Wall clock time and date at job start Thu Apr 9 2020 14:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46825 * 2 1 4 4 C 1.53006 * 109.46970 * 240.00311 * 2 1 3 5 5 C 1.50698 * 109.47311 * 65.00088 * 4 2 1 6 6 H 1.07997 * 119.99872 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99827 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00204 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47471 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47141 * 119.99713 * 9 7 5 12 12 H 1.48501 * 109.47141 * 239.99617 * 9 7 5 13 13 C 1.50699 * 109.46925 * 120.00470 * 2 1 3 14 14 N 1.31137 * 126.54648 * 240.30184 * 13 2 1 15 15 C 1.34498 * 105.61046 * 180.12402 * 14 13 2 16 16 C 1.50698 * 126.28552 * 179.90537 * 15 14 13 17 17 H 1.09004 * 109.35681 * 359.42990 * 16 15 14 18 18 C 1.52879 * 109.35569 * 239.71150 * 16 15 14 19 19 C 1.53301 * 108.58161 * 185.26800 * 18 16 15 20 20 C 1.52874 * 108.73970 * 74.35081 * 19 18 16 21 21 C 1.52121 * 110.49045 * 305.38709 * 20 19 18 22 22 H 1.08996 * 114.29927 * 166.06338 * 21 20 19 23 23 C 1.52303 * 119.71281 * 310.13427 * 21 20 19 24 24 C 1.52067 * 120.08911 * 21.36461 * 21 20 19 25 25 H 1.08990 * 116.53764 * 143.19588 * 24 21 20 26 26 N 1.29943 * 107.42420 * 359.63587 * 15 14 13 27 27 O 1.21293 * 110.25509 * 0.23253 * 26 15 14 28 28 H 1.08996 * 109.47647 * 299.99916 * 1 2 3 29 29 H 1.09002 * 109.47328 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46652 * 185.00331 * 4 2 1 32 32 H 1.08997 * 109.46897 * 305.00096 * 4 2 1 33 33 H 0.97003 * 119.99815 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.62072 * 65.53905 * 18 16 15 35 35 H 1.08998 * 109.76739 * 305.08559 * 18 16 15 36 36 H 1.09002 * 109.61801 * 194.17240 * 19 18 16 37 37 H 1.08998 * 109.61633 * 314.53193 * 19 18 16 38 38 H 1.08998 * 109.26659 * 65.46617 * 20 19 18 39 39 H 1.08999 * 109.26910 * 184.93601 * 20 19 18 40 40 H 1.09000 * 117.53581 * 2.57729 * 23 21 20 41 41 H 1.09000 * 117.59748 * 217.30513 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9923 -0.4022 -3.7283 8 7 2.6755 -1.5193 -3.8513 9 14 1.4988 0.5630 -5.2496 10 1 0.7424 1.7746 -4.8434 11 1 2.7172 0.9669 -5.9965 12 1 0.6441 -0.2854 -6.1184 13 6 2.0323 -0.7105 1.2304 14 7 2.7846 -0.1992 2.1750 15 6 2.9811 -1.1934 3.0592 16 6 3.7871 -1.1106 4.3298 17 1 4.2061 -0.1091 4.4272 18 6 4.9232 -2.1322 4.2767 19 6 5.6493 -2.1259 5.6268 20 6 4.7727 -2.8348 6.6593 21 6 3.3896 -2.2031 6.7071 22 1 2.6438 -2.7960 7.2365 23 6 3.2541 -0.6918 6.8383 24 6 2.8794 -1.3948 5.5244 25 1 1.8181 -1.4862 5.2937 26 7 2.3436 -2.2369 2.6194 27 8 1.7919 -1.9805 1.5701 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7197 -1.2953 33 1 2.9227 -1.8422 -4.7319 34 1 5.6214 -1.8623 3.4844 35 1 4.5173 -3.1253 4.0841 36 1 6.6007 -2.6497 5.5331 37 1 5.8271 -1.0977 5.9419 38 1 4.6760 -3.8861 6.3879 39 1 5.2401 -2.7588 7.6410 40 1 4.1712 -0.1029 6.8510 41 1 2.4408 -0.3095 7.4551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691655453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:05 Heat of formation + Delta-G solvation = 58.534563 kcal Electronic energy + Delta-G solvation = -21204.417442 eV Core-core repulsion = 18087.056012 eV Total energy + Delta-G solvation = -3117.361430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.08193 -39.85162 -35.87644 -35.34055 -33.31419 -32.64740 -31.57537 -30.00111 -27.13415 -25.58724 -24.62028 -23.08958 -22.92544 -22.46980 -21.27424 -19.61341 -18.47484 -17.49313 -16.95952 -16.51955 -16.26835 -14.70759 -14.60354 -14.52097 -14.34187 -14.02894 -13.73748 -13.40290 -12.71716 -12.61042 -12.49705 -12.12237 -11.94449 -11.64933 -11.40764 -11.32067 -11.21980 -11.10151 -10.99423 -10.89621 -10.62073 -10.54881 -10.45425 -10.20106 -10.08301 -9.85641 -9.78198 -9.24082 -9.13635 -8.45117 -6.08755 -4.12660 1.66260 2.65570 3.27836 3.35508 3.38401 3.42400 3.52711 3.81417 4.31880 4.39147 4.50966 4.60715 4.70706 4.80040 4.92155 4.99848 5.17212 5.26849 5.27969 5.37696 5.43543 5.56902 5.64958 5.73429 5.77579 5.82173 5.85077 5.91274 5.96072 6.02583 6.05053 6.10033 6.21332 6.29797 6.40640 6.57541 6.68646 6.83141 7.48528 7.56700 7.86929 8.23070 8.65669 8.91982 9.51878 11.02595 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.038962 B = 0.003412 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.472966 B = 8204.049304 C = 8523.348595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.105 0.895 4 C 0.029 3.971 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.218 3.782 14 N -0.501 5.501 15 C 0.168 3.832 16 C 0.042 3.958 17 H 0.100 0.900 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.136 4.136 22 H 0.099 0.901 23 C -0.178 4.178 24 C -0.138 4.138 25 H 0.102 0.898 26 N -0.392 5.392 27 O 0.074 5.926 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.029 0.971 33 H 0.262 0.738 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -0.120 19.348 19.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.123 0.877 4 C -0.009 4.009 5 C -0.558 4.558 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.002 4.002 14 N -0.235 5.235 15 C -0.105 4.105 16 C 0.022 3.978 17 H 0.119 0.881 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.127 4.127 21 C -0.154 4.154 22 H 0.117 0.883 23 C -0.215 4.215 24 C -0.157 4.157 25 H 0.120 0.880 26 N -0.102 5.102 27 O 0.018 5.982 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.316 -0.683 19.849 19.995 hybrid contribution -0.316 0.468 -1.094 1.231 sum 2.000 -0.215 18.754 18.862 Atomic orbital electron populations 1.21778 0.93092 1.02509 1.01910 1.20340 0.96494 0.98847 0.86502 0.87691 1.19244 0.96840 0.96073 0.88766 1.21097 1.35773 1.08650 0.90324 0.91893 1.25007 0.94988 0.95032 0.99242 1.69981 1.38297 1.21007 1.23683 0.86489 0.78313 0.80033 0.82900 1.19568 1.20999 1.20970 1.29579 0.91596 0.81743 0.97247 1.71939 1.18433 1.29613 1.03483 1.25566 1.00050 0.85651 0.99237 1.18944 0.92430 1.01355 0.85071 0.88146 1.21634 0.96252 0.99426 0.97812 1.21591 0.98362 1.01180 0.94552 1.20881 0.93004 0.99588 0.99186 1.21864 0.98725 0.93761 1.01078 0.88275 1.23159 1.03237 0.94984 1.00086 1.22086 0.99514 1.05381 0.88698 0.87987 1.74532 1.13313 1.23918 0.98464 1.85281 1.54221 1.30065 1.28616 0.94118 0.89670 0.92337 0.96016 0.95272 0.92846 0.91230 0.90728 0.91196 0.91562 0.91305 0.91382 0.88391 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.98 37.16 0.33 -2.00 16 2 C 0.00 -0.03 2.81 -91.77 -0.26 -0.29 16 3 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 4 C 0.03 0.70 4.43 -27.88 -0.12 0.58 16 5 C -0.52 -13.66 8.41 -34.44 -0.29 -13.95 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 9 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.22 4.30 7.02 -13.06 -0.09 4.21 16 14 N -0.50 -9.68 11.55 -9.87 -0.11 -9.79 16 15 C 0.17 2.94 6.57 -156.37 -1.03 1.91 16 16 C 0.04 0.56 2.59 -91.99 -0.24 0.32 16 17 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 18 C -0.11 -1.35 5.18 -26.64 -0.14 -1.49 16 19 C -0.12 -1.07 5.69 -26.64 -0.15 -1.22 16 20 C -0.09 -0.76 5.94 -27.24 -0.16 -0.92 16 21 C -0.14 -1.30 6.01 -91.90 -0.55 -1.85 16 22 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.18 -1.65 9.66 -26.75 -0.26 -1.91 16 24 C -0.14 -1.63 5.61 -90.91 -0.51 -2.14 16 25 H 0.10 1.36 7.91 -51.93 -0.41 0.95 16 26 N -0.39 -7.40 12.16 30.89 0.38 -7.03 16 27 O 0.07 1.49 11.31 18.11 0.20 1.69 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.56 7.12 -51.93 -0.37 0.19 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.83 7.27 -51.93 -0.38 0.46 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -29.24 333.79 -8.86 -38.10 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.51 Total: -1.33 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -3.56 Total: -17.22 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 1.00 Total: -42.00 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.20 Total: 1.69 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.24 -8.86 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691655453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.632 kcal (2) G-P(sol) polarization free energy of solvation -29.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds