Wall clock time and date at job start Thu Apr 9 2020 12:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34858 * 117.00221 * 2 1 4 4 O 1.21570 * 119.99795 * 0.02562 * 3 2 1 5 5 C 1.46871 * 119.99886 * 179.97438 * 3 2 1 6 6 C 1.35248 * 124.73175 * 179.97438 * 5 3 2 7 7 C 1.39806 * 115.44142 * 180.02562 * 6 5 3 8 8 C 1.42301 * 128.37104 * 180.02562 * 7 6 5 9 9 C 1.35021 * 120.88824 * 180.02562 * 8 7 6 10 10 C 1.41379 * 120.41995 * 0.26874 * 9 8 7 11 11 C 1.40900 * 120.18771 * 179.72707 * 10 9 8 12 12 H 1.07996 * 120.00629 * 205.67679 * 11 10 9 13 13 C 1.40090 * 119.99639 * 25.67401 * 11 10 9 14 14 N 1.30753 * 120.00231 * 15.42039 * 13 11 10 15 15 Si 1.86798 * 120.00023 * 195.42303 * 13 11 10 16 16 H 1.48499 * 109.47378 * 59.99936 * 15 13 11 17 17 H 1.48504 * 109.47316 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46888 * 299.99953 * 15 13 11 19 19 C 1.40289 * 119.63248 * 359.46811 * 10 9 8 20 20 C 1.50703 * 119.99515 * 180.27190 * 19 10 9 21 21 C 1.39097 * 120.01008 * 0.51542 * 19 10 9 22 22 S 1.75468 * 124.73664 * 0.03127 * 5 3 2 23 23 H 1.09001 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46919 * 300.00042 * 1 2 3 25 25 H 1.08997 * 109.46692 * 59.99923 * 1 2 3 26 26 H 1.07999 * 122.28343 * 0.07456 * 6 5 3 27 27 H 1.08001 * 119.55202 * 0.02562 * 8 7 6 28 28 H 1.08009 * 119.79153 * 179.97438 * 9 8 7 29 29 H 0.96997 * 120.00183 * 180.02562 * 14 13 11 30 30 H 1.09005 * 109.47139 * 270.24494 * 20 19 10 31 31 H 1.08995 * 109.47160 * 30.23755 * 20 19 10 32 32 H 1.08995 * 109.46949 * 150.24231 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2016 0.0000 4 8 1.4022 2.2211 0.0005 5 6 3.5310 1.2783 0.0006 6 6 4.2424 2.4286 0.0001 7 6 5.6321 2.2754 0.0002 8 6 6.6324 3.2874 0.0004 9 6 7.9437 2.9659 0.0000 10 6 8.3487 1.6114 -0.0063 11 6 9.7185 1.2814 -0.0125 12 1 10.0447 0.3369 -0.4223 13 6 10.6574 2.1786 0.5129 14 7 10.2630 3.1683 1.2709 15 14 12.4728 1.9611 0.1303 16 1 12.6825 2.0412 -1.3376 17 1 13.2519 3.0326 0.8013 18 1 12.9273 0.6363 0.6238 19 6 7.3791 0.5975 -0.0008 20 6 7.8016 -0.8491 -0.0013 21 6 6.0277 0.9272 -0.0001 22 16 4.6049 -0.1094 0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 3.7693 3.3995 0.0005 27 1 6.3386 4.3267 0.0008 28 1 8.6882 3.7485 -0.0004 29 1 10.9131 3.7897 1.6344 30 1 7.9030 -1.1977 -1.0291 31 1 8.7580 -0.9484 0.5120 32 1 7.0494 -1.4474 0.5129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725316558.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 12:05:39 Heat of formation + Delta-G solvation = -63.890442 kcal Electronic energy + Delta-G solvation = -18065.693410 eV Core-core repulsion = 15081.817164 eV Total energy + Delta-G solvation = -2983.876246 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.061 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.81926 -38.47560 -36.14574 -35.18381 -33.27150 -31.45693 -29.45640 -27.80130 -26.38930 -25.45313 -23.13406 -21.75658 -20.03637 -19.35253 -17.81093 -17.44625 -16.36435 -15.98972 -15.86291 -15.02683 -14.43145 -14.08978 -13.69582 -13.32201 -13.19229 -12.90650 -12.62142 -12.17598 -11.91513 -11.78399 -11.75295 -11.51479 -11.35409 -11.20423 -10.86855 -10.58862 -10.55737 -10.14474 -10.03098 -9.92777 -9.55334 -9.37226 -8.49911 -7.55937 -7.33015 -6.76514 -4.75463 1.15441 2.46246 2.58970 2.67192 2.82096 2.84131 2.91840 2.94694 3.10250 3.54509 3.58231 4.24525 5.20934 5.21919 5.28281 5.34240 5.63841 5.80321 6.01353 6.17144 6.28874 6.41321 6.50888 6.53223 6.59466 6.63550 6.74526 6.86442 7.00301 7.14474 7.48470 7.52965 7.62282 7.75758 8.09655 8.18587 8.34580 8.46010 9.61128 Molecular weight = 276.06amu Principal moments of inertia in cm(-1) A = 0.043873 B = 0.004332 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.048922 B = 6462.423221 C = 7015.043671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.358 6.358 3 C 0.545 3.455 4 O -0.530 6.530 5 C -0.321 4.321 6 C 0.030 3.970 7 C -0.222 4.222 8 C -0.061 4.061 9 C -0.140 4.140 10 C 0.140 3.860 11 C -0.410 4.410 12 H 0.094 0.906 13 C 0.069 3.931 14 N -0.760 5.760 15 Si 0.921 3.079 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.259 1.259 19 C -0.201 4.201 20 C -0.084 4.084 21 C -0.042 4.042 22 S 0.063 5.937 23 H 0.097 0.903 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.131 0.869 27 H 0.100 0.900 28 H 0.128 0.872 29 H 0.293 0.707 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -3.286 -1.403 5.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.393 3.607 4 O -0.422 6.422 5 C -0.436 4.436 6 C -0.002 4.002 7 C -0.226 4.226 8 C -0.081 4.081 9 C -0.159 4.159 10 C 0.133 3.867 11 C -0.437 4.437 12 H 0.112 0.888 13 C -0.155 4.155 14 N -0.382 5.382 15 Si 0.743 3.257 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.183 1.183 19 C -0.211 4.211 20 C -0.141 4.141 21 C -0.158 4.158 22 S 0.326 5.674 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.149 0.851 27 H 0.118 0.882 28 H 0.146 0.854 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.353 -4.328 -1.240 6.263 hybrid contribution 0.669 1.669 0.003 1.799 sum -3.684 -2.659 -1.237 4.709 Atomic orbital electron populations 1.23154 0.77010 1.03099 1.02197 1.86611 1.22681 1.33107 1.85145 1.19949 0.87545 0.80976 0.72198 1.90784 1.66375 1.35967 1.49097 1.21905 0.91952 0.98153 1.31596 1.20255 0.92398 0.97018 0.90494 1.17636 0.91763 0.93091 1.20133 1.20415 0.92483 0.96158 0.99084 1.21026 0.94510 0.97172 1.03182 1.17472 0.92383 0.90759 0.86103 1.19931 0.90898 1.02947 1.29942 0.88777 1.26234 1.03123 0.93577 0.92533 1.69749 1.38464 1.10826 1.19137 0.86121 0.79508 0.79653 0.80376 1.18187 1.19788 1.18324 1.19014 0.89106 0.95204 1.17748 1.20381 1.00827 0.92764 1.00083 1.22448 0.96262 0.95246 1.01800 1.83559 0.94918 1.07631 1.81319 0.88472 0.92231 0.92244 0.85147 0.88188 0.85390 0.89572 0.93598 0.91699 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.57 101.05 1.07 1.56 16 2 O -0.36 -6.19 10.39 -40.93 -0.43 -6.61 16 3 C 0.54 10.83 7.94 34.22 0.27 11.10 16 4 O -0.53 -11.18 16.55 -19.32 -0.32 -11.50 16 5 C -0.32 -6.72 6.37 -37.16 -0.24 -6.95 16 6 C 0.03 0.63 9.83 -40.06 -0.39 0.24 16 7 C -0.22 -4.99 5.87 -106.90 -0.63 -5.62 16 8 C -0.06 -1.33 9.99 -39.16 -0.39 -1.72 16 9 C -0.14 -3.23 8.57 -39.53 -0.34 -3.57 16 10 C 0.14 3.30 5.56 -106.92 -0.59 2.70 16 11 C -0.41 -9.20 8.10 -37.88 -0.31 -9.51 16 12 H 0.09 1.99 6.85 -52.49 -0.36 1.63 16 13 C 0.07 1.45 5.18 -17.32 -0.09 1.36 16 14 N -0.76 -16.68 10.87 55.55 0.60 -16.08 16 15 Si 0.92 15.72 29.59 -169.99 -5.03 10.69 16 16 H -0.26 -4.39 7.11 56.52 0.40 -3.99 16 17 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 18 H -0.26 -4.39 7.11 56.52 0.40 -3.99 16 19 C -0.20 -4.57 5.97 -103.53 -0.62 -5.19 16 20 C -0.08 -1.64 9.24 36.01 0.33 -1.31 16 21 C -0.04 -0.95 6.29 -38.41 -0.24 -1.19 16 22 S 0.06 1.28 22.33 -107.50 -2.40 -1.12 16 23 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.13 2.55 7.99 -52.49 -0.42 2.13 16 27 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.13 2.94 6.13 -52.48 -0.32 2.62 16 29 H 0.29 5.77 8.29 -40.82 -0.34 5.43 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.24 6.77 -51.93 -0.35 0.89 16 32 H 0.04 0.77 7.58 -51.93 -0.39 0.37 16 LS Contribution 294.74 15.07 4.44 4.44 Total: -1.00 -26.05 294.74 -8.39 -34.44 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.09 Total: 3.85 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -2.17 Total: -18.10 kcal Atomic # 7 Polarization: -16.68 SS G_CDS: 0.60 Total: -16.08 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.74 Total: -18.12 kcal Atomic # 14 Polarization: 15.72 SS G_CDS: -5.03 Total: 10.69 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.40 Total: -1.12 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.05 -8.39 -34.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725316558.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.447 kcal (2) G-P(sol) polarization free energy of solvation -26.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds