Wall clock time and date at job start Thu Apr 9 2020 14:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47415 * 2 1 4 4 C 1.50708 * 109.47156 * 239.99635 * 2 1 3 5 5 H 1.08000 * 119.99690 * 240.00756 * 4 2 1 6 6 C 1.37876 * 119.99803 * 59.99955 * 4 2 1 7 7 N 1.31515 * 120.00197 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99747 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47169 * 90.00100 * 8 6 4 10 10 H 1.48505 * 109.46933 * 210.00132 * 8 6 4 11 11 H 1.48502 * 109.47120 * 329.99782 * 8 6 4 12 12 C 1.53004 * 109.46879 * 119.99998 * 2 1 3 13 13 C 1.50696 * 109.46842 * 294.99457 * 12 2 1 14 14 N 1.31133 * 126.54717 * 90.25946 * 13 12 2 15 15 C 1.34499 * 105.61342 * 180.12055 * 14 13 12 16 16 C 1.50701 * 126.28868 * 179.90160 * 15 14 13 17 17 H 1.09001 * 109.23239 * 0.22504 * 16 15 14 18 18 C 1.52869 * 109.26529 * 240.74119 * 16 15 14 19 19 C 1.53300 * 108.58784 * 184.84279 * 18 16 15 20 20 C 1.52882 * 108.58478 * 74.44090 * 19 18 16 21 21 C 1.52712 * 110.14963 * 305.48280 * 20 19 18 22 22 H 1.09003 * 114.90819 * 232.14780 * 21 20 19 23 23 C 1.53653 * 116.03348 * 90.19930 * 21 20 19 24 24 C 1.52065 * 120.52696 * 21.46438 * 21 20 19 25 25 H 1.08997 * 115.93356 * 210.73818 * 24 21 20 26 26 N 1.29949 * 107.42433 * 359.63805 * 15 14 13 27 27 O 1.21300 * 110.24997 * 0.22825 * 26 15 14 28 28 H 1.09001 * 109.47134 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46939 * 299.99971 * 1 2 3 30 30 H 1.09001 * 109.46760 * 60.00184 * 1 2 3 31 31 H 0.96994 * 120.00078 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46643 * 174.99914 * 12 2 1 33 33 H 1.08996 * 109.47393 * 54.99873 * 12 2 1 34 34 H 1.08995 * 109.62201 * 65.11687 * 18 16 15 35 35 H 1.09005 * 109.61751 * 304.56836 * 18 16 15 36 36 H 1.08999 * 109.62189 * 314.71754 * 19 18 16 37 37 H 1.08998 * 109.62058 * 194.16466 * 19 18 16 38 38 H 1.08994 * 109.36080 * 185.26826 * 20 19 18 39 39 H 1.09006 * 109.24638 * 65.61492 * 20 19 18 40 40 H 1.08995 * 117.53793 * 140.93418 * 23 21 20 41 41 H 1.08994 * 117.53661 * 355.68865 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0079 9 1 1.3428 -2.1620 -4.4118 10 1 2.4866 -0.1417 -5.1123 11 1 3.6294 -1.7586 -3.7121 12 6 2.0400 -0.7213 1.2493 13 6 1.6414 0.0571 2.4765 14 7 0.5367 -0.0874 3.1683 15 6 0.6129 0.8133 4.1643 16 6 -0.4192 1.0456 5.2375 17 1 -1.2532 0.3598 5.0882 18 6 -0.9269 2.4846 5.1459 19 6 -1.8833 2.7408 6.3163 20 6 -1.0593 2.8866 7.5958 21 6 -0.1600 1.6669 7.7842 22 1 -0.2380 1.1850 8.7588 23 6 1.2393 1.7573 7.1558 24 6 0.2059 0.7866 6.5994 25 1 0.3736 -0.2671 6.8222 26 7 1.7425 1.4424 4.0345 27 8 2.3484 1.0230 3.0710 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7096 1.1616 -3.4844 32 1 3.1263 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2952 34 1 -1.4557 2.6269 4.2035 35 1 -0.0847 3.1742 5.2038 36 1 -2.5709 1.9012 6.4177 37 1 -2.4447 3.6576 6.1363 38 1 -1.7308 2.9758 8.4498 39 1 -0.4427 3.7828 7.5260 40 1 2.0727 1.3377 7.7191 41 1 1.4693 2.6427 6.5633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691656319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:06 Heat of formation + Delta-G solvation = 48.894506 kcal Electronic energy + Delta-G solvation = -21448.400096 eV Core-core repulsion = 18330.620641 eV Total energy + Delta-G solvation = -3117.779455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.49000 -40.73200 -37.52743 -36.61143 -34.52292 -33.99011 -32.71704 -31.37347 -28.30979 -27.23012 -26.44672 -24.67727 -23.69438 -23.35139 -22.09539 -21.16363 -19.35246 -19.01026 -18.38793 -18.13693 -17.38306 -16.57711 -15.94077 -15.82494 -15.14445 -14.96721 -14.88931 -14.49026 -14.38278 -13.93175 -13.60753 -13.40363 -13.24413 -12.95033 -12.88295 -12.76998 -12.50287 -12.27880 -12.17500 -12.03318 -12.00572 -11.88627 -11.74236 -11.66484 -11.28735 -10.93024 -10.91390 -10.72206 -10.60217 -10.44637 -8.08887 -6.23910 0.20954 1.29232 1.47647 1.48585 1.58454 1.93824 2.43753 2.49272 2.96806 3.15012 3.21003 3.56370 3.72246 3.81882 3.93393 4.05763 4.16492 4.24560 4.40932 4.43744 4.50127 4.55095 4.59548 4.63219 4.77295 4.85218 4.87678 4.98644 4.99806 5.04267 5.07967 5.13421 5.16068 5.24413 5.27362 5.30203 5.33875 5.45020 5.60535 5.84009 6.04010 6.28484 6.86888 7.22792 7.45533 8.96983 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.042370 B = 0.003559 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.680569 B = 7866.007780 C = 8189.648341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.049 3.951 3 H -0.001 1.001 4 C -0.529 4.529 5 H 0.072 0.928 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.261 1.261 12 C -0.015 4.015 13 C 0.209 3.791 14 N -0.507 5.507 15 C 0.174 3.826 16 C 0.039 3.961 17 H 0.106 0.894 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.091 4.091 21 C -0.117 4.117 22 H 0.125 0.875 23 C -0.179 4.179 24 C -0.150 4.150 25 H 0.101 0.899 26 N -0.399 5.399 27 O 0.052 5.948 28 H 0.033 0.967 29 H 0.014 0.986 30 H 0.053 0.947 31 H 0.260 0.740 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 1.235 19.574 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.030 3.970 3 H 0.017 0.983 4 C -0.567 4.567 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.185 1.185 12 C -0.054 4.054 13 C -0.011 4.011 14 N -0.241 5.241 15 C -0.099 4.099 16 C 0.019 3.981 17 H 0.124 0.876 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.129 4.129 21 C -0.135 4.135 22 H 0.142 0.858 23 C -0.216 4.216 24 C -0.170 4.170 25 H 0.119 0.881 26 N -0.112 5.112 27 O -0.001 6.001 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.493 1.791 20.079 20.459 hybrid contribution 0.479 -0.308 -1.506 1.610 sum -3.015 1.483 18.573 18.875 Atomic orbital electron populations 1.21631 0.98237 0.99207 0.98948 1.18605 0.93127 0.94578 0.90740 0.98292 1.21451 1.31579 1.12941 0.90766 0.91003 1.25786 0.95152 0.95591 1.02233 1.70047 1.37670 1.24247 1.24034 0.85517 0.79136 0.78094 0.78675 1.20229 1.21530 1.18536 1.20603 1.03412 0.97216 0.84178 1.29423 0.86176 0.88760 0.96718 1.71968 1.21027 1.24116 1.06988 1.26311 0.94954 0.91257 0.97405 1.18986 0.92245 0.99563 0.87268 0.87626 1.21668 0.99846 0.93585 1.00121 1.21557 0.97107 1.03080 0.93028 1.21148 0.97718 0.95635 0.98357 1.22389 0.96125 0.98657 0.96378 0.85755 1.23083 0.93285 1.01407 1.03838 1.21648 1.04836 0.97732 0.92735 0.88114 1.74491 1.09575 1.22298 1.04790 1.85258 1.42579 1.41772 1.30451 0.94754 0.96736 0.92798 0.93049 0.87309 0.87160 0.92433 0.92331 0.90462 0.90050 0.88998 0.91673 0.88597 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.78 71.98 0.63 -5.39 16 2 C 0.05 2.39 2.29 -11.53 -0.03 2.36 16 3 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 4 C -0.53 -27.41 8.56 25.60 0.22 -27.19 16 5 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -52.65 11.32 21.45 0.24 -52.41 16 8 Si 0.96 42.04 29.54 68.60 2.03 44.07 16 9 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 12 C -0.02 -0.59 5.26 29.85 0.16 -0.43 16 13 C 0.21 8.09 6.96 88.38 0.62 8.70 16 14 N -0.51 -19.47 10.89 -303.19 -3.30 -22.77 16 15 C 0.17 6.01 6.66 138.46 0.92 6.93 16 16 C 0.04 1.03 2.71 -11.89 -0.03 1.00 16 17 H 0.11 2.66 8.14 -2.39 -0.02 2.65 16 18 C -0.11 -2.69 4.95 30.65 0.15 -2.54 16 19 C -0.11 -1.80 5.93 30.66 0.18 -1.62 16 20 C -0.09 -1.30 5.83 30.46 0.18 -1.12 16 21 C -0.12 -1.92 6.19 -10.98 -0.07 -1.99 16 22 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 23 C -0.18 -3.82 9.31 30.58 0.28 -3.53 16 24 C -0.15 -3.32 5.28 -11.64 -0.06 -3.38 16 25 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 26 N -0.40 -14.64 11.86 -60.30 -0.72 -15.36 16 27 O 0.05 2.02 11.31 74.84 0.85 2.87 16 28 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.01 0.65 6.86 -2.39 -0.02 0.64 16 30 H 0.05 2.96 6.07 -2.39 -0.01 2.94 16 31 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.11 3.73 8.14 -2.38 -0.02 3.71 16 33 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.53 7.11 -2.38 -0.02 1.51 16 36 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.98 8.06 -2.38 -0.02 0.96 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.08 2.07 7.26 -2.39 -0.02 2.06 16 Total: -1.00 -60.70 329.27 3.71 -56.99 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 1.01 Total: 13.77 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 3.60 Total: -27.16 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -3.77 Total: -90.54 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -60.70 3.71 -56.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.887 kcal (2) G-P(sol) polarization free energy of solvation -60.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds