Wall clock time and date at job start Thu Apr 9 2020 14:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46825 * 2 1 4 4 C 1.53006 * 109.46970 * 240.00311 * 2 1 3 5 5 C 1.50698 * 109.47311 * 65.00088 * 4 2 1 6 6 H 1.07997 * 119.99872 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99827 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00204 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47471 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47141 * 119.99713 * 9 7 5 12 12 H 1.48501 * 109.47141 * 239.99617 * 9 7 5 13 13 C 1.50699 * 109.46925 * 120.00470 * 2 1 3 14 14 N 1.31137 * 126.54648 * 240.30184 * 13 2 1 15 15 C 1.34498 * 105.61046 * 180.12402 * 14 13 2 16 16 C 1.50698 * 126.28552 * 179.90537 * 15 14 13 17 17 H 1.09004 * 109.35681 * 359.42990 * 16 15 14 18 18 C 1.52879 * 109.35569 * 239.71150 * 16 15 14 19 19 C 1.53301 * 108.58161 * 185.26800 * 18 16 15 20 20 C 1.52874 * 108.73970 * 74.35081 * 19 18 16 21 21 C 1.52121 * 110.49045 * 305.38709 * 20 19 18 22 22 H 1.08996 * 114.29927 * 166.06338 * 21 20 19 23 23 C 1.52303 * 119.71281 * 310.13427 * 21 20 19 24 24 C 1.52067 * 120.08911 * 21.36461 * 21 20 19 25 25 H 1.08990 * 116.53764 * 143.19588 * 24 21 20 26 26 N 1.29943 * 107.42420 * 359.63587 * 15 14 13 27 27 O 1.21293 * 110.25509 * 0.23253 * 26 15 14 28 28 H 1.08996 * 109.47647 * 299.99916 * 1 2 3 29 29 H 1.09002 * 109.47328 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46652 * 185.00331 * 4 2 1 32 32 H 1.08997 * 109.46897 * 305.00096 * 4 2 1 33 33 H 0.97003 * 119.99815 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.62072 * 65.53905 * 18 16 15 35 35 H 1.08998 * 109.76739 * 305.08559 * 18 16 15 36 36 H 1.09002 * 109.61801 * 194.17240 * 19 18 16 37 37 H 1.08998 * 109.61633 * 314.53193 * 19 18 16 38 38 H 1.08998 * 109.26659 * 65.46617 * 20 19 18 39 39 H 1.08999 * 109.26910 * 184.93601 * 20 19 18 40 40 H 1.09000 * 117.53581 * 2.57729 * 23 21 20 41 41 H 1.09000 * 117.59748 * 217.30513 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9923 -0.4022 -3.7283 8 7 2.6755 -1.5193 -3.8513 9 14 1.4988 0.5630 -5.2496 10 1 0.7424 1.7746 -4.8434 11 1 2.7172 0.9669 -5.9965 12 1 0.6441 -0.2854 -6.1184 13 6 2.0323 -0.7105 1.2304 14 7 2.7846 -0.1992 2.1750 15 6 2.9811 -1.1934 3.0592 16 6 3.7871 -1.1106 4.3298 17 1 4.2061 -0.1091 4.4272 18 6 4.9232 -2.1322 4.2767 19 6 5.6493 -2.1259 5.6268 20 6 4.7727 -2.8348 6.6593 21 6 3.3896 -2.2031 6.7071 22 1 2.6438 -2.7960 7.2365 23 6 3.2541 -0.6918 6.8383 24 6 2.8794 -1.3948 5.5244 25 1 1.8181 -1.4862 5.2937 26 7 2.3436 -2.2369 2.6194 27 8 1.7919 -1.9805 1.5701 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7197 -1.2953 33 1 2.9227 -1.8422 -4.7319 34 1 5.6214 -1.8623 3.4844 35 1 4.5173 -3.1253 4.0841 36 1 6.6007 -2.6497 5.5331 37 1 5.8271 -1.0977 5.9419 38 1 4.6760 -3.8861 6.3879 39 1 5.2401 -2.7588 7.6410 40 1 4.1712 -0.1029 6.8510 41 1 2.4408 -0.3095 7.4551 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691655453.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:04 Heat of formation + Delta-G solvation = 42.385488 kcal Electronic energy + Delta-G solvation = -21205.117719 eV Core-core repulsion = 18087.056012 eV Total energy + Delta-G solvation = -3118.061707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.58808 -40.70651 -37.54909 -36.80349 -34.66186 -34.06124 -32.92715 -31.27124 -29.01219 -26.55713 -26.28855 -24.66776 -24.06732 -23.61658 -22.38769 -20.98743 -19.35585 -19.01854 -18.65672 -18.26684 -17.27704 -16.51091 -16.21140 -15.57271 -15.33414 -15.08280 -14.87676 -14.57332 -14.43446 -13.89215 -13.64675 -13.55925 -13.26864 -13.05452 -12.80970 -12.72051 -12.65040 -12.44177 -12.26073 -12.14032 -12.06195 -11.96657 -11.91825 -11.66330 -11.34984 -11.24339 -10.93403 -10.67956 -10.61589 -10.56099 -8.18488 -6.29323 0.11899 1.19102 1.45804 1.46855 1.59455 1.86053 2.42388 2.54314 2.73571 3.05892 3.17059 3.55102 3.73386 3.76784 3.90763 4.08128 4.12585 4.14252 4.21778 4.26949 4.34462 4.41562 4.54156 4.57915 4.75639 4.81034 4.88602 4.90847 4.92419 5.02542 5.06654 5.10948 5.12430 5.21518 5.24373 5.33283 5.34741 5.39440 5.39892 5.57022 5.79353 6.15633 6.84962 7.13207 7.40151 8.94356 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.038962 B = 0.003412 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.472966 B = 8204.049304 C = 8523.348595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.008 3.992 3 H 0.113 0.887 4 C 0.037 3.963 5 C -0.527 4.527 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.254 1.254 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.211 3.789 14 N -0.511 5.511 15 C 0.176 3.824 16 C 0.042 3.958 17 H 0.107 0.893 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.089 4.089 21 C -0.129 4.129 22 H 0.106 0.894 23 C -0.159 4.159 24 C -0.164 4.164 25 H 0.081 0.919 26 N -0.405 5.405 27 O 0.056 5.944 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.054 0.946 31 H -0.014 1.014 32 H 0.004 0.996 33 H 0.263 0.737 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.973 1.277 21.000 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.012 4.012 3 H 0.131 0.869 4 C -0.001 4.001 5 C -0.565 4.565 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.177 1.177 11 H -0.210 1.210 12 H -0.208 1.208 13 C -0.009 4.009 14 N -0.245 5.245 15 C -0.098 4.098 16 C 0.022 3.978 17 H 0.125 0.875 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.126 4.126 21 C -0.147 4.147 22 H 0.124 0.876 23 C -0.195 4.195 24 C -0.184 4.184 25 H 0.099 0.901 26 N -0.118 5.118 27 O 0.004 5.996 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.005 0.995 32 H 0.022 0.978 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.237 0.722 21.497 21.626 hybrid contribution -0.262 0.003 -1.542 1.564 sum 1.975 0.725 19.955 20.066 Atomic orbital electron populations 1.21731 0.90826 1.02771 1.03265 1.20149 0.98288 0.98301 0.84450 0.86941 1.19031 0.94504 0.95418 0.91146 1.21531 1.35162 1.09021 0.90804 0.90268 1.25971 0.94987 0.95965 1.02856 1.70129 1.39964 1.23016 1.24470 0.85364 0.77916 0.78991 0.78579 1.17700 1.21042 1.20771 1.29541 0.91935 0.81875 0.97512 1.71952 1.18341 1.30335 1.03872 1.26368 0.99034 0.84577 0.99785 1.19201 0.92596 1.02190 0.83786 0.87450 1.21635 0.95756 0.97930 0.99720 1.21583 0.98578 1.02292 0.92553 1.20926 0.92300 0.99215 1.00157 1.21994 0.99441 0.94311 0.98931 0.87635 1.23260 1.03920 0.94944 0.97426 1.21943 0.98102 1.09069 0.89246 0.90091 1.74528 1.14235 1.24581 0.98438 1.85264 1.54882 1.30221 1.29282 0.91363 0.89588 0.92678 0.99515 0.97772 0.92850 0.92227 0.92413 0.89774 0.90379 0.91522 0.89016 0.87129 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.98 71.98 0.65 -3.68 16 2 C 0.01 0.34 2.81 -11.54 -0.03 0.31 16 3 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 4 C 0.04 1.88 4.43 29.85 0.13 2.01 16 5 C -0.53 -27.83 8.41 25.60 0.22 -27.62 16 6 H 0.08 3.84 7.06 -2.91 -0.02 3.82 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.94 -55.87 13.29 21.45 0.28 -55.58 16 9 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 10 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 13 C 0.21 8.51 7.02 88.38 0.62 9.13 16 14 N -0.51 -19.91 11.55 -303.21 -3.50 -23.41 16 15 C 0.18 6.22 6.57 138.46 0.91 7.13 16 16 C 0.04 1.11 2.59 -11.68 -0.03 1.08 16 17 H 0.11 2.63 8.05 -2.39 -0.02 2.61 16 18 C -0.11 -2.62 5.18 30.65 0.16 -2.46 16 19 C -0.11 -1.76 5.69 30.65 0.17 -1.58 16 20 C -0.09 -1.26 5.94 30.26 0.18 -1.08 16 21 C -0.13 -2.17 6.01 -11.62 -0.07 -2.24 16 22 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 23 C -0.16 -2.51 9.66 30.58 0.30 -2.22 16 24 C -0.16 -3.72 5.61 -10.98 -0.06 -3.78 16 25 H 0.08 2.17 7.91 -2.39 -0.02 2.15 16 26 N -0.41 -15.73 12.16 -60.34 -0.73 -16.46 16 27 O 0.06 2.30 11.31 74.86 0.85 3.15 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 2.89 6.95 -2.39 -0.02 2.88 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.53 8.05 -2.39 -0.02 1.51 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.06 7.12 -2.39 -0.02 1.04 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 1.49 7.27 -2.39 -0.02 1.47 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -64.25 333.79 3.53 -60.72 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 1.01 Total: 11.63 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 3.60 Total: -24.54 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.95 Total: -95.46 kcal Atomic # 8 Polarization: 2.30 SS G_CDS: 0.85 Total: 3.15 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -64.25 3.53 -60.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691655453.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.104 kcal (2) G-P(sol) polarization free energy of solvation -64.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds