Wall clock time and date at job start Thu Apr 9 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 13 13 C 1.50697 * 109.47463 * 295.00146 * 12 2 1 14 14 N 1.31136 * 126.55103 * 89.99469 * 13 12 2 15 15 C 1.34499 * 105.61393 * 180.02562 * 14 13 12 16 16 C 1.50693 * 126.28595 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.35717 * 359.97438 * 16 15 14 18 18 C 1.52885 * 109.35764 * 240.27862 * 16 15 14 19 19 C 1.53270 * 108.59555 * 185.13887 * 18 16 15 20 20 C 1.52872 * 108.46718 * 74.63131 * 19 18 16 21 21 C 1.52068 * 110.51571 * 305.07829 * 20 19 18 22 22 H 1.09000 * 114.27034 * 166.23518 * 21 20 19 23 23 C 1.52309 * 119.83749 * 310.44797 * 21 20 19 24 24 C 1.52068 * 120.02133 * 21.69599 * 21 20 19 25 25 H 1.09001 * 116.53854 * 143.01124 * 24 21 20 26 26 N 1.29947 * 107.42358 * 0.02562 * 15 14 13 27 27 O 1.21299 * 110.25226 * 359.70180 * 26 15 14 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46906 * 55.00224 * 12 2 1 33 33 H 1.09006 * 109.47717 * 174.99599 * 12 2 1 34 34 H 1.09001 * 109.61490 * 304.99950 * 18 16 15 35 35 H 1.08996 * 109.61845 * 65.54341 * 18 16 15 36 36 H 1.09005 * 109.70916 * 314.92462 * 19 18 16 37 37 H 1.09002 * 109.80099 * 194.39656 * 19 18 16 38 38 H 1.09000 * 109.26908 * 184.80490 * 20 19 18 39 39 H 1.09002 * 109.26545 * 65.34596 * 20 19 18 40 40 H 1.09001 * 117.53851 * 2.43945 * 23 21 20 41 41 H 1.09000 * 117.59777 * 217.17629 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 6 2.0400 -0.7212 1.2491 13 6 1.6414 0.0569 2.4765 14 7 0.5347 -0.0845 3.1656 15 6 0.6128 0.8131 4.1642 16 6 -0.4198 1.0461 5.2368 17 1 -1.2590 0.3676 5.0838 18 6 -0.9154 2.4902 5.1579 19 6 -1.8661 2.7455 6.3327 20 6 -1.0344 2.8785 7.6085 21 6 -0.1494 1.6564 7.7976 22 1 0.6338 1.7817 8.5453 23 6 -0.7513 0.2612 7.6917 24 6 0.2033 0.7807 6.6055 25 1 1.2109 0.3651 6.5877 26 7 1.7418 1.4432 4.0337 27 8 2.3502 1.0199 3.0734 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7093 1.1619 -3.4844 32 1 1.6055 -1.7198 1.2950 33 1 3.1264 -0.7995 1.2055 34 1 -0.0669 3.1720 5.2164 35 1 -1.4476 2.6437 4.2192 36 1 -2.5591 1.9101 6.4331 37 1 -2.4247 3.6659 6.1624 38 1 -1.7021 2.9751 8.4647 39 1 -0.4088 3.7683 7.5389 40 1 -1.8090 0.1865 7.4393 41 1 -0.3742 -0.5042 8.3700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691656325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:09 Heat of formation + Delta-G solvation = 63.009126 kcal Electronic energy + Delta-G solvation = -21341.280749 eV Core-core repulsion = 18224.113350 eV Total energy + Delta-G solvation = -3117.167399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.05021 -39.83798 -35.84087 -35.16803 -33.32669 -32.68278 -31.18829 -30.07960 -26.59441 -25.56517 -25.17289 -23.04908 -22.88034 -22.18984 -20.87143 -19.59502 -18.48618 -17.55787 -17.03046 -16.30090 -16.25819 -14.69536 -14.61245 -14.34658 -14.32470 -13.96190 -13.69672 -13.19718 -12.84667 -12.53067 -12.42936 -12.19189 -11.70073 -11.60079 -11.32526 -11.25268 -11.17615 -11.05328 -10.93389 -10.63427 -10.53128 -10.44803 -10.17630 -10.12663 -9.91329 -9.84596 -9.79645 -9.07841 -8.92502 -8.40958 -6.05517 -4.13951 1.68550 2.70998 3.27417 3.35418 3.38168 3.44642 3.54453 3.86416 4.34536 4.39167 4.53898 4.62966 4.73994 4.82110 4.94694 5.02831 5.19763 5.26091 5.31070 5.39650 5.47345 5.58842 5.70105 5.79090 5.85657 5.91696 5.96253 6.05049 6.05856 6.10236 6.18173 6.24458 6.26955 6.51610 6.57714 6.92561 7.14132 7.25867 7.64182 7.84957 8.06074 8.30441 8.68819 8.88775 9.51694 11.00615 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041787 B = 0.003475 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.905045 B = 8055.655455 C = 8303.752654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.050 3.950 3 H 0.031 0.969 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.027 4.027 13 C 0.215 3.785 14 N -0.492 5.492 15 C 0.170 3.830 16 C 0.042 3.958 17 H 0.101 0.899 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.089 4.089 21 C -0.136 4.136 22 H 0.099 0.901 23 C -0.178 4.178 24 C -0.137 4.137 25 H 0.102 0.898 26 N -0.395 5.395 27 O 0.065 5.935 28 H 0.010 0.990 29 H 0.029 0.971 30 H 0.082 0.918 31 H 0.261 0.739 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.623 1.553 18.184 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.030 3.970 3 H 0.049 0.951 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.066 4.066 13 C -0.004 4.004 14 N -0.225 5.225 15 C -0.103 4.103 16 C 0.022 3.978 17 H 0.119 0.881 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.127 4.127 21 C -0.155 4.155 22 H 0.117 0.883 23 C -0.214 4.214 24 C -0.156 4.156 25 H 0.120 0.880 26 N -0.105 5.105 27 O 0.009 5.991 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.826 2.112 18.684 19.189 hybrid contribution 0.433 -0.536 -1.052 1.258 sum -3.393 1.576 17.632 18.024 Atomic orbital electron populations 1.21817 0.97874 0.99496 1.00263 1.18728 0.93479 0.95924 0.88848 0.95071 1.21073 1.31731 1.12707 0.90002 0.92079 1.24952 0.94892 0.94928 0.99102 1.69906 1.36362 1.22770 1.23444 0.86486 0.78632 0.79667 0.82909 1.19643 1.21015 1.21005 1.20824 1.02248 0.97439 0.86061 1.29530 0.85760 0.88651 0.96489 1.71965 1.21005 1.23309 1.06220 1.25579 0.94766 0.92449 0.97555 1.18946 0.93052 0.98594 0.87250 0.88117 1.21632 0.99819 0.94705 0.98940 1.21592 0.97636 1.02140 0.94334 1.20876 0.97588 0.96415 0.97785 1.21853 1.01779 0.92039 0.99786 0.88319 1.23156 0.99073 0.96922 1.02296 1.22087 0.99514 1.04904 0.89138 0.88018 1.74506 1.09192 1.21703 1.05145 1.85274 1.41917 1.41695 1.30194 0.97090 0.95162 0.89950 0.92915 0.88388 0.89220 0.90785 0.91205 0.91531 0.91185 0.91449 0.91319 0.88383 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.78 37.16 0.33 -2.99 16 2 C 0.05 1.20 2.29 -91.77 -0.21 0.98 16 3 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.52 -13.44 8.56 -34.44 -0.29 -13.74 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C -0.03 -0.52 5.25 -27.89 -0.15 -0.67 16 13 C 0.21 4.17 6.97 -13.05 -0.09 4.08 16 14 N -0.49 -9.51 10.88 -9.87 -0.11 -9.62 16 15 C 0.17 2.96 6.57 -156.37 -1.03 1.94 16 16 C 0.04 0.56 2.59 -91.98 -0.24 0.33 16 17 H 0.10 1.33 8.06 -51.93 -0.42 0.92 16 18 C -0.11 -1.38 5.17 -26.65 -0.14 -1.52 16 19 C -0.12 -1.11 5.71 -26.66 -0.15 -1.26 16 20 C -0.09 -0.77 5.92 -27.27 -0.16 -0.93 16 21 C -0.14 -1.32 6.00 -91.92 -0.55 -1.87 16 22 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.18 -1.67 9.66 -26.75 -0.26 -1.93 16 24 C -0.14 -1.63 5.60 -90.91 -0.51 -2.14 16 25 H 0.10 1.35 7.91 -51.93 -0.41 0.94 16 26 N -0.39 -7.31 12.16 30.90 0.38 -6.93 16 27 O 0.07 1.25 11.31 18.10 0.20 1.46 16 28 H 0.01 0.24 6.85 -51.93 -0.36 -0.12 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 33 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.58 7.11 -51.93 -0.37 0.21 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.86 7.26 -51.93 -0.38 0.48 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -28.39 329.68 -8.93 -37.32 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.43 Total: -0.40 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -3.55 Total: -18.11 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.90 Total: -40.79 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.20 Total: 1.46 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.39 -8.93 -37.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.327 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds