Wall clock time and date at job start Thu Apr 9 2020 14:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.45835 * 2 1 4 4 C 1.53046 * 109.45593 * 240.09606 * 2 1 3 5 5 C 1.53118 * 109.27355 * 180.87231 * 4 2 1 6 6 H 1.08990 * 109.52383 * 297.62005 * 5 4 2 7 7 N 1.46504 * 109.52095 * 177.49017 * 5 4 2 8 8 C 1.39781 * 120.00018 * 155.12837 * 7 5 4 9 9 C 1.38944 * 120.00797 * 180.02562 * 8 7 5 10 10 C 1.38008 * 119.99837 * 180.02562 * 9 8 7 11 11 C 1.38904 * 120.00052 * 0.02566 * 10 9 8 12 12 O 1.35799 * 119.99221 * 179.97438 * 11 10 9 13 13 C 1.34816 * 116.99847 * 5.54144 * 12 11 10 14 14 H 1.07999 * 120.00151 * 354.94468 * 13 12 11 15 15 C 1.38624 * 119.99700 * 174.93939 * 13 12 11 16 16 N 1.31577 * 120.00117 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99565 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46831 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.47388 * 300.00072 * 17 15 13 20 20 H 1.48493 * 109.47174 * 60.00497 * 17 15 13 21 21 C 1.38891 * 120.01480 * 0.22999 * 11 10 9 22 22 C 1.38010 * 120.00683 * 359.48725 * 21 11 10 23 23 C 1.53117 * 109.21107 * 57.55788 * 5 4 2 24 24 C 1.53039 * 109.27826 * 302.37287 * 23 5 4 25 25 N 1.46843 * 109.52378 * 59.18576 * 24 23 5 26 26 H 1.08994 * 109.47246 * 300.01842 * 1 2 3 27 27 H 1.09005 * 109.46833 * 60.02233 * 1 2 3 28 28 H 1.09005 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.55957 * 60.89400 * 4 2 1 30 30 H 1.09006 * 109.44701 * 300.77961 * 4 2 1 31 31 H 0.96997 * 119.99734 * 335.12649 * 7 5 4 32 32 H 1.08006 * 120.00324 * 0.02562 * 9 8 7 33 33 H 1.07998 * 120.00424 * 180.02562 * 10 9 8 34 34 H 0.96998 * 119.99784 * 359.97438 * 16 15 13 35 35 H 1.07998 * 120.00215 * 179.74639 * 21 11 10 36 36 H 1.08000 * 120.00977 * 180.27752 * 22 21 11 37 37 H 1.08999 * 109.51040 * 62.31865 * 23 5 4 38 38 H 1.09001 * 109.50104 * 182.39685 * 23 5 4 39 39 H 1.09004 * 109.45844 * 179.20180 * 24 23 5 40 40 H 1.09004 * 109.46012 * 299.17523 * 24 23 5 41 41 H 1.00893 * 111.00128 * 174.16586 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7194 -1.2509 5 6 3.5708 -0.7361 -1.2358 6 1 3.9465 0.2865 -1.2679 7 7 4.0639 -1.4757 -2.4004 8 6 5.3405 -1.2135 -2.9056 9 6 5.8081 -1.9145 -4.0104 10 6 7.0688 -1.6559 -4.5087 11 6 7.8704 -0.6952 -3.9055 12 8 9.1111 -0.4412 -4.3957 13 6 9.4598 -1.0714 -5.5353 14 1 8.7971 -1.8041 -5.9717 15 6 10.6688 -0.7788 -6.1471 16 7 11.4763 0.1136 -5.6152 17 14 11.1522 -1.6525 -7.7258 18 1 12.4814 -1.1652 -8.1742 19 1 11.2186 -3.1158 -7.4815 20 1 10.1412 -1.3715 -8.7766 21 6 7.4054 0.0020 -2.7979 22 6 6.1425 -0.2522 -2.3027 23 6 4.0546 -1.4190 0.0464 24 6 3.4864 -0.6779 1.2589 25 7 2.0193 -0.6918 1.1993 26 1 -0.3633 0.5141 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3634 -1.0277 0.0005 29 1 1.6903 -0.1961 -2.1408 30 1 1.6647 -1.7429 -1.2592 31 1 3.5044 -2.1474 -2.8207 32 1 5.1850 -2.6618 -4.4792 33 1 7.4322 -2.2004 -5.3677 34 1 11.2254 0.5670 -4.7953 35 1 8.0304 0.7460 -2.3265 36 1 5.7791 0.2931 -1.4442 37 1 3.7122 -2.4538 0.0592 38 1 5.1437 -1.3957 0.0825 39 1 3.8175 -1.1702 2.1733 40 1 3.8403 0.3531 1.2529 41 1 1.6197 -0.2926 2.0353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692183784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:12 Heat of formation + Delta-G solvation = -31.500556 kcal Electronic energy + Delta-G solvation = -20903.116017 eV Core-core repulsion = 17781.850371 eV Total energy + Delta-G solvation = -3121.265646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97448 -40.06571 -38.50739 -35.82790 -34.12916 -33.22941 -32.08868 -31.49850 -28.62395 -27.73228 -26.75009 -24.54321 -23.38372 -22.98706 -21.94012 -20.81269 -20.04299 -18.79381 -17.79692 -17.36644 -16.98329 -16.05127 -16.03036 -15.73784 -15.54811 -15.45820 -15.01693 -14.73091 -14.55924 -14.40039 -14.09600 -13.46538 -13.31507 -13.20594 -12.96865 -12.78120 -12.65753 -12.52802 -12.17532 -12.00475 -11.95072 -11.91763 -11.70837 -11.44293 -11.19540 -10.85571 -10.22406 -9.86196 -9.40140 -8.87329 -8.01163 -6.12638 0.49783 0.85271 1.49801 1.63066 1.80174 2.40659 2.55106 2.90103 3.19062 3.21244 3.47692 3.75235 3.91727 3.96910 4.06832 4.09238 4.19626 4.38018 4.41596 4.47763 4.53663 4.55548 4.63762 4.80533 4.84632 4.87831 4.94484 5.02390 5.11348 5.14127 5.18205 5.20288 5.30865 5.39758 5.45470 5.49437 5.75988 5.87518 6.08625 6.29967 6.50751 6.57092 6.95766 6.99620 7.76754 8.58859 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.047002 B = 0.003091 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.574947 B = 9056.610916 C = 9350.612992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.037 0.963 4 C -0.111 4.111 5 C 0.156 3.844 6 H 0.063 0.937 7 N -0.739 5.739 8 C 0.159 3.841 9 C -0.146 4.146 10 C -0.190 4.190 11 C 0.063 3.937 12 O -0.263 6.263 13 C -0.482 4.482 14 H 0.088 0.912 15 C -0.051 4.051 16 N -0.925 5.925 17 Si 1.145 2.855 18 H -0.274 1.274 19 H -0.261 1.261 20 H -0.261 1.261 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.130 4.130 24 C 0.063 3.937 25 N -0.689 5.689 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.403 0.597 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.258 0.742 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.032 0.968 41 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.194 -2.465 11.552 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 H 0.055 0.945 4 C -0.149 4.149 5 C 0.050 3.950 6 H 0.081 0.919 7 N -0.372 5.372 8 C 0.058 3.942 9 C -0.169 4.169 10 C -0.210 4.210 11 C 0.014 3.986 12 O -0.172 6.172 13 C -0.558 4.558 14 H 0.105 0.895 15 C -0.245 4.245 16 N -0.561 5.561 17 Si 0.961 3.039 18 H -0.199 1.199 19 H -0.185 1.185 20 H -0.186 1.186 21 C -0.174 4.174 22 C -0.168 4.168 23 C -0.169 4.169 24 C -0.067 4.067 25 N -0.323 5.323 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.238 0.762 32 H 0.158 0.842 33 H 0.135 0.865 34 H 0.066 0.934 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.887 -2.929 10.352 24.389 hybrid contribution -0.704 0.948 1.317 1.769 sum -22.591 -1.981 11.669 25.504 Atomic orbital electron populations 1.21775 0.92813 1.02695 1.02553 1.21432 0.96229 0.94793 0.89952 0.94518 1.21837 0.92879 1.02250 0.97964 1.20903 0.94488 0.94909 0.84706 0.91857 1.44401 1.13633 1.45339 1.33829 1.17536 0.87102 0.95695 0.93900 1.20513 0.95595 1.02787 0.97960 1.21072 0.95973 1.00989 1.02916 1.19598 0.85930 0.97086 0.95962 1.83635 1.28181 1.65146 1.40205 1.22520 1.07768 1.23873 1.01642 0.89484 1.28331 0.91305 0.97925 1.06969 1.70716 1.38502 1.25602 1.21276 0.82588 0.76953 0.75099 0.69287 1.19924 1.18537 1.18564 1.20225 0.97443 1.02416 0.97363 1.20421 0.93021 1.00886 1.02474 1.22049 0.99873 1.00510 0.94483 1.21837 0.87829 0.98593 0.98420 1.60324 1.06912 1.59703 1.05312 0.91717 0.91444 0.91990 0.90655 0.90636 0.76175 0.84171 0.86458 0.93376 0.86834 0.84269 0.91562 0.92596 0.89764 0.95017 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.43 71.98 0.68 -0.76 16 2 C 0.09 1.15 3.04 44.94 0.14 1.29 16 3 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 4 C -0.11 -1.72 4.85 30.65 0.15 -1.57 16 5 C 0.16 3.10 2.21 45.07 0.10 3.20 16 6 H 0.06 1.39 6.49 -2.39 -0.02 1.38 16 7 N -0.74 -17.42 5.26 -318.43 -1.67 -19.10 16 8 C 0.16 5.12 6.64 38.21 0.25 5.37 16 9 C -0.15 -5.21 9.89 22.38 0.22 -4.99 16 10 C -0.19 -8.61 9.16 22.37 0.20 -8.41 16 11 C 0.06 3.26 6.65 22.59 0.15 3.41 16 12 O -0.26 -16.22 9.16 -23.14 -0.21 -16.43 16 13 C -0.48 -29.22 9.48 67.91 0.64 -28.58 16 14 H 0.09 4.92 5.20 -2.91 -0.02 4.90 16 15 C -0.05 -3.01 5.49 84.82 0.47 -2.54 16 16 N -0.92 -59.85 13.70 21.61 0.30 -59.55 16 17 Si 1.14 49.76 29.92 68.60 2.05 51.81 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 C -0.15 -6.77 9.98 22.37 0.22 -6.55 16 22 C -0.15 -5.09 8.87 22.39 0.20 -4.89 16 23 C -0.13 -2.55 5.62 30.65 0.17 -2.38 16 24 C 0.06 0.98 6.55 86.33 0.57 1.55 16 25 N -0.69 -9.41 6.50 -491.65 -3.20 -12.61 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.40 8.04 8.62 -92.71 -0.80 7.24 16 32 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 33 H 0.12 5.47 5.63 -2.91 -0.02 5.45 16 34 H 0.26 17.41 7.97 -92.71 -0.74 16.67 16 35 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 36 H 0.14 4.05 6.08 -2.91 -0.02 4.03 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.28 7.70 -2.39 -0.02 1.26 16 39 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.35 3.62 8.79 -89.70 -0.79 2.83 16 Total: -1.00 -72.72 329.59 0.92 -71.80 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: -0.51 Total: 29.92 kcal Atomic # 6 Polarization: -50.01 SS G_CDS: 4.16 Total: -45.85 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -4.58 Total: -91.26 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.21 Total: -16.43 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.81 kcal Total: -72.72 0.92 -71.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692183784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.304 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds