Wall clock time and date at job start Thu Apr 9 2020 14:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 13 13 C 1.50697 * 109.47463 * 295.00146 * 12 2 1 14 14 N 1.31136 * 126.55103 * 89.99469 * 13 12 2 15 15 C 1.34499 * 105.61393 * 180.02562 * 14 13 12 16 16 C 1.50693 * 126.28595 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.35717 * 359.97438 * 16 15 14 18 18 C 1.52885 * 109.35764 * 240.27862 * 16 15 14 19 19 C 1.53270 * 108.59555 * 185.13887 * 18 16 15 20 20 C 1.52872 * 108.46718 * 74.63131 * 19 18 16 21 21 C 1.52068 * 110.51571 * 305.07829 * 20 19 18 22 22 H 1.09000 * 114.27034 * 166.23518 * 21 20 19 23 23 C 1.52309 * 119.83749 * 310.44797 * 21 20 19 24 24 C 1.52068 * 120.02133 * 21.69599 * 21 20 19 25 25 H 1.09001 * 116.53854 * 143.01124 * 24 21 20 26 26 N 1.29947 * 107.42358 * 0.02562 * 15 14 13 27 27 O 1.21299 * 110.25226 * 359.70180 * 26 15 14 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46906 * 55.00224 * 12 2 1 33 33 H 1.09006 * 109.47717 * 174.99599 * 12 2 1 34 34 H 1.09001 * 109.61490 * 304.99950 * 18 16 15 35 35 H 1.08996 * 109.61845 * 65.54341 * 18 16 15 36 36 H 1.09005 * 109.70916 * 314.92462 * 19 18 16 37 37 H 1.09002 * 109.80099 * 194.39656 * 19 18 16 38 38 H 1.09000 * 109.26908 * 184.80490 * 20 19 18 39 39 H 1.09002 * 109.26545 * 65.34596 * 20 19 18 40 40 H 1.09001 * 117.53851 * 2.43945 * 23 21 20 41 41 H 1.09000 * 117.59777 * 217.17629 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 6 2.0400 -0.7212 1.2491 13 6 1.6414 0.0569 2.4765 14 7 0.5347 -0.0845 3.1656 15 6 0.6128 0.8131 4.1642 16 6 -0.4198 1.0461 5.2368 17 1 -1.2590 0.3676 5.0838 18 6 -0.9154 2.4902 5.1579 19 6 -1.8661 2.7455 6.3327 20 6 -1.0344 2.8785 7.6085 21 6 -0.1494 1.6564 7.7976 22 1 0.6338 1.7817 8.5453 23 6 -0.7513 0.2612 7.6917 24 6 0.2033 0.7807 6.6055 25 1 1.2109 0.3651 6.5877 26 7 1.7418 1.4432 4.0337 27 8 2.3502 1.0199 3.0734 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7093 1.1619 -3.4844 32 1 1.6055 -1.7198 1.2950 33 1 3.1264 -0.7995 1.2055 34 1 -0.0669 3.1720 5.2164 35 1 -1.4476 2.6437 4.2192 36 1 -2.5591 1.9101 6.4331 37 1 -2.4247 3.6659 6.1624 38 1 -1.7021 2.9751 8.4647 39 1 -0.4088 3.7683 7.5389 40 1 -1.8090 0.1865 7.4393 41 1 -0.3742 -0.5042 8.3700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691656325.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:08 Heat of formation + Delta-G solvation = 48.153578 kcal Electronic energy + Delta-G solvation = -21341.924934 eV Core-core repulsion = 18224.113350 eV Total energy + Delta-G solvation = -3117.811584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.52912 -40.70060 -37.54191 -36.68448 -34.61126 -33.94474 -32.72122 -31.38936 -28.32610 -27.23082 -26.50316 -24.47917 -23.80162 -23.39054 -22.14183 -21.14532 -19.37408 -19.07027 -18.48694 -18.20300 -17.26688 -16.57825 -15.95457 -15.55379 -15.30125 -14.93653 -14.88909 -14.65216 -14.39407 -13.93093 -13.58595 -13.42258 -13.24002 -13.05369 -12.86220 -12.65065 -12.48291 -12.35852 -12.18373 -12.06282 -11.99139 -11.95158 -11.77908 -11.73427 -11.34665 -10.93234 -10.88396 -10.65603 -10.57679 -10.45400 -8.09088 -6.24012 0.17710 1.26084 1.46338 1.48753 1.59767 1.91762 2.46195 2.61029 2.74581 3.11888 3.20945 3.58251 3.77606 3.77891 3.92498 4.12747 4.13904 4.23649 4.35136 4.38724 4.45789 4.52203 4.55404 4.70889 4.81567 4.85392 4.89253 4.93262 5.00137 5.04097 5.10882 5.13695 5.16138 5.22145 5.24936 5.32945 5.34203 5.39773 5.60645 5.83851 6.03912 6.28333 6.87001 7.19726 7.45481 8.97005 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.041787 B = 0.003475 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.905045 B = 8055.655455 C = 8303.752654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.049 3.951 3 H -0.001 1.001 4 C -0.528 4.528 5 H 0.072 0.928 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.015 4.015 13 C 0.209 3.791 14 N -0.505 5.505 15 C 0.174 3.826 16 C 0.042 3.958 17 H 0.104 0.896 18 C -0.111 4.111 19 C -0.113 4.113 20 C -0.089 4.089 21 C -0.128 4.128 22 H 0.106 0.894 23 C -0.160 4.160 24 C -0.163 4.163 25 H 0.082 0.918 26 N -0.405 5.405 27 O 0.054 5.946 28 H 0.014 0.986 29 H 0.034 0.966 30 H 0.053 0.947 31 H 0.260 0.740 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 0.756 19.672 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.029 3.971 3 H 0.017 0.983 4 C -0.566 4.566 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.054 4.054 13 C -0.010 4.010 14 N -0.239 5.239 15 C -0.099 4.099 16 C 0.022 3.978 17 H 0.122 0.878 18 C -0.149 4.149 19 C -0.151 4.151 20 C -0.126 4.126 21 C -0.146 4.146 22 H 0.125 0.875 23 C -0.197 4.197 24 C -0.182 4.182 25 H 0.100 0.900 26 N -0.118 5.118 27 O 0.001 5.999 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.235 1.305 20.176 20.656 hybrid contribution 0.550 -0.256 -1.468 1.589 sum -3.685 1.049 18.707 19.096 Atomic orbital electron populations 1.21632 0.98214 0.99246 0.98953 1.18611 0.93158 0.94596 0.90740 0.98280 1.21475 1.31475 1.12926 0.90728 0.90979 1.25786 0.95148 0.95614 1.02247 1.70052 1.37680 1.24295 1.23983 0.85462 0.78019 0.78783 0.79120 1.18271 1.21048 1.21057 1.20621 1.03481 0.97226 0.84091 1.29476 0.86029 0.88805 0.96678 1.71974 1.20996 1.24093 1.06864 1.26317 0.94964 0.91136 0.97498 1.19170 0.92124 0.99443 0.87097 0.87793 1.21622 0.99872 0.93471 0.99979 1.21585 0.97140 1.03227 0.93124 1.20917 0.97699 0.95786 0.98179 1.21982 1.01950 0.92608 0.98067 0.87544 1.23252 0.99026 0.97073 1.00371 1.21944 0.99299 1.07871 0.89080 0.89960 1.74499 1.09837 1.22216 1.05252 1.85257 1.42279 1.41799 1.30571 0.96738 0.94704 0.92789 0.93050 0.87086 0.87219 0.92251 0.92478 0.90542 0.89807 0.89135 0.91392 0.87315 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.78 71.98 0.63 -5.40 16 2 C 0.05 2.36 2.29 -11.54 -0.03 2.33 16 3 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 4 C -0.53 -27.31 8.56 25.60 0.22 -27.09 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -52.61 11.32 21.45 0.24 -52.37 16 8 Si 0.96 42.04 29.54 68.60 2.03 44.06 16 9 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 C -0.02 -0.59 5.25 29.84 0.16 -0.43 16 13 C 0.21 8.16 6.97 88.38 0.62 8.77 16 14 N -0.51 -19.55 10.88 -303.19 -3.30 -22.85 16 15 C 0.17 6.11 6.57 138.46 0.91 7.02 16 16 C 0.04 1.11 2.59 -11.68 -0.03 1.08 16 17 H 0.10 2.66 8.06 -2.39 -0.02 2.64 16 18 C -0.11 -2.65 5.17 30.65 0.16 -2.49 16 19 C -0.11 -1.84 5.71 30.64 0.17 -1.66 16 20 C -0.09 -1.28 5.92 30.24 0.18 -1.10 16 21 C -0.13 -2.17 6.00 -11.64 -0.07 -2.24 16 22 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 23 C -0.16 -2.61 9.66 30.58 0.30 -2.31 16 24 C -0.16 -3.70 5.60 -10.98 -0.06 -3.76 16 25 H 0.08 2.18 7.91 -2.39 -0.02 2.16 16 26 N -0.41 -15.23 12.16 -60.31 -0.73 -15.97 16 27 O 0.05 2.11 11.31 74.83 0.85 2.95 16 28 H 0.01 0.65 6.85 -2.39 -0.02 0.64 16 29 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 2.96 6.07 -2.38 -0.01 2.95 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 33 H 0.11 3.75 8.14 -2.38 -0.02 3.73 16 34 H 0.06 1.58 8.04 -2.39 -0.02 1.56 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.11 7.11 -2.38 -0.02 1.09 16 37 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 1.55 7.26 -2.39 -0.02 1.54 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -61.17 329.68 3.70 -57.47 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 1.01 Total: 12.97 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 3.60 Total: -26.27 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -3.79 Total: -91.18 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.85 Total: 2.95 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -61.17 3.70 -57.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691656325.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.626 kcal (2) G-P(sol) polarization free energy of solvation -61.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds