Wall clock time and date at job start Thu Apr 9 2020 14:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47415 * 2 1 4 4 C 1.50708 * 109.47156 * 239.99635 * 2 1 3 5 5 H 1.08000 * 119.99690 * 240.00756 * 4 2 1 6 6 C 1.37876 * 119.99803 * 59.99955 * 4 2 1 7 7 N 1.31515 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99747 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47169 * 90.00100 * 8 6 4 10 10 H 1.48505 * 109.46933 * 210.00132 * 8 6 4 11 11 H 1.48502 * 109.47120 * 329.99782 * 8 6 4 12 12 C 1.53004 * 109.46879 * 119.99998 * 2 1 3 13 13 C 1.50696 * 109.46842 * 294.99457 * 12 2 1 14 14 N 1.31133 * 126.54717 * 90.25946 * 13 12 2 15 15 C 1.34499 * 105.61342 * 180.12055 * 14 13 12 16 16 C 1.50701 * 126.28868 * 179.90160 * 15 14 13 17 17 H 1.09001 * 109.23239 * 0.22504 * 16 15 14 18 18 C 1.52869 * 109.26529 * 240.74119 * 16 15 14 19 19 C 1.53300 * 108.58784 * 184.84279 * 18 16 15 20 20 C 1.52882 * 108.58478 * 74.44090 * 19 18 16 21 21 C 1.52712 * 110.14963 * 305.48280 * 20 19 18 22 22 H 1.09003 * 114.90819 * 232.14780 * 21 20 19 23 23 C 1.53653 * 116.03348 * 90.19930 * 21 20 19 24 24 C 1.52065 * 120.52696 * 21.46438 * 21 20 19 25 25 H 1.08997 * 115.93356 * 210.73818 * 24 21 20 26 26 N 1.29949 * 107.42433 * 359.63805 * 15 14 13 27 27 O 1.21300 * 110.24997 * 0.22825 * 26 15 14 28 28 H 1.09001 * 109.47134 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46939 * 299.99971 * 1 2 3 30 30 H 1.09001 * 109.46760 * 60.00184 * 1 2 3 31 31 H 0.96994 * 120.00078 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46643 * 174.99914 * 12 2 1 33 33 H 1.08996 * 109.47393 * 54.99873 * 12 2 1 34 34 H 1.08995 * 109.62201 * 65.11687 * 18 16 15 35 35 H 1.09005 * 109.61751 * 304.56836 * 18 16 15 36 36 H 1.08999 * 109.62189 * 314.71754 * 19 18 16 37 37 H 1.08998 * 109.62058 * 194.16466 * 19 18 16 38 38 H 1.08994 * 109.36080 * 185.26826 * 20 19 18 39 39 H 1.09006 * 109.24638 * 65.61492 * 20 19 18 40 40 H 1.08995 * 117.53793 * 140.93418 * 23 21 20 41 41 H 1.08994 * 117.53661 * 355.68865 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0079 9 1 1.3428 -2.1620 -4.4118 10 1 2.4866 -0.1417 -5.1123 11 1 3.6294 -1.7586 -3.7121 12 6 2.0400 -0.7213 1.2493 13 6 1.6414 0.0571 2.4765 14 7 0.5367 -0.0874 3.1683 15 6 0.6129 0.8133 4.1643 16 6 -0.4192 1.0456 5.2375 17 1 -1.2532 0.3598 5.0882 18 6 -0.9269 2.4846 5.1459 19 6 -1.8833 2.7408 6.3163 20 6 -1.0593 2.8866 7.5958 21 6 -0.1600 1.6669 7.7842 22 1 -0.2380 1.1850 8.7588 23 6 1.2393 1.7573 7.1558 24 6 0.2059 0.7866 6.5994 25 1 0.3736 -0.2671 6.8222 26 7 1.7425 1.4424 4.0345 27 8 2.3484 1.0230 3.0710 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7096 1.1616 -3.4844 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 -1.4557 2.6269 4.2035 35 1 -0.0847 3.1742 5.2038 36 1 -2.5709 1.9012 6.4177 37 1 -2.4447 3.6576 6.1363 38 1 -1.7308 2.9758 8.4498 39 1 -0.4427 3.7828 7.5260 40 1 2.0727 1.3377 7.7191 41 1 1.4693 2.6427 6.5633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691656319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:07 Heat of formation + Delta-G solvation = 63.529620 kcal Electronic energy + Delta-G solvation = -21447.765469 eV Core-core repulsion = 18330.620641 eV Total energy + Delta-G solvation = -3117.144828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.02484 -39.83858 -35.82136 -35.09507 -33.26088 -32.71073 -31.18146 -30.06379 -26.57874 -25.50639 -25.15404 -23.32434 -22.71969 -22.05379 -20.86857 -19.64137 -18.33535 -17.53073 -16.82095 -16.51870 -16.28417 -14.77224 -14.65710 -14.35788 -14.21054 -13.94252 -13.53900 -13.21854 -12.86066 -12.54587 -12.42270 -12.06724 -11.77411 -11.60016 -11.27556 -11.18859 -11.17099 -10.98260 -10.84170 -10.65244 -10.48151 -10.44551 -10.17012 -10.07806 -9.91165 -9.89355 -9.82574 -9.06610 -8.92919 -8.40411 -6.05185 -4.13709 1.70902 2.72734 3.28503 3.35293 3.37206 3.41658 3.52673 4.08667 4.37779 4.41740 4.43876 4.70665 4.72179 4.84160 4.96955 5.07334 5.22424 5.26296 5.33135 5.39294 5.50258 5.67027 5.73536 5.76251 5.92698 5.94006 5.99531 6.03858 6.08923 6.14486 6.19283 6.23631 6.29533 6.53194 6.58488 6.92727 7.14431 7.26098 7.64247 7.85224 8.06220 8.30702 8.70878 8.88761 9.51852 11.00906 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.042370 B = 0.003559 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.680569 B = 7866.007780 C = 8189.648341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.050 3.950 3 H 0.031 0.969 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.027 4.027 13 C 0.214 3.786 14 N -0.493 5.493 15 C 0.170 3.830 16 C 0.041 3.959 17 H 0.102 0.898 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.090 4.090 21 C -0.143 4.143 22 H 0.103 0.897 23 C -0.169 4.169 24 C -0.136 4.136 25 H 0.100 0.900 26 N -0.392 5.392 27 O 0.064 5.936 28 H 0.029 0.971 29 H 0.010 0.990 30 H 0.082 0.918 31 H 0.261 0.739 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.037 2.021 18.035 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.066 4.066 13 C -0.005 4.005 14 N -0.226 5.226 15 C -0.103 4.103 16 C 0.021 3.979 17 H 0.120 0.880 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.128 4.128 21 C -0.161 4.161 22 H 0.121 0.879 23 C -0.206 4.206 24 C -0.155 4.155 25 H 0.118 0.882 26 N -0.103 5.103 27 O 0.008 5.992 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.229 2.585 18.537 18.993 hybrid contribution 0.414 -0.595 -1.067 1.290 sum -2.815 1.990 17.471 17.807 Atomic orbital electron populations 1.21816 0.97887 0.99479 1.00254 1.18723 0.93460 0.95909 0.88838 0.95080 1.21039 1.31816 1.12704 0.90028 0.92142 1.24950 0.94903 0.94910 0.99083 1.69898 1.36346 1.22710 1.23541 0.86541 0.79269 0.79354 0.82518 1.20636 1.21239 1.19781 1.20815 1.02218 0.97426 0.86109 1.29497 0.85879 0.88572 0.96515 1.71959 1.21061 1.23296 1.06332 1.25577 0.94730 0.92550 0.97453 1.18750 0.93075 0.98703 0.87365 0.88017 1.21679 0.99744 0.94769 0.99197 1.21564 0.97601 1.02075 0.94142 1.21081 0.97563 0.96229 0.97897 1.22242 0.97800 0.99383 0.96684 0.87926 1.23100 0.92034 1.02131 1.03316 1.21674 1.03672 0.97321 0.92858 0.88189 1.74487 1.09009 1.21956 1.04804 1.85272 1.42179 1.41680 1.30029 0.95181 0.97101 0.89954 0.92864 0.89257 0.88428 0.91075 0.91042 0.91315 0.91377 0.91492 0.91560 0.89155 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.78 37.16 0.33 -2.98 16 2 C 0.05 1.21 2.29 -91.76 -0.21 1.00 16 3 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.52 -13.47 8.56 -34.44 -0.29 -13.77 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 C -0.03 -0.52 5.26 -27.88 -0.15 -0.66 16 13 C 0.21 4.16 6.96 -13.06 -0.09 4.07 16 14 N -0.49 -9.50 10.89 -9.87 -0.11 -9.61 16 15 C 0.17 2.94 6.66 -156.37 -1.04 1.90 16 16 C 0.04 0.55 2.71 -92.31 -0.25 0.30 16 17 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.12 -1.40 4.95 -26.64 -0.13 -1.53 16 19 C -0.12 -1.08 5.93 -26.64 -0.16 -1.24 16 20 C -0.09 -0.78 5.83 -26.94 -0.16 -0.93 16 21 C -0.14 -1.36 6.19 -90.90 -0.56 -1.93 16 22 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 23 C -0.17 -1.90 9.31 -26.75 -0.25 -2.15 16 24 C -0.14 -1.60 5.28 -91.92 -0.49 -2.08 16 25 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 26 N -0.39 -7.13 11.86 30.90 0.37 -6.76 16 27 O 0.06 1.23 11.31 18.10 0.20 1.43 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.01 0.24 6.86 -51.93 -0.36 -0.12 16 30 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.93 7.11 -51.93 -0.37 0.56 16 36 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.10 1.25 7.26 -51.93 -0.38 0.88 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -28.24 329.27 -8.96 -37.20 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.45 Total: -0.13 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -3.55 Total: -18.41 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.89 Total: -40.63 kcal Atomic # 8 Polarization: 1.23 SS G_CDS: 0.20 Total: 1.43 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.24 -8.96 -37.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.727 kcal (2) G-P(sol) polarization free energy of solvation -28.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds