Wall clock time and date at job start Thu Apr 9 2020 14:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09012 * 109.46085 * 2 1 4 4 C 1.53038 * 109.45334 * 119.97115 * 2 1 3 5 5 C 1.53119 * 109.27982 * 179.19135 * 4 2 1 6 6 H 1.08998 * 109.57889 * 182.40951 * 5 4 2 7 7 N 1.46505 * 109.52257 * 62.25311 * 5 4 2 8 8 C 1.39777 * 120.00305 * 155.32097 * 7 5 4 9 9 C 1.38943 * 120.00777 * 179.97438 * 8 7 5 10 10 C 1.38014 * 119.99201 * 180.27420 * 9 8 7 11 11 C 1.38893 * 120.00778 * 359.49313 * 10 9 8 12 12 O 1.35796 * 119.99965 * 180.23531 * 11 10 9 13 13 C 1.34809 * 117.00833 * 174.73324 * 12 11 10 14 14 H 1.08003 * 119.99228 * 5.05017 * 13 12 11 15 15 C 1.38622 * 120.00389 * 185.05605 * 13 12 11 16 16 N 1.31577 * 119.99898 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99884 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47174 * 90.00068 * 17 15 13 19 19 H 1.48503 * 109.46898 * 210.00043 * 17 15 13 20 20 H 1.48503 * 109.47025 * 329.99962 * 17 15 13 21 21 C 1.38905 * 120.01240 * 0.50251 * 11 10 9 22 22 C 1.38011 * 120.00237 * 359.75622 * 21 11 10 23 23 C 1.53121 * 109.16147 * 302.34958 * 5 4 2 24 24 C 1.53034 * 109.27968 * 57.65049 * 23 5 4 25 25 N 1.46840 * 109.46555 * 240.02147 * 2 1 3 26 26 H 1.08999 * 109.47357 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47436 * 299.98333 * 1 2 3 28 28 H 1.09003 * 109.47160 * 59.98023 * 1 2 3 29 29 H 1.08998 * 109.50392 * 59.24972 * 4 2 1 30 30 H 1.09000 * 109.50242 * 299.13434 * 4 2 1 31 31 H 0.97000 * 119.99980 * 335.31195 * 7 5 4 32 32 H 1.08000 * 120.00621 * 359.97438 * 9 8 7 33 33 H 1.08008 * 119.99318 * 179.72823 * 10 9 8 34 34 H 0.96994 * 120.00021 * 180.02562 * 16 15 13 35 35 H 1.07991 * 119.99952 * 179.72544 * 21 11 10 36 36 H 1.07997 * 120.00060 * 179.97438 * 22 21 11 37 37 H 1.08997 * 109.50126 * 177.59426 * 23 5 4 38 38 H 1.09003 * 109.50107 * 297.67500 * 23 5 4 39 39 H 1.09001 * 109.46693 * 60.83890 * 24 23 5 40 40 H 1.09000 * 109.46210 * 180.81792 * 24 23 5 41 41 H 1.00900 * 111.00183 * 302.34969 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7363 1.2359 6 1 3.9385 -1.2858 2.1023 7 7 4.0746 0.6388 1.2784 8 6 5.3522 0.8998 1.7817 9 6 5.8303 2.2037 1.8216 10 6 7.0941 2.4604 2.3133 11 6 7.8839 1.4167 2.7780 12 8 9.1254 1.6700 3.2663 13 6 9.7968 0.6305 3.8012 14 1 9.3784 -0.3641 3.7541 15 6 11.0239 0.8381 4.4117 16 7 11.6788 -0.1764 4.9342 17 14 11.7469 2.5585 4.4938 18 1 11.2935 3.2271 5.7398 19 1 13.2295 2.4731 4.4893 20 1 11.2927 3.3431 3.3176 21 6 7.4061 0.1129 2.7384 22 6 6.1445 -0.1449 2.2418 23 6 4.0546 -1.4191 -0.0464 24 6 3.4865 -0.6780 -1.2588 25 7 2.0193 -0.6918 -1.1992 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5136 0.8901 28 1 -0.3633 0.5141 -0.8898 29 1 1.6655 -1.7446 1.2578 30 1 1.6892 -0.1981 2.1399 31 1 3.5216 1.3681 0.9572 32 1 5.2150 3.0158 1.4634 33 1 7.4675 3.4735 2.3403 34 1 12.5372 -0.0311 5.3617 35 1 8.0221 -0.6989 3.0957 36 1 5.7733 -1.1586 2.2106 37 1 5.1437 -1.3951 -0.0826 38 1 3.7127 -2.4540 -0.0588 39 1 3.8405 0.3530 -1.2530 40 1 3.8174 -1.1704 -2.1732 41 1 1.6646 -1.6354 -1.2424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692183785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:14 Heat of formation + Delta-G solvation = -1.022072 kcal Electronic energy + Delta-G solvation = -21183.759703 eV Core-core repulsion = 18063.815703 eV Total energy + Delta-G solvation = -3119.944000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95529 -38.85007 -36.87571 -34.25971 -32.49977 -32.21323 -30.66701 -30.14770 -27.46378 -26.90537 -24.89084 -23.75202 -22.13070 -21.67561 -21.09793 -19.53590 -17.91872 -17.44520 -16.22092 -15.99284 -15.65178 -15.08552 -14.61917 -14.36950 -14.10244 -13.93187 -13.71931 -13.44367 -13.33583 -12.80956 -12.69404 -12.38758 -12.20820 -12.17479 -11.98951 -11.77013 -11.48736 -11.39229 -11.18717 -10.98284 -10.87255 -10.68406 -10.59039 -10.08238 -9.30212 -9.22945 -8.59404 -8.50011 -8.25304 -6.50240 -6.30669 -3.95069 2.11436 2.47043 3.28132 3.31646 3.47020 3.73174 4.00109 4.32627 4.49184 4.57955 4.65706 4.76108 4.91519 5.02287 5.05863 5.19844 5.20658 5.30971 5.37809 5.45091 5.55526 5.60931 5.65424 5.75942 5.78615 5.85626 5.89482 5.99117 6.01275 6.14718 6.22771 6.36992 6.75405 6.83172 6.93218 6.97193 7.16318 7.33836 7.46900 7.82426 7.89473 8.11108 8.20880 9.06037 9.72294 10.77993 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.042421 B = 0.003410 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.893586 B = 8209.596473 C = 8457.932273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.079 0.921 4 C -0.159 4.159 5 C 0.160 3.840 6 H 0.075 0.925 7 N -0.750 5.750 8 C 0.134 3.866 9 C -0.148 4.148 10 C -0.148 4.148 11 C 0.116 3.884 12 O -0.228 6.228 13 C -0.384 4.384 14 H 0.103 0.897 15 C 0.059 3.941 16 N -0.888 5.888 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.260 1.260 21 C -0.177 4.177 22 C -0.146 4.146 23 C -0.175 4.175 24 C 0.062 3.938 25 N -0.682 5.682 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.389 0.611 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.277 0.723 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.014 -0.929 -9.502 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 H 0.097 0.903 4 C -0.199 4.199 5 C 0.053 3.947 6 H 0.093 0.907 7 N -0.386 5.386 8 C 0.036 3.964 9 C -0.171 4.171 10 C -0.167 4.167 11 C 0.065 3.935 12 O -0.135 6.135 13 C -0.460 4.460 14 H 0.120 0.880 15 C -0.142 4.142 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.184 1.184 21 C -0.196 4.196 22 C -0.169 4.169 23 C -0.216 4.216 24 C -0.068 4.068 25 N -0.311 5.311 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.223 0.777 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.126 0.874 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.751 -0.415 -9.767 22.038 hybrid contribution 0.527 -0.014 0.809 0.966 sum -19.223 -0.429 -8.958 21.212 Atomic orbital electron populations 1.21808 0.94384 1.01943 1.02117 1.21526 0.95070 0.98365 0.87727 0.90281 1.22560 0.95528 1.01770 1.00034 1.20665 0.92454 0.84462 0.97092 0.90735 1.44336 1.15259 1.06256 1.72719 1.17439 0.86057 0.93289 0.99609 1.20094 0.96253 0.94265 1.06439 1.19988 0.93809 0.97649 1.05290 1.18960 0.85825 0.92685 0.95992 1.83570 1.23319 1.37505 1.69064 1.20698 1.02100 0.87968 1.35223 0.88004 1.24423 0.95480 0.99004 0.95321 1.69659 1.15364 1.30618 1.37132 0.86183 0.77593 0.83522 0.79574 1.20077 1.21012 1.18446 1.21124 0.96507 0.97164 1.04848 1.20356 0.94791 0.97061 1.04651 1.22742 1.02690 0.99093 0.97072 1.21922 0.86645 1.01441 0.96766 1.60752 1.09154 1.22103 1.39048 0.92804 0.92165 0.91867 0.91012 0.90851 0.77659 0.87143 0.86550 0.91312 0.85023 0.87358 0.90617 0.91923 0.90537 0.91054 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.47 37.16 0.35 -0.63 16 2 C 0.08 0.68 2.87 -67.73 -0.19 0.48 16 3 H 0.08 0.71 6.64 -51.92 -0.34 0.37 16 4 C -0.16 -1.35 5.02 -26.65 -0.13 -1.49 16 5 C 0.16 1.72 2.49 -67.80 -0.17 1.56 16 6 H 0.07 0.90 6.49 -51.93 -0.34 0.57 16 7 N -0.75 -9.35 4.52 -52.00 -0.24 -9.58 16 8 C 0.13 2.19 6.64 -83.71 -0.56 1.63 16 9 C -0.15 -2.51 9.89 -39.40 -0.39 -2.90 16 10 C -0.15 -2.94 9.98 -39.42 -0.39 -3.34 16 11 C 0.12 2.73 6.65 -39.09 -0.26 2.47 16 12 O -0.23 -6.15 8.58 -0.04 0.00 -6.15 16 13 C -0.38 -11.05 9.94 30.87 0.31 -10.74 16 14 H 0.10 2.99 5.43 -52.48 -0.28 2.70 16 15 C 0.06 1.71 5.49 -17.52 -0.10 1.61 16 16 N -0.89 -26.26 13.96 55.48 0.77 -25.48 16 17 Si 0.91 22.22 28.62 -169.99 -4.86 17.36 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.18 -3.85 9.16 -39.42 -0.36 -4.21 16 22 C -0.15 -2.65 8.85 -39.40 -0.35 -3.00 16 23 C -0.18 -1.80 5.69 -26.65 -0.15 -1.95 16 24 C 0.06 0.60 6.41 -3.83 -0.02 0.57 16 25 N -0.68 -5.84 6.50 -106.76 -0.69 -6.54 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.39 4.35 7.02 -40.82 -0.29 4.06 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 34 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.13 3.03 5.63 -52.49 -0.30 2.74 16 36 H 0.11 1.75 6.17 -52.49 -0.32 1.43 16 37 H 0.08 0.94 7.77 -51.93 -0.40 0.53 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.34 2.53 8.79 -39.29 -0.35 2.18 16 LS Contribution 325.11 15.07 4.90 4.90 Total: -1.00 -29.72 325.11 -8.50 -38.22 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.96 Total: 7.22 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.42 Total: -19.94 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: -0.15 Total: -41.60 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: 0.00 Total: -6.15 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.86 Total: 17.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.72 -8.50 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692183785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.202 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds