Wall clock time and date at job start Thu Apr 9 2020 14:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09012 * 109.46085 * 2 1 4 4 C 1.53038 * 109.45334 * 119.97115 * 2 1 3 5 5 C 1.53119 * 109.27982 * 179.19135 * 4 2 1 6 6 H 1.08998 * 109.57889 * 182.40951 * 5 4 2 7 7 N 1.46505 * 109.52257 * 62.25311 * 5 4 2 8 8 C 1.39777 * 120.00305 * 155.32097 * 7 5 4 9 9 C 1.38943 * 120.00777 * 179.97438 * 8 7 5 10 10 C 1.38014 * 119.99201 * 180.27420 * 9 8 7 11 11 C 1.38893 * 120.00778 * 359.49313 * 10 9 8 12 12 O 1.35796 * 119.99965 * 180.23531 * 11 10 9 13 13 C 1.34809 * 117.00833 * 174.73324 * 12 11 10 14 14 H 1.08003 * 119.99228 * 5.05017 * 13 12 11 15 15 C 1.38622 * 120.00389 * 185.05605 * 13 12 11 16 16 N 1.31577 * 119.99898 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99884 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47174 * 90.00068 * 17 15 13 19 19 H 1.48503 * 109.46898 * 210.00043 * 17 15 13 20 20 H 1.48503 * 109.47025 * 329.99962 * 17 15 13 21 21 C 1.38905 * 120.01240 * 0.50251 * 11 10 9 22 22 C 1.38011 * 120.00237 * 359.75622 * 21 11 10 23 23 C 1.53121 * 109.16147 * 302.34958 * 5 4 2 24 24 C 1.53034 * 109.27968 * 57.65049 * 23 5 4 25 25 N 1.46840 * 109.46555 * 240.02147 * 2 1 3 26 26 H 1.08999 * 109.47357 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47436 * 299.98333 * 1 2 3 28 28 H 1.09003 * 109.47160 * 59.98023 * 1 2 3 29 29 H 1.08998 * 109.50392 * 59.24972 * 4 2 1 30 30 H 1.09000 * 109.50242 * 299.13434 * 4 2 1 31 31 H 0.97000 * 119.99980 * 335.31195 * 7 5 4 32 32 H 1.08000 * 120.00621 * 359.97438 * 9 8 7 33 33 H 1.08008 * 119.99318 * 179.72823 * 10 9 8 34 34 H 0.96994 * 120.00021 * 180.02562 * 16 15 13 35 35 H 1.07991 * 119.99952 * 179.72544 * 21 11 10 36 36 H 1.07997 * 120.00060 * 179.97438 * 22 21 11 37 37 H 1.08997 * 109.50126 * 177.59426 * 23 5 4 38 38 H 1.09003 * 109.50107 * 297.67500 * 23 5 4 39 39 H 1.09001 * 109.46693 * 60.83890 * 24 23 5 40 40 H 1.09000 * 109.46210 * 180.81792 * 24 23 5 41 41 H 1.00900 * 111.00183 * 302.34969 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7363 1.2359 6 1 3.9385 -1.2858 2.1023 7 7 4.0746 0.6388 1.2784 8 6 5.3522 0.8998 1.7817 9 6 5.8303 2.2037 1.8216 10 6 7.0941 2.4604 2.3133 11 6 7.8839 1.4167 2.7780 12 8 9.1254 1.6700 3.2663 13 6 9.7968 0.6305 3.8012 14 1 9.3784 -0.3641 3.7541 15 6 11.0239 0.8381 4.4117 16 7 11.6788 -0.1764 4.9342 17 14 11.7469 2.5585 4.4938 18 1 11.2935 3.2271 5.7398 19 1 13.2295 2.4731 4.4893 20 1 11.2927 3.3431 3.3176 21 6 7.4061 0.1129 2.7384 22 6 6.1445 -0.1449 2.2418 23 6 4.0546 -1.4191 -0.0464 24 6 3.4865 -0.6780 -1.2588 25 7 2.0193 -0.6918 -1.1992 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5136 0.8901 28 1 -0.3633 0.5141 -0.8898 29 1 1.6655 -1.7446 1.2578 30 1 1.6892 -0.1981 2.1399 31 1 3.5216 1.3681 0.9572 32 1 5.2150 3.0158 1.4634 33 1 7.4675 3.4735 2.3403 34 1 12.5372 -0.0311 5.3617 35 1 8.0221 -0.6989 3.0957 36 1 5.7733 -1.1586 2.2106 37 1 5.1437 -1.3951 -0.0826 38 1 3.7127 -2.4540 -0.0588 39 1 3.8405 0.3530 -1.2530 40 1 3.8174 -1.1704 -2.1732 41 1 1.6646 -1.6354 -1.2424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692183785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:14 Heat of formation + Delta-G solvation = -20.806279 kcal Electronic energy + Delta-G solvation = -21184.617611 eV Core-core repulsion = 18063.815703 eV Total energy + Delta-G solvation = -3120.801908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09792 -40.28126 -38.40945 -35.46407 -34.30215 -33.21996 -31.94706 -31.53506 -28.69309 -27.87110 -26.80138 -24.73153 -23.41663 -22.67667 -22.38936 -20.54755 -19.83767 -19.15116 -17.72329 -17.03263 -16.47407 -16.33195 -15.91409 -15.65967 -15.56610 -15.33947 -15.12124 -14.68339 -14.50758 -14.12693 -14.09342 -13.86322 -13.54197 -13.32720 -12.96464 -12.89486 -12.73510 -12.63738 -12.46276 -12.25958 -11.91655 -11.86261 -11.72340 -11.56179 -11.18820 -10.97787 -10.30382 -9.81293 -9.25232 -8.44276 -7.98811 -6.12103 0.55294 0.87855 1.32854 1.37675 1.54453 2.32313 2.59913 2.83890 3.16103 3.29582 3.32498 3.77425 3.87714 3.94304 4.10242 4.13865 4.15239 4.36694 4.43318 4.54767 4.58896 4.69329 4.72449 4.78418 4.86831 4.92992 4.97453 5.01469 5.13856 5.16724 5.20752 5.28318 5.33255 5.38603 5.45632 5.63610 5.82318 5.86420 6.12686 6.13301 6.53736 6.58518 6.91536 7.01179 7.71960 8.68290 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.042421 B = 0.003410 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.893586 B = 8209.596473 C = 8457.932273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.072 0.928 4 C -0.149 4.149 5 C 0.153 3.847 6 H 0.063 0.937 7 N -0.734 5.734 8 C 0.164 3.836 9 C -0.144 4.144 10 C -0.140 4.140 11 C 0.066 3.934 12 O -0.254 6.254 13 C -0.391 4.391 14 H 0.076 0.924 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.263 1.263 21 C -0.188 4.188 22 C -0.154 4.154 23 C -0.170 4.170 24 C 0.068 3.932 25 N -0.682 5.682 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.401 0.599 32 H 0.152 0.848 33 H 0.130 0.870 34 H 0.282 0.718 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.104 0.316 -10.808 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 H 0.091 0.909 4 C -0.189 4.189 5 C 0.048 3.952 6 H 0.081 0.919 7 N -0.369 5.369 8 C 0.062 3.938 9 C -0.167 4.167 10 C -0.160 4.160 11 C 0.017 3.983 12 O -0.163 6.163 13 C -0.468 4.468 14 H 0.093 0.907 15 C -0.193 4.193 16 N -0.574 5.574 17 Si 0.795 3.205 18 H -0.192 1.192 19 H -0.194 1.194 20 H -0.187 1.187 21 C -0.208 4.208 22 C -0.176 4.176 23 C -0.211 4.211 24 C -0.062 4.062 25 N -0.311 5.311 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.238 0.762 32 H 0.169 0.831 33 H 0.147 0.853 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.930 0.817 -11.111 25.493 hybrid contribution 1.105 -0.494 1.048 1.601 sum -21.825 0.322 -10.063 24.035 Atomic orbital electron populations 1.21764 0.93106 1.02556 1.02365 1.21537 0.96017 0.97797 0.87168 0.90940 1.22502 0.93169 1.02847 1.00398 1.20850 0.94326 0.83114 0.96956 0.91857 1.44415 1.13632 1.07801 1.71006 1.17550 0.86894 0.92689 0.96620 1.20485 0.95374 0.95589 1.05204 1.20289 0.94333 0.97396 1.03974 1.19462 0.85787 0.94370 0.98672 1.83497 1.25202 1.36563 1.71060 1.20661 1.02707 0.87826 1.35594 0.90654 1.25263 0.95806 1.03108 0.95126 1.69749 1.16197 1.32645 1.38823 0.85187 0.77385 0.78439 0.79496 1.19185 1.19417 1.18719 1.21057 0.97820 0.96143 1.05782 1.20451 0.93688 0.98705 1.04757 1.22687 1.01181 1.00166 0.97063 1.21821 0.87399 1.00428 0.96578 1.60740 1.08220 1.22844 1.39347 0.92035 0.91447 0.92130 0.89594 0.90588 0.76196 0.83071 0.85252 0.90834 0.87789 0.85635 0.92964 0.90359 0.91913 0.90591 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.47 71.98 0.68 -0.73 16 2 C 0.09 1.08 2.87 44.94 0.13 1.21 16 3 H 0.07 1.03 6.64 -2.38 -0.02 1.02 16 4 C -0.15 -2.00 5.02 30.65 0.15 -1.85 16 5 C 0.15 2.89 2.49 45.07 0.11 3.00 16 6 H 0.06 1.39 6.49 -2.39 -0.02 1.37 16 7 N -0.73 -15.97 4.52 -318.42 -1.44 -17.41 16 8 C 0.16 4.96 6.64 38.21 0.25 5.22 16 9 C -0.14 -4.47 9.89 22.39 0.22 -4.24 16 10 C -0.14 -5.45 9.98 22.37 0.22 -5.23 16 11 C 0.07 3.16 6.65 22.59 0.15 3.31 16 12 O -0.25 -14.29 8.58 -23.04 -0.20 -14.49 16 13 C -0.39 -23.84 9.94 67.91 0.68 -23.17 16 14 H 0.08 4.82 5.43 -2.91 -0.02 4.81 16 15 C 0.00 0.23 5.49 84.82 0.47 0.69 16 16 N -0.93 -57.41 13.96 21.61 0.30 -57.11 16 17 Si 0.97 46.94 28.62 68.60 1.96 48.91 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 21 C -0.19 -8.58 9.16 22.38 0.20 -8.38 16 22 C -0.15 -5.52 8.85 22.39 0.20 -5.32 16 23 C -0.17 -3.11 5.69 30.65 0.17 -2.94 16 24 C 0.07 1.13 6.41 86.32 0.55 1.69 16 25 N -0.68 -9.51 6.50 -491.68 -3.20 -12.71 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.40 7.33 7.02 -92.71 -0.65 6.68 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 34 H 0.28 15.96 8.31 -92.71 -0.77 15.18 16 35 H 0.10 5.25 5.63 -2.92 -0.02 5.23 16 36 H 0.13 4.01 6.17 -2.91 -0.02 3.99 16 37 H 0.05 1.22 7.77 -2.39 -0.02 1.20 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.23 7.69 -2.39 -0.02 1.22 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.35 3.98 8.79 -89.69 -0.79 3.19 16 Total: -1.00 -67.74 325.11 1.24 -66.51 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.39 Total: 23.04 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 4.20 Total: -36.74 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -4.34 Total: -87.22 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.20 Total: -14.49 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.96 Total: 48.91 kcal Total: -67.74 1.24 -66.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692183785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.702 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds