Wall clock time and date at job start Thu Apr 9 2020 14:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.45380 * 2 1 4 4 C 1.53036 * 109.46020 * 119.97843 * 2 1 3 5 5 C 1.53119 * 109.27500 * 179.19123 * 4 2 1 6 6 H 1.08998 * 109.57541 * 62.28444 * 5 4 2 7 7 N 1.46497 * 109.52273 * 182.43846 * 5 4 2 8 8 C 1.39777 * 120.00309 * 204.68517 * 7 5 4 9 9 C 1.38950 * 120.00662 * 359.72251 * 8 7 5 10 10 C 1.38007 * 119.99581 * 179.76582 * 9 8 7 11 11 C 1.38906 * 120.00728 * 0.51363 * 10 9 8 12 12 O 1.35795 * 119.99699 * 179.76486 * 11 10 9 13 13 C 1.34804 * 117.00210 * 174.43589 * 12 11 10 14 14 H 1.08002 * 120.00160 * 5.05897 * 13 12 11 15 15 C 1.38626 * 120.00468 * 185.05411 * 13 12 11 16 16 N 1.31577 * 119.99382 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00203 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47057 * 90.00540 * 17 15 13 19 19 H 1.48503 * 109.46860 * 210.00397 * 17 15 13 20 20 H 1.48504 * 109.47002 * 330.00279 * 17 15 13 21 21 C 1.38898 * 120.01048 * 359.74387 * 11 10 9 22 22 C 1.38012 * 120.00421 * 359.97438 * 21 11 10 23 23 C 1.53116 * 109.16558 * 302.34472 * 5 4 2 24 24 C 1.53039 * 109.27607 * 57.65428 * 23 5 4 25 25 N 1.46846 * 109.46047 * 240.03106 * 2 1 3 26 26 H 1.08995 * 109.47281 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46747 * 299.97228 * 1 2 3 28 28 H 1.09001 * 109.47076 * 59.96846 * 1 2 3 29 29 H 1.09004 * 109.50454 * 59.25427 * 4 2 1 30 30 H 1.08992 * 109.50441 * 299.13212 * 4 2 1 31 31 H 0.97003 * 120.00189 * 24.40878 * 7 5 4 32 32 H 1.07996 * 120.00371 * 0.02562 * 9 8 7 33 33 H 1.08004 * 120.00010 * 180.23067 * 10 9 8 34 34 H 0.97004 * 119.99452 * 179.97438 * 16 15 13 35 35 H 1.07999 * 119.99983 * 180.02562 * 21 11 10 36 36 H 1.08001 * 120.00360 * 180.02562 * 22 21 11 37 37 H 1.08993 * 109.50704 * 177.59425 * 23 5 4 38 38 H 1.09001 * 109.50194 * 297.67840 * 23 5 4 39 39 H 1.08998 * 109.46231 * 60.84029 * 24 23 5 40 40 H 1.09000 * 109.46478 * 180.80661 * 24 23 5 41 41 H 1.00900 * 111.00402 * 54.14441 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5709 -0.7362 1.2355 6 1 3.9466 0.2865 1.2677 7 7 4.0642 -1.4758 2.3999 8 6 5.3418 -1.2154 2.9034 9 6 6.1465 -0.2592 2.2962 10 6 7.4060 0.0012 2.7964 11 6 7.8736 -0.7002 3.9005 12 8 9.1149 -0.4472 4.3897 13 6 9.4638 -1.0773 5.5292 14 1 8.8008 -1.8094 5.9663 15 6 10.6736 -0.7859 6.1400 16 7 11.4811 0.1062 5.6077 17 14 11.1568 -1.6586 7.7194 18 1 11.9051 -2.8984 7.3908 19 1 12.0155 -0.7639 8.5364 20 1 9.9338 -2.0070 8.4864 21 6 7.0716 -1.6600 4.5045 22 6 5.8096 -1.9166 4.0081 23 6 4.0548 -1.4189 -0.0468 24 6 3.4864 -0.6777 -1.2592 25 7 2.0193 -0.6916 -1.1994 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 1.6658 -1.7448 1.2575 30 1 1.6895 -0.1984 2.1398 31 1 3.5026 -2.1435 2.8239 32 1 5.7846 0.2833 1.4353 33 1 8.0301 0.7471 2.3268 34 1 12.3276 0.3105 6.0353 35 1 7.4351 -2.2049 5.3631 36 1 5.1859 -2.6626 4.4780 37 1 5.1438 -1.3948 -0.0833 38 1 3.7130 -2.4539 -0.0593 39 1 3.8404 0.3532 -1.2532 40 1 3.8174 -1.1698 -2.1737 41 1 1.6195 -0.2924 -2.0355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692183783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:10 Heat of formation + Delta-G solvation = -3.327051 kcal Electronic energy + Delta-G solvation = -20868.297887 eV Core-core repulsion = 17748.253936 eV Total energy + Delta-G solvation = -3120.043951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.56550 -38.65661 -36.81836 -34.43632 -32.48765 -32.09916 -30.68152 -29.97392 -27.46144 -26.67533 -25.09041 -23.40612 -22.05445 -21.70675 -20.44262 -19.87973 -17.78652 -17.06127 -16.64750 -16.22643 -15.36320 -15.26446 -14.44415 -14.27279 -14.11565 -13.94530 -13.69467 -13.40841 -13.22116 -12.68329 -12.50431 -12.40835 -12.25180 -12.05243 -11.78834 -11.66321 -11.47514 -11.22175 -11.09563 -11.00515 -10.67011 -10.55320 -10.49596 -10.32141 -9.20737 -9.13936 -8.70758 -8.41811 -8.14460 -6.36658 -6.30351 -3.87599 2.22726 2.60226 3.19707 3.20467 3.25039 3.78035 3.89831 4.07702 4.57095 4.67267 4.73303 4.83414 5.02135 5.10021 5.21724 5.26800 5.29567 5.35487 5.46104 5.49509 5.58614 5.62322 5.69811 5.79474 5.80273 5.84908 5.97378 6.06094 6.21613 6.25050 6.33883 6.57936 6.80463 6.89061 6.94645 7.11697 7.16711 7.34726 7.48071 7.67460 8.02281 8.14096 8.29114 9.15536 9.90503 10.88344 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.047217 B = 0.003080 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.861337 B = 9088.098190 C = 9380.258268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.039 0.961 4 C -0.117 4.117 5 C 0.160 3.840 6 H 0.069 0.931 7 N -0.754 5.754 8 C 0.126 3.874 9 C -0.147 4.147 10 C -0.150 4.150 11 C 0.113 3.887 12 O -0.189 6.189 13 C -0.386 4.386 14 H 0.088 0.912 15 C 0.036 3.964 16 N -0.870 5.870 17 Si 0.937 3.063 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.269 1.269 21 C -0.189 4.189 22 C -0.143 4.143 23 C -0.134 4.134 24 C 0.060 3.940 25 N -0.687 5.687 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.390 0.610 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.267 0.733 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.181 -1.292 -10.582 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 H 0.057 0.943 4 C -0.156 4.156 5 C 0.054 3.946 6 H 0.087 0.913 7 N -0.388 5.388 8 C 0.028 3.972 9 C -0.169 4.169 10 C -0.170 4.170 11 C 0.060 3.940 12 O -0.094 6.094 13 C -0.463 4.463 14 H 0.105 0.895 15 C -0.167 4.167 16 N -0.506 5.506 17 Si 0.763 3.237 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.194 1.194 21 C -0.209 4.209 22 C -0.165 4.165 23 C -0.173 4.173 24 C -0.070 4.070 25 N -0.319 5.319 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.223 0.777 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.778 -1.537 -10.434 21.537 hybrid contribution 0.213 0.166 0.717 0.766 sum -18.566 -1.371 -9.717 21.000 Atomic orbital electron populations 1.21817 0.94230 1.02603 1.01666 1.21412 0.95144 0.95210 0.90621 0.94335 1.21881 0.95004 1.01759 0.96940 1.20697 0.92752 0.95630 0.85540 0.91259 1.44263 1.15108 1.45829 1.33622 1.17402 0.86069 0.98128 0.95564 1.20185 0.94440 1.00618 1.01669 1.20025 0.96100 1.02648 0.98263 1.19232 0.86536 0.94218 0.93973 1.83982 1.24381 1.62430 1.38627 1.21231 1.04083 1.21139 0.99850 0.89480 1.25212 0.95387 0.96978 0.99137 1.70051 1.10226 1.31152 1.39218 0.85769 0.78856 0.78731 0.80375 1.20071 1.20420 1.19369 1.20990 0.94810 1.01877 1.03253 1.20237 0.96660 1.01988 0.97626 1.22130 1.00863 1.00495 0.93824 1.21903 0.87226 0.98769 0.99106 1.60349 1.07518 1.59406 1.04620 0.91727 0.92040 0.92781 0.90860 0.91178 0.77690 0.87237 0.86610 0.92331 0.85542 0.87662 0.90965 0.91140 0.95150 0.90690 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.43 37.16 0.35 -0.65 16 2 C 0.09 0.73 3.04 -67.72 -0.21 0.52 16 3 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 4 C -0.12 -1.13 4.84 -26.65 -0.13 -1.25 16 5 C 0.16 1.87 2.21 -67.81 -0.15 1.72 16 6 H 0.07 0.89 6.50 -51.93 -0.34 0.55 16 7 N -0.75 -10.28 5.26 -52.00 -0.27 -10.55 16 8 C 0.13 2.20 6.64 -83.71 -0.56 1.65 16 9 C -0.15 -2.70 8.85 -39.40 -0.35 -3.05 16 10 C -0.15 -3.26 9.98 -39.42 -0.39 -3.66 16 11 C 0.11 2.80 6.65 -39.09 -0.26 2.54 16 12 O -0.19 -5.55 9.76 -0.02 0.00 -5.55 16 13 C -0.39 -11.10 9.48 30.88 0.29 -10.81 16 14 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 15 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 16 N -0.87 -26.25 13.67 55.48 0.76 -25.49 16 17 Si 0.94 21.12 29.55 -169.99 -5.02 16.09 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 C -0.19 -4.22 9.16 -39.42 -0.36 -4.58 16 22 C -0.14 -2.68 9.89 -39.40 -0.39 -3.07 16 23 C -0.13 -1.51 5.61 -26.65 -0.15 -1.66 16 24 C 0.06 0.55 6.55 -3.83 -0.03 0.53 16 25 N -0.69 -5.85 6.50 -106.76 -0.69 -6.54 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.39 4.74 8.61 -40.82 -0.35 4.39 16 32 H 0.11 1.75 6.05 -52.49 -0.32 1.43 16 33 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.07 0.92 7.65 -51.93 -0.40 0.52 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.34 2.33 8.79 -39.29 -0.35 1.99 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -31.32 330.04 -8.78 -40.10 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.10 Total: 7.82 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -2.42 Total: -20.85 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.21 Total: -42.59 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: 0.00 Total: -5.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.32 -8.78 -40.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692183783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.776 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds