Wall clock time and date at job start Thu Apr 9 2020 14:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.45380 * 2 1 4 4 C 1.53036 * 109.46020 * 119.97843 * 2 1 3 5 5 C 1.53119 * 109.27500 * 179.19123 * 4 2 1 6 6 H 1.08998 * 109.57541 * 62.28444 * 5 4 2 7 7 N 1.46497 * 109.52273 * 182.43846 * 5 4 2 8 8 C 1.39777 * 120.00309 * 204.68517 * 7 5 4 9 9 C 1.38950 * 120.00662 * 359.72251 * 8 7 5 10 10 C 1.38007 * 119.99581 * 179.76582 * 9 8 7 11 11 C 1.38906 * 120.00728 * 0.51363 * 10 9 8 12 12 O 1.35795 * 119.99699 * 179.76486 * 11 10 9 13 13 C 1.34804 * 117.00210 * 174.43589 * 12 11 10 14 14 H 1.08002 * 120.00160 * 5.05897 * 13 12 11 15 15 C 1.38626 * 120.00468 * 185.05411 * 13 12 11 16 16 N 1.31577 * 119.99382 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00203 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47057 * 90.00540 * 17 15 13 19 19 H 1.48503 * 109.46860 * 210.00397 * 17 15 13 20 20 H 1.48504 * 109.47002 * 330.00279 * 17 15 13 21 21 C 1.38898 * 120.01048 * 359.74387 * 11 10 9 22 22 C 1.38012 * 120.00421 * 359.97438 * 21 11 10 23 23 C 1.53116 * 109.16558 * 302.34472 * 5 4 2 24 24 C 1.53039 * 109.27607 * 57.65428 * 23 5 4 25 25 N 1.46846 * 109.46047 * 240.03106 * 2 1 3 26 26 H 1.08995 * 109.47281 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46747 * 299.97228 * 1 2 3 28 28 H 1.09001 * 109.47076 * 59.96846 * 1 2 3 29 29 H 1.09004 * 109.50454 * 59.25427 * 4 2 1 30 30 H 1.08992 * 109.50441 * 299.13212 * 4 2 1 31 31 H 0.97003 * 120.00189 * 24.40878 * 7 5 4 32 32 H 1.07996 * 120.00371 * 0.02562 * 9 8 7 33 33 H 1.08004 * 120.00010 * 180.23067 * 10 9 8 34 34 H 0.97004 * 119.99452 * 179.97438 * 16 15 13 35 35 H 1.07999 * 119.99983 * 180.02562 * 21 11 10 36 36 H 1.08001 * 120.00360 * 180.02562 * 22 21 11 37 37 H 1.08993 * 109.50704 * 177.59425 * 23 5 4 38 38 H 1.09001 * 109.50194 * 297.67840 * 23 5 4 39 39 H 1.08998 * 109.46231 * 60.84029 * 24 23 5 40 40 H 1.09000 * 109.46478 * 180.80661 * 24 23 5 41 41 H 1.00900 * 111.00402 * 54.14441 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5709 -0.7362 1.2355 6 1 3.9466 0.2865 1.2677 7 7 4.0642 -1.4758 2.3999 8 6 5.3418 -1.2154 2.9034 9 6 6.1465 -0.2592 2.2962 10 6 7.4060 0.0012 2.7964 11 6 7.8736 -0.7002 3.9005 12 8 9.1149 -0.4472 4.3897 13 6 9.4638 -1.0773 5.5292 14 1 8.8008 -1.8094 5.9663 15 6 10.6736 -0.7859 6.1400 16 7 11.4811 0.1062 5.6077 17 14 11.1568 -1.6586 7.7194 18 1 11.9051 -2.8984 7.3908 19 1 12.0155 -0.7639 8.5364 20 1 9.9338 -2.0070 8.4864 21 6 7.0716 -1.6600 4.5045 22 6 5.8096 -1.9166 4.0081 23 6 4.0548 -1.4189 -0.0468 24 6 3.4864 -0.6777 -1.2592 25 7 2.0193 -0.6916 -1.1994 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 1.6658 -1.7448 1.2575 30 1 1.6895 -0.1984 2.1398 31 1 3.5026 -2.1435 2.8239 32 1 5.7846 0.2833 1.4353 33 1 8.0301 0.7471 2.3268 34 1 12.3276 0.3105 6.0353 35 1 7.4351 -2.2049 5.3631 36 1 5.1859 -2.6626 4.4780 37 1 5.1438 -1.3948 -0.0833 38 1 3.7130 -2.4539 -0.0593 39 1 3.8404 0.3532 -1.2532 40 1 3.8174 -1.1698 -2.1737 41 1 1.6195 -0.2924 -2.0355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692183783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:10 Heat of formation + Delta-G solvation = -24.954833 kcal Electronic energy + Delta-G solvation = -20869.235738 eV Core-core repulsion = 17748.253936 eV Total energy + Delta-G solvation = -3120.981802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88086 -39.99101 -38.38381 -35.73282 -34.12511 -33.20544 -32.03817 -31.43416 -28.65779 -27.77125 -26.98891 -24.53147 -23.34837 -22.90006 -21.83910 -20.77328 -19.63519 -18.84998 -17.77737 -17.33242 -16.72960 -16.19213 -15.99270 -15.60253 -15.47149 -15.38029 -14.96791 -14.67995 -14.36080 -14.28394 -14.07166 -13.44877 -13.40255 -13.19720 -13.07815 -12.82843 -12.73074 -12.68428 -12.34729 -12.12197 -11.97698 -11.92092 -11.67283 -11.41069 -11.08709 -10.87399 -10.16324 -9.78020 -9.37976 -8.39357 -7.93258 -6.02960 0.57973 0.93171 1.36666 1.46528 1.54186 2.22766 2.60595 2.91225 3.23535 3.25204 3.66517 3.78451 3.94905 4.01578 4.13619 4.15689 4.23451 4.40513 4.45684 4.53101 4.57903 4.58727 4.70443 4.83422 4.89439 4.93327 4.96926 5.05501 5.12441 5.14827 5.21942 5.26134 5.32923 5.41843 5.50144 5.55435 5.78403 5.99248 6.10841 6.11462 6.52910 6.62344 7.04238 7.07350 7.93524 8.85316 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.047217 B = 0.003080 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.861337 B = 9088.098190 C = 9380.258268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.037 0.963 4 C -0.111 4.111 5 C 0.156 3.844 6 H 0.063 0.937 7 N -0.740 5.740 8 C 0.155 3.845 9 C -0.145 4.145 10 C -0.156 4.156 11 C 0.062 3.938 12 O -0.243 6.243 13 C -0.406 4.406 14 H 0.098 0.902 15 C -0.029 4.029 16 N -0.928 5.928 17 Si 1.017 2.983 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.254 1.254 21 C -0.193 4.193 22 C -0.146 4.146 23 C -0.130 4.130 24 C 0.063 3.937 25 N -0.689 5.689 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.402 0.598 32 H 0.138 0.862 33 H 0.112 0.888 34 H 0.270 0.730 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.031 0.969 40 H 0.084 0.916 41 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.378 -2.333 -11.011 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 H 0.055 0.945 4 C -0.149 4.149 5 C 0.050 3.950 6 H 0.081 0.919 7 N -0.373 5.373 8 C 0.054 3.946 9 C -0.168 4.168 10 C -0.175 4.175 11 C 0.013 3.987 12 O -0.151 6.151 13 C -0.483 4.483 14 H 0.116 0.884 15 C -0.225 4.225 16 N -0.567 5.567 17 Si 0.837 3.163 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.177 1.177 21 C -0.212 4.212 22 C -0.168 4.168 23 C -0.169 4.169 24 C -0.067 4.067 25 N -0.323 5.323 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.238 0.762 32 H 0.155 0.845 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.102 0.898 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.078 -2.597 -10.914 24.765 hybrid contribution 0.865 0.479 0.609 1.161 sum -21.214 -2.119 -10.305 23.679 Atomic orbital electron populations 1.21773 0.92833 1.02680 1.02538 1.21431 0.96212 0.94797 0.89975 0.94521 1.21833 0.92937 1.02200 0.97940 1.20887 0.94419 0.94900 0.84762 0.91921 1.44379 1.13504 1.45684 1.33757 1.17524 0.87053 0.95969 0.94052 1.20405 0.93142 1.00923 1.02289 1.20222 0.97392 1.02348 0.97577 1.19717 0.86383 0.96702 0.95913 1.83930 1.27041 1.64396 1.39711 1.21757 1.04772 1.21502 1.00229 0.88447 1.26535 0.95006 0.97847 1.03104 1.70208 1.11090 1.33793 1.41646 0.84610 0.78939 0.77535 0.75257 1.18928 1.19748 1.17717 1.21057 0.95945 1.01203 1.03023 1.20502 0.95641 1.02707 0.97956 1.22048 0.99895 1.00475 0.94487 1.21838 0.87810 0.98596 0.98441 1.60329 1.06926 1.59698 1.05300 0.91999 0.91450 0.91734 0.90652 0.90686 0.76245 0.84482 0.87014 0.92151 0.86312 0.84296 0.92581 0.91588 0.95032 0.89786 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.43 71.98 0.68 -0.79 16 2 C 0.09 1.18 3.04 44.94 0.14 1.31 16 3 H 0.04 0.53 8.14 -2.39 -0.02 0.52 16 4 C -0.11 -1.75 4.84 30.65 0.15 -1.61 16 5 C 0.16 3.17 2.21 45.07 0.10 3.27 16 6 H 0.06 1.41 6.50 -2.39 -0.02 1.40 16 7 N -0.74 -17.71 5.26 -318.43 -1.68 -19.38 16 8 C 0.15 5.04 6.64 38.22 0.25 5.29 16 9 C -0.15 -5.15 8.85 22.39 0.20 -4.95 16 10 C -0.16 -6.91 9.98 22.37 0.22 -6.69 16 11 C 0.06 3.22 6.65 22.59 0.15 3.38 16 12 O -0.24 -15.15 9.76 -22.98 -0.22 -15.37 16 13 C -0.41 -24.44 9.48 67.91 0.64 -23.79 16 14 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 15 C -0.03 -1.69 5.49 84.82 0.47 -1.23 16 16 N -0.93 -58.79 13.67 21.61 0.30 -58.49 16 17 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 21 C -0.19 -8.67 9.16 22.37 0.20 -8.46 16 22 C -0.15 -5.19 9.89 22.39 0.22 -4.97 16 23 C -0.13 -2.60 5.61 30.65 0.17 -2.43 16 24 C 0.06 1.00 6.55 86.33 0.57 1.57 16 25 N -0.69 -9.62 6.50 -491.68 -3.20 -12.82 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.40 8.16 8.61 -92.71 -0.80 7.36 16 32 H 0.14 4.07 6.05 -2.91 -0.02 4.06 16 33 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 34 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.12 5.42 5.63 -2.91 -0.02 5.40 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.06 1.31 7.65 -2.39 -0.02 1.29 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.35 3.72 8.79 -89.69 -0.79 2.93 16 Total: -1.00 -71.93 330.04 0.85 -71.09 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.54 Total: 28.79 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 4.16 Total: -40.10 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -4.58 Total: -90.70 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.22 Total: -15.37 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.93 0.85 -71.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692183783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.131 kcal (2) G-P(sol) polarization free energy of solvation -71.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds