Wall clock time and date at job start Thu Apr 9 2020 12:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37930 * 120.06079 * 2 1 4 4 C 1.37738 * 120.76437 * 180.02562 * 3 2 1 5 5 C 1.41393 * 120.90749 * 359.91670 * 4 3 2 6 6 C 1.45463 * 129.17371 * 180.02562 * 5 4 3 7 7 C 1.31864 * 114.88326 * 180.02562 * 6 5 4 8 8 C 1.50708 * 124.32889 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.46840 * 90.00088 * 8 7 6 10 10 O 1.20824 * 120.00236 * 359.97438 * 9 8 7 11 11 O 1.34231 * 119.99578 * 179.97438 * 9 8 7 12 12 S 1.75295 * 111.33692 * 0.02562 * 7 6 5 13 13 C 1.39400 * 118.98766 * 0.08260 * 5 4 3 14 14 C 1.40374 * 120.05830 * 180.02562 * 2 1 3 15 15 C 1.40931 * 120.11423 * 359.97438 * 14 2 1 16 16 H 1.08005 * 120.00013 * 321.41147 * 15 14 2 17 17 C 1.39918 * 120.00183 * 141.40952 * 15 14 2 18 18 N 1.30869 * 120.00162 * 339.48003 * 17 15 14 19 19 Si 1.86805 * 120.00256 * 159.47784 * 17 15 14 20 20 H 1.48495 * 109.46975 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46916 * 120.00297 * 19 17 15 22 22 H 1.48496 * 109.47212 * 240.00138 * 19 17 15 23 23 H 1.08994 * 109.47277 * 266.04795 * 1 2 3 24 24 H 1.09004 * 109.46575 * 26.04505 * 1 2 3 25 25 H 1.08995 * 109.47338 * 146.04260 * 1 2 3 26 26 H 1.08004 * 119.61236 * 0.04193 * 3 2 1 27 27 H 1.08002 * 119.54760 * 180.02562 * 4 3 2 28 28 H 1.08003 * 122.55600 * 0.04263 * 6 5 4 29 29 H 1.08996 * 109.46662 * 209.99645 * 8 7 6 30 30 H 1.08990 * 109.47303 * 330.00116 * 8 7 6 31 31 H 0.96704 * 116.99557 * 180.02562 * 11 9 8 32 32 H 0.96997 * 120.00594 * 180.27281 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1938 0.0000 4 6 3.5752 1.2107 -0.0005 5 6 4.3163 0.0066 0.0007 6 6 5.7583 -0.1849 0.0009 7 6 6.1509 -1.4437 0.0016 8 6 7.5921 -1.8846 0.0014 9 6 8.0729 -2.0305 1.4222 10 8 7.3225 -1.7998 2.3407 11 8 9.3348 -2.4169 1.6673 12 16 4.7820 -2.5387 0.0014 13 6 3.6320 -1.2079 0.0007 14 6 2.2101 -1.2150 -0.0005 15 6 1.5092 -2.4376 -0.0005 16 1 0.6065 -2.5426 0.5832 17 6 1.9825 -3.5154 -0.7568 18 7 2.8058 -3.3050 -1.7521 19 14 1.4395 -5.2549 -0.3457 20 1 0.5132 -5.2231 0.8145 21 1 0.7446 -5.8464 -1.5173 22 1 2.6285 -6.0779 -0.0080 23 1 -0.3633 -0.0708 1.0252 24 1 -0.3632 0.9234 -0.4513 25 1 -0.3634 -0.8523 -0.5740 26 1 1.6526 2.1260 0.0007 27 1 4.0963 2.1567 -0.0001 28 1 6.4542 0.6410 0.0007 29 1 7.6789 -2.8422 -0.5117 30 1 8.1996 -1.1402 -0.5131 31 1 9.5972 -2.4968 2.5946 32 1 3.1308 -4.0518 -2.2789 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725314577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:22 Heat of formation + Delta-G solvation = -69.230499 kcal Electronic energy + Delta-G solvation = -18549.502357 eV Core-core repulsion = 15565.394548 eV Total energy + Delta-G solvation = -2984.107808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.061 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04514 -38.09042 -36.12732 -35.15080 -33.50305 -31.63955 -29.90519 -28.39266 -25.56814 -24.62420 -22.12516 -21.76772 -19.93429 -18.96062 -17.94975 -17.41914 -16.32846 -15.90896 -15.55959 -15.08655 -14.37476 -14.12501 -13.49733 -13.13960 -12.92822 -12.79370 -12.65078 -12.22049 -11.75228 -11.58249 -11.40633 -11.34425 -11.14372 -11.05275 -10.93379 -10.54378 -10.42127 -10.14995 -9.79196 -9.57682 -9.39476 -8.87068 -8.14934 -7.09350 -6.94700 -6.14555 -4.47472 1.85165 2.38271 2.74616 2.78201 2.98544 3.07872 3.12404 3.20719 3.49215 3.65335 3.92330 4.56626 4.93495 5.33485 5.34816 5.54402 5.61943 6.07565 6.08207 6.31018 6.37773 6.50685 6.58180 6.66363 6.79867 6.82792 6.92908 7.05690 7.29703 7.42283 7.58153 7.73465 7.94449 8.03879 8.12931 8.38880 8.70431 8.81304 10.11025 Molecular weight = 276.06amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.007786 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.561694 B = 3595.534920 C = 4897.569050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.184 4.184 3 C -0.085 4.085 4 C -0.195 4.195 5 C -0.063 4.063 6 C -0.106 4.106 7 C -0.211 4.211 8 C -0.032 4.032 9 C 0.472 3.528 10 O -0.495 6.495 11 O -0.524 6.524 12 S 0.129 5.871 13 C -0.150 4.150 14 C 0.151 3.849 15 C -0.470 4.470 16 H 0.086 0.914 17 C 0.072 3.928 18 N -0.772 5.772 19 Si 0.894 3.106 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.268 1.268 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.406 0.594 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.543 0.190 1.433 7.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.189 4.189 3 C -0.104 4.104 4 C -0.217 4.217 5 C -0.070 4.070 6 C -0.140 4.140 7 C -0.327 4.327 8 C -0.071 4.071 9 C 0.313 3.687 10 O -0.381 6.381 11 O -0.336 6.336 12 S 0.397 5.603 13 C -0.267 4.267 14 C 0.145 3.855 15 C -0.500 4.500 16 H 0.104 0.896 17 C -0.147 4.147 18 N -0.397 5.397 19 Si 0.718 3.282 20 H -0.182 1.182 21 H -0.199 1.199 22 H -0.193 1.193 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.264 0.736 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.261 -1.456 1.083 7.484 hybrid contribution 0.218 0.761 0.648 1.023 sum 7.479 -0.694 1.731 7.708 Atomic orbital electron populations 1.20357 0.92871 1.00529 0.99938 1.19652 0.94565 0.92215 1.12455 1.20262 0.93440 0.96259 1.00476 1.20158 0.93251 0.94392 1.13893 1.18888 0.90876 0.93749 1.03515 1.20635 0.94454 0.95370 1.03522 1.23479 0.97744 0.99343 1.12106 1.19636 0.92429 1.04884 0.90134 1.23629 0.78940 0.72938 0.93194 1.90772 1.55519 1.45075 1.46691 1.84537 1.31880 1.81183 1.36027 1.83705 0.91957 1.08088 1.76548 1.22570 0.97329 0.93472 1.13320 1.16725 0.87846 0.92649 0.88286 1.19366 1.10156 0.94863 1.25573 0.89625 1.25830 0.94039 1.01088 0.93756 1.69804 1.23958 1.34348 1.11634 0.86433 0.79887 0.82104 0.79768 1.18236 1.19886 1.19319 0.93892 0.94239 0.91846 0.88690 0.88846 0.86436 0.87137 0.86899 0.73603 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.37 36.01 0.34 -1.30 16 2 C -0.18 -4.42 5.94 -103.93 -0.62 -5.03 16 3 C -0.08 -1.90 9.61 -39.88 -0.38 -2.28 16 4 C -0.20 -4.43 10.10 -38.56 -0.39 -4.82 16 5 C -0.06 -1.52 6.04 -105.39 -0.64 -2.16 16 6 C -0.11 -2.24 10.22 -38.61 -0.39 -2.63 16 7 C -0.21 -4.21 4.88 -36.21 -0.18 -4.39 16 8 C -0.03 -0.47 6.25 -29.03 -0.18 -0.65 16 9 C 0.47 7.16 8.32 36.01 0.30 7.46 16 10 O -0.49 -9.58 16.79 -18.75 -0.31 -9.90 16 11 O -0.52 -5.88 13.42 -39.26 -0.53 -6.40 16 12 S 0.13 3.00 19.79 -107.50 -2.13 0.88 16 13 C -0.15 -3.89 5.74 -37.63 -0.22 -4.10 16 14 C 0.15 3.97 5.37 -106.56 -0.57 3.40 16 15 C -0.47 -12.16 7.66 -37.93 -0.29 -12.45 16 16 H 0.09 2.15 7.52 -52.48 -0.39 1.75 16 17 C 0.07 1.77 4.28 -17.33 -0.07 1.69 16 18 N -0.77 -19.42 10.61 55.55 0.59 -18.83 16 19 Si 0.89 18.66 29.61 -169.99 -5.03 13.63 16 20 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.70 8.06 -51.93 -0.42 0.29 16 25 H 0.06 1.33 7.18 -51.93 -0.37 0.96 16 26 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 27 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 29 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.41 2.84 9.10 45.56 0.41 3.26 16 32 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 294.06 15.07 4.43 4.43 Total: -1.00 -30.68 294.06 -8.72 -39.40 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -2.44 Total: 4.07 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -3.29 Total: -27.27 kcal Atomic # 7 Polarization: -19.42 SS G_CDS: 0.59 Total: -18.83 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.84 Total: -16.30 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.13 Total: 0.88 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.68 -8.72 -39.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725314577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.833 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds