.93 -0.40 1.16 16 29 H 0.40 3.63 9.10 45.56 0.41 4.04 16 30 H 0.14 2.66 8.06 -52.48 -0.42 2.23 16 31 H 0.13 3.01 6.10 -52.48 -0.32 2.69 16 32 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 292.11 15.07 4.40 4.40 Total: -1.00 -29.13 292.11 -8.36 -37.49 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -2.32 Total: 7.64 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -2.74 Total: -22.69 kcal Atomic # 7 Polarization: -18.59 SS G_CDS: 0.60 Total: -17.99 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.84 Total: -18.56 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.44 Total: -2.67 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.13 -8.36 -37.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725314432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.034 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds