Wall clock time and date at job start Thu Apr 9 2020 14:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.45835 * 2 1 4 4 C 1.53046 * 109.45593 * 240.09606 * 2 1 3 5 5 C 1.53118 * 109.27355 * 180.87231 * 4 2 1 6 6 H 1.08990 * 109.52383 * 297.62005 * 5 4 2 7 7 N 1.46504 * 109.52095 * 177.49017 * 5 4 2 8 8 C 1.39781 * 120.00018 * 155.12837 * 7 5 4 9 9 C 1.38944 * 120.00797 * 180.02562 * 8 7 5 10 10 C 1.38008 * 119.99837 * 180.02562 * 9 8 7 11 11 C 1.38904 * 120.00052 * 0.02566 * 10 9 8 12 12 O 1.35799 * 119.99221 * 179.97438 * 11 10 9 13 13 C 1.34816 * 116.99847 * 5.54144 * 12 11 10 14 14 H 1.07999 * 120.00151 * 354.94468 * 13 12 11 15 15 C 1.38624 * 119.99700 * 174.93939 * 13 12 11 16 16 N 1.31577 * 120.00117 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99565 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46831 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.47388 * 300.00072 * 17 15 13 20 20 H 1.48493 * 109.47174 * 60.00497 * 17 15 13 21 21 C 1.38891 * 120.01480 * 0.22999 * 11 10 9 22 22 C 1.38010 * 120.00683 * 359.48725 * 21 11 10 23 23 C 1.53117 * 109.21107 * 57.55788 * 5 4 2 24 24 C 1.53039 * 109.27826 * 302.37287 * 23 5 4 25 25 N 1.46843 * 109.52378 * 59.18576 * 24 23 5 26 26 H 1.08994 * 109.47246 * 300.01842 * 1 2 3 27 27 H 1.09005 * 109.46833 * 60.02233 * 1 2 3 28 28 H 1.09005 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.55957 * 60.89400 * 4 2 1 30 30 H 1.09006 * 109.44701 * 300.77961 * 4 2 1 31 31 H 0.96997 * 119.99734 * 335.12649 * 7 5 4 32 32 H 1.08006 * 120.00324 * 0.02562 * 9 8 7 33 33 H 1.07998 * 120.00424 * 180.02562 * 10 9 8 34 34 H 0.96998 * 119.99784 * 359.97438 * 16 15 13 35 35 H 1.07998 * 120.00215 * 179.74639 * 21 11 10 36 36 H 1.08000 * 120.00977 * 180.27752 * 22 21 11 37 37 H 1.08999 * 109.51040 * 62.31865 * 23 5 4 38 38 H 1.09001 * 109.50104 * 182.39685 * 23 5 4 39 39 H 1.09004 * 109.45844 * 179.20180 * 24 23 5 40 40 H 1.09004 * 109.46012 * 299.17523 * 24 23 5 41 41 H 1.00893 * 111.00128 * 174.16586 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7194 -1.2509 5 6 3.5708 -0.7361 -1.2358 6 1 3.9465 0.2865 -1.2679 7 7 4.0639 -1.4757 -2.4004 8 6 5.3405 -1.2135 -2.9056 9 6 5.8081 -1.9145 -4.0104 10 6 7.0688 -1.6559 -4.5087 11 6 7.8704 -0.6952 -3.9055 12 8 9.1111 -0.4412 -4.3957 13 6 9.4598 -1.0714 -5.5353 14 1 8.7971 -1.8041 -5.9717 15 6 10.6688 -0.7788 -6.1471 16 7 11.4763 0.1136 -5.6152 17 14 11.1522 -1.6525 -7.7258 18 1 12.4814 -1.1652 -8.1742 19 1 11.2186 -3.1158 -7.4815 20 1 10.1412 -1.3715 -8.7766 21 6 7.4054 0.0020 -2.7979 22 6 6.1425 -0.2522 -2.3027 23 6 4.0546 -1.4190 0.0464 24 6 3.4864 -0.6779 1.2589 25 7 2.0193 -0.6918 1.1993 26 1 -0.3633 0.5141 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3634 -1.0277 0.0005 29 1 1.6903 -0.1961 -2.1408 30 1 1.6647 -1.7429 -1.2592 31 1 3.5044 -2.1474 -2.8207 32 1 5.1850 -2.6618 -4.4792 33 1 7.4322 -2.2004 -5.3677 34 1 11.2254 0.5670 -4.7953 35 1 8.0304 0.7460 -2.3265 36 1 5.7791 0.2931 -1.4442 37 1 3.7122 -2.4538 0.0592 38 1 5.1437 -1.3957 0.0825 39 1 3.8175 -1.1702 2.1733 40 1 3.8403 0.3531 1.2529 41 1 1.6197 -0.2926 2.0353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692183784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:12 Heat of formation + Delta-G solvation = -9.668626 kcal Electronic energy + Delta-G solvation = -20902.169314 eV Core-core repulsion = 17781.850371 eV Total energy + Delta-G solvation = -3120.318943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.61831 -38.74451 -36.93618 -34.52628 -32.52275 -32.08823 -30.70680 -30.04681 -27.48036 -26.65395 -24.77100 -23.40270 -22.07014 -21.76653 -20.54456 -19.91724 -18.17776 -17.06983 -16.68999 -16.21193 -15.44338 -15.30105 -14.46982 -14.38516 -14.15930 -13.85602 -13.72148 -13.53539 -13.38724 -12.89771 -12.54319 -12.47942 -12.30282 -12.09560 -11.84150 -11.76591 -11.29218 -11.25050 -10.93310 -10.76282 -10.68523 -10.57192 -10.23907 -10.19444 -9.28020 -9.17325 -8.73761 -8.40455 -8.21989 -6.63730 -6.43395 -3.90398 2.15026 2.53113 3.29426 3.34753 3.51102 3.72888 3.86651 4.22109 4.53597 4.62824 4.69794 4.79641 4.98192 5.06882 5.20750 5.23299 5.26504 5.31146 5.36471 5.46079 5.54835 5.58249 5.63363 5.72197 5.76022 5.81774 5.93788 6.02070 6.14933 6.18490 6.28430 6.49630 6.77240 6.81507 6.88906 7.07306 7.09075 7.37084 7.49344 7.68120 7.94648 8.22237 8.54999 9.07758 9.79932 10.81436 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.047002 B = 0.003091 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.574947 B = 9056.610916 C = 9350.612992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.039 0.961 4 C -0.117 4.117 5 C 0.160 3.840 6 H 0.069 0.931 7 N -0.754 5.754 8 C 0.129 3.871 9 C -0.143 4.143 10 C -0.185 4.185 11 C 0.116 3.884 12 O -0.213 6.213 13 C -0.468 4.468 14 H 0.079 0.921 15 C 0.006 3.994 16 N -0.890 5.890 17 Si 1.095 2.905 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.134 4.134 24 C 0.060 3.940 25 N -0.686 5.686 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.390 0.610 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.280 0.720 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.762 -1.451 10.899 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 H 0.056 0.944 4 C -0.156 4.156 5 C 0.054 3.946 6 H 0.087 0.913 7 N -0.388 5.388 8 C 0.031 3.969 9 C -0.165 4.165 10 C -0.205 4.205 11 C 0.064 3.936 12 O -0.119 6.119 13 C -0.545 4.545 14 H 0.097 0.903 15 C -0.198 4.198 16 N -0.523 5.523 17 Si 0.919 3.081 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.173 4.173 22 C -0.169 4.169 23 C -0.173 4.173 24 C -0.070 4.070 25 N -0.319 5.319 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.224 0.776 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.342 -1.896 9.639 20.807 hybrid contribution -1.387 0.655 1.266 1.989 sum -19.730 -1.242 10.905 22.577 Atomic orbital electron populations 1.21818 0.94190 1.02624 1.01686 1.21414 0.95176 0.95196 0.90601 0.94352 1.21884 0.94939 1.01806 0.96963 1.20706 0.92824 0.95614 0.85503 0.91261 1.44274 1.15273 1.45502 1.33714 1.17408 0.86129 0.97901 0.95501 1.20255 0.96665 1.02016 0.97573 1.21007 0.94719 1.01591 1.03159 1.19079 0.86063 0.94558 0.93941 1.83672 1.25582 1.63312 1.39371 1.22101 1.07342 1.23785 1.01262 0.90317 1.26426 0.91351 0.97998 1.04007 1.70575 1.37395 1.23128 1.21218 0.83123 0.76869 0.75115 0.72965 1.19917 1.20906 1.20916 1.19999 0.96169 1.02843 0.98269 1.20175 0.94326 1.00596 1.01835 1.22130 1.00825 1.00530 0.93832 1.21901 0.87258 0.98750 0.99087 1.60344 1.07489 1.59408 1.04635 0.92760 0.92026 0.91711 0.91144 0.90842 0.77628 0.87528 0.85413 0.90973 0.86771 0.87154 0.91109 0.91012 0.90665 0.95164 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.43 37.16 0.35 -0.64 16 2 C 0.09 0.72 3.04 -67.72 -0.21 0.52 16 3 H 0.04 0.34 8.14 -51.92 -0.42 -0.09 16 4 C -0.12 -1.12 4.85 -26.65 -0.13 -1.25 16 5 C 0.16 1.85 2.21 -67.81 -0.15 1.70 16 6 H 0.07 0.88 6.49 -51.93 -0.34 0.54 16 7 N -0.75 -10.22 5.26 -52.00 -0.27 -10.49 16 8 C 0.13 2.24 6.64 -83.71 -0.56 1.69 16 9 C -0.14 -2.69 9.89 -39.40 -0.39 -3.08 16 10 C -0.18 -4.16 9.16 -39.42 -0.36 -4.52 16 11 C 0.12 2.87 6.65 -39.09 -0.26 2.61 16 12 O -0.21 -6.21 9.16 -0.06 0.00 -6.21 16 13 C -0.47 -13.60 9.48 30.87 0.29 -13.30 16 14 H 0.08 2.15 5.20 -52.49 -0.27 1.88 16 15 C 0.01 0.18 5.49 -17.52 -0.10 0.08 16 16 N -0.89 -27.37 13.70 55.48 0.76 -26.61 16 17 Si 1.09 24.42 29.92 -169.99 -5.09 19.34 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 C -0.15 -3.29 9.98 -39.42 -0.39 -3.69 16 22 C -0.15 -2.69 8.87 -39.40 -0.35 -3.04 16 23 C -0.13 -1.50 5.62 -26.65 -0.15 -1.64 16 24 C 0.06 0.55 6.55 -3.84 -0.03 0.52 16 25 N -0.69 -5.79 6.50 -106.75 -0.69 -6.48 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.39 4.72 8.62 -40.82 -0.35 4.37 16 32 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.13 2.92 5.63 -52.49 -0.30 2.62 16 34 H 0.28 8.82 7.97 -40.82 -0.33 8.49 16 35 H 0.11 2.35 8.06 -52.49 -0.42 1.92 16 36 H 0.11 1.75 6.08 -52.49 -0.32 1.43 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.34 2.31 8.79 -39.30 -0.35 1.96 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -31.60 329.59 -8.84 -40.45 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.09 Total: 9.08 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.42 Total: -24.04 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.21 Total: -43.58 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: 0.00 Total: -6.21 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.09 Total: 19.34 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.60 -8.84 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692183784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.778 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds