Wall clock time and date at job start Thu Apr 9 2020 14:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.45001 * 2 1 4 4 C 1.53037 * 109.46683 * 240.02404 * 2 1 3 5 5 C 1.53114 * 109.27965 * 180.80085 * 4 2 1 6 6 H 1.08996 * 109.52058 * 177.55853 * 5 4 2 7 7 N 1.46496 * 109.52543 * 297.75399 * 5 4 2 8 8 C 1.39782 * 119.99804 * 205.00243 * 7 5 4 9 9 C 1.38954 * 120.00905 * 359.71940 * 8 7 5 10 10 C 1.38010 * 119.99415 * 179.72282 * 9 8 7 11 11 C 1.38897 * 120.00389 * 0.55441 * 10 9 8 12 12 O 1.35798 * 119.99220 * 179.69862 * 11 10 9 13 13 C 1.34810 * 117.00117 * 174.48074 * 12 11 10 14 14 H 1.08004 * 119.99812 * 5.05862 * 13 12 11 15 15 C 1.38627 * 120.00293 * 185.06151 * 13 12 11 16 16 N 1.31585 * 119.99518 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00219 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47285 * 89.99603 * 17 15 13 19 19 H 1.48498 * 109.46911 * 209.99738 * 17 15 13 20 20 H 1.48503 * 109.47008 * 329.99530 * 17 15 13 21 21 C 1.38894 * 120.01762 * 359.72306 * 11 10 9 22 22 C 1.38011 * 120.00317 * 359.97438 * 21 11 10 23 23 C 1.53126 * 109.15632 * 57.65631 * 5 4 2 24 24 C 1.53032 * 109.28049 * 302.34193 * 23 5 4 25 25 N 1.46847 * 109.46188 * 119.96611 * 2 1 3 26 26 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47534 * 299.97483 * 1 2 3 28 28 H 1.08999 * 109.47168 * 59.98119 * 1 2 3 29 29 H 1.08995 * 109.50343 * 300.74831 * 4 2 1 30 30 H 1.08998 * 109.50013 * 60.82347 * 4 2 1 31 31 H 0.96996 * 120.00404 * 24.99524 * 7 5 4 32 32 H 1.07997 * 120.00019 * 0.02562 * 9 8 7 33 33 H 1.07992 * 119.99581 * 180.25648 * 10 9 8 34 34 H 0.96996 * 119.99876 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.00343 * 179.97438 * 21 11 10 36 36 H 1.08000 * 120.00789 * 179.97438 * 22 21 11 37 37 H 1.08998 * 109.50180 * 62.28910 * 23 5 4 38 38 H 1.09008 * 109.49921 * 182.36337 * 23 5 4 39 39 H 1.08994 * 109.46345 * 179.19562 * 24 23 5 40 40 H 1.08999 * 109.46414 * 299.16626 * 24 23 5 41 41 H 1.00898 * 111.00411 * 305.86380 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7209 -1.2499 5 6 3.5710 -0.7359 -1.2355 6 1 3.9380 -1.2862 -2.1018 7 7 4.0746 0.6391 -1.2780 8 6 5.3497 0.9010 -1.7873 9 6 6.1420 -0.1434 -2.2481 10 6 7.3986 0.1161 -2.7562 11 6 7.8759 1.4199 -2.7965 12 8 9.1148 1.6743 -3.2909 13 6 9.4731 2.9686 -3.4081 14 1 8.8196 3.7453 -3.0392 15 6 10.6802 3.3026 -4.0023 16 7 11.4765 2.3562 -4.4513 17 14 11.1770 5.0960 -4.1641 18 1 11.9400 5.5090 -2.9589 19 1 12.0259 5.2675 -5.3703 20 1 9.9599 5.9372 -4.2917 21 6 7.0865 2.4635 -2.3307 22 6 5.8273 2.2052 -1.8282 23 6 4.0548 -1.4186 0.0469 24 6 3.4865 -0.6775 1.2592 25 7 2.0193 -0.6916 1.1995 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5134 0.8901 28 1 -0.3633 0.5141 -0.8898 29 1 1.6660 -1.7447 -1.2575 30 1 1.6890 -0.1986 -2.1399 31 1 3.5232 1.3678 -0.9527 32 1 5.7725 -1.1576 -2.2130 33 1 8.0127 -0.6951 -3.1181 34 1 12.3213 2.5898 -4.8667 35 1 7.4580 3.4771 -2.3617 36 1 5.2136 3.0166 -1.4657 37 1 3.7126 -2.4534 0.0596 38 1 5.1440 -1.3951 0.0830 39 1 3.8174 -1.1697 2.1737 40 1 3.8403 0.3534 1.2533 41 1 1.6194 -0.2924 2.0355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692183786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:16 Heat of formation + Delta-G solvation = -0.788359 kcal Electronic energy + Delta-G solvation = -21110.891502 eV Core-core repulsion = 17990.957637 eV Total energy + Delta-G solvation = -3119.933865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.74954 -38.64577 -36.68513 -34.21985 -32.42071 -32.09693 -30.78030 -29.98662 -27.42014 -26.67387 -25.06636 -23.68752 -22.05484 -21.62576 -20.99993 -19.09588 -17.77404 -16.99750 -16.59360 -16.42466 -15.31306 -15.12968 -14.49147 -14.43983 -14.18318 -13.74354 -13.70671 -13.41487 -13.07634 -12.66578 -12.54197 -12.37909 -12.26143 -12.05108 -11.91904 -11.64497 -11.50215 -11.18502 -11.12584 -11.00782 -10.63677 -10.55967 -10.39781 -10.29542 -9.22110 -9.15702 -8.62639 -8.41311 -8.15162 -6.37320 -6.30920 -3.88247 2.22024 2.59636 3.18975 3.19797 3.24340 3.81335 3.98571 4.07156 4.58121 4.60433 4.70804 4.88958 5.05780 5.14190 5.19205 5.21675 5.38606 5.41789 5.49350 5.51875 5.63564 5.67077 5.75403 5.80364 5.86264 5.88874 5.98644 6.03933 6.13596 6.24499 6.30351 6.57337 6.86157 6.88423 6.94075 7.15567 7.16979 7.33857 7.47344 7.66709 8.01149 8.13457 8.26352 9.14903 9.89888 10.87766 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.003289 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.871908 B = 8510.599038 C = 8782.821769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 H 0.036 0.964 4 C -0.118 4.118 5 C 0.157 3.843 6 H 0.076 0.924 7 N -0.753 5.753 8 C 0.127 3.873 9 C -0.146 4.146 10 C -0.150 4.150 11 C 0.113 3.887 12 O -0.189 6.189 13 C -0.386 4.386 14 H 0.088 0.912 15 C 0.036 3.964 16 N -0.869 5.869 17 Si 0.937 3.063 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.269 1.269 21 C -0.190 4.190 22 C -0.144 4.144 23 C -0.134 4.134 24 C 0.063 3.937 25 N -0.686 5.686 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.386 0.614 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.267 0.733 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.082 -4.521 8.935 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 H 0.054 0.946 4 C -0.156 4.156 5 C 0.051 3.949 6 H 0.094 0.906 7 N -0.389 5.389 8 C 0.029 3.971 9 C -0.168 4.168 10 C -0.170 4.170 11 C 0.060 3.940 12 O -0.094 6.094 13 C -0.463 4.463 14 H 0.105 0.895 15 C -0.167 4.167 16 N -0.506 5.506 17 Si 0.763 3.237 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.194 1.194 21 C -0.209 4.209 22 C -0.167 4.167 23 C -0.173 4.173 24 C -0.066 4.066 25 N -0.318 5.318 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.220 0.780 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.691 -5.487 8.410 21.217 hybrid contribution 0.216 2.219 0.368 2.260 sum -18.474 -3.268 8.778 20.713 Atomic orbital electron populations 1.21830 0.94445 1.02527 1.01589 1.21425 0.94910 0.95186 0.91078 0.94630 1.21899 0.94943 1.01872 0.96890 1.20717 0.92718 0.84275 0.97218 0.90588 1.44365 1.15580 1.06308 1.72647 1.17399 0.86177 0.93250 1.00297 1.20203 0.94532 0.97029 1.05053 1.20035 0.96133 0.94736 1.06066 1.19233 0.86582 0.93051 0.95105 1.83985 1.24604 1.28202 1.72619 1.21229 1.04433 0.80723 1.39944 0.89507 1.25211 0.95433 0.99716 0.96341 1.70050 1.10692 1.32241 1.37630 0.85770 0.78871 0.80974 0.78122 1.20080 1.20405 1.19385 1.20977 0.94948 0.99758 1.05257 1.20216 0.96687 0.94038 1.05711 1.22082 1.00944 0.99421 0.94867 1.21813 0.86909 0.99268 0.98653 1.60368 1.07709 1.59240 1.04503 0.91747 0.92905 0.92118 0.90206 0.91141 0.77971 0.87054 0.86574 0.92320 0.85606 0.87897 0.91116 0.90933 0.91221 0.94732 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.43 37.16 0.35 -0.69 16 2 C 0.08 0.73 2.88 -67.72 -0.19 0.53 16 3 H 0.04 0.34 6.64 -51.93 -0.34 -0.01 16 4 C -0.12 -1.11 5.04 -26.65 -0.13 -1.24 16 5 C 0.16 1.79 2.49 -67.81 -0.17 1.62 16 6 H 0.08 0.93 6.49 -51.93 -0.34 0.59 16 7 N -0.75 -10.00 4.52 -52.00 -0.24 -10.24 16 8 C 0.13 2.17 6.64 -83.70 -0.56 1.62 16 9 C -0.15 -2.64 8.87 -39.40 -0.35 -2.99 16 10 C -0.15 -3.22 9.98 -39.42 -0.39 -3.62 16 11 C 0.11 2.78 6.65 -39.09 -0.26 2.52 16 12 O -0.19 -5.54 9.76 -0.04 0.00 -5.54 16 13 C -0.39 -11.09 9.48 30.88 0.29 -10.80 16 14 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 15 C 0.04 1.01 5.49 -17.51 -0.10 0.92 16 16 N -0.87 -26.21 13.67 55.48 0.76 -25.45 16 17 Si 0.94 21.09 29.55 -169.99 -5.02 16.06 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 C -0.19 -4.20 9.16 -39.42 -0.36 -4.56 16 22 C -0.14 -2.69 9.89 -39.40 -0.39 -3.08 16 23 C -0.13 -1.47 5.71 -26.65 -0.15 -1.63 16 24 C 0.06 0.64 6.40 -3.84 -0.02 0.61 16 25 N -0.69 -6.13 6.50 -106.77 -0.69 -6.83 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.39 4.73 7.02 -40.82 -0.29 4.45 16 32 H 0.11 1.73 6.18 -52.49 -0.32 1.41 16 33 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16 36 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.91 7.80 -51.92 -0.40 0.51 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.40 7.69 -51.93 -0.40 0.00 16 41 H 0.34 2.58 8.79 -39.29 -0.35 2.23 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -30.95 326.30 -8.66 -39.62 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.95 Total: 8.25 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.44 Total: -20.79 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.17 Total: -42.52 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.00 Total: -5.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.95 -8.66 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692183786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.831 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds