Wall clock time and date at job start Thu Apr 9 2020 14:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.45001 * 2 1 4 4 C 1.53037 * 109.46683 * 240.02404 * 2 1 3 5 5 C 1.53114 * 109.27965 * 180.80085 * 4 2 1 6 6 H 1.08996 * 109.52058 * 177.55853 * 5 4 2 7 7 N 1.46496 * 109.52543 * 297.75399 * 5 4 2 8 8 C 1.39782 * 119.99804 * 205.00243 * 7 5 4 9 9 C 1.38954 * 120.00905 * 359.71940 * 8 7 5 10 10 C 1.38010 * 119.99415 * 179.72282 * 9 8 7 11 11 C 1.38897 * 120.00389 * 0.55441 * 10 9 8 12 12 O 1.35798 * 119.99220 * 179.69862 * 11 10 9 13 13 C 1.34810 * 117.00117 * 174.48074 * 12 11 10 14 14 H 1.08004 * 119.99812 * 5.05862 * 13 12 11 15 15 C 1.38627 * 120.00293 * 185.06151 * 13 12 11 16 16 N 1.31585 * 119.99518 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00219 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47285 * 89.99603 * 17 15 13 19 19 H 1.48498 * 109.46911 * 209.99738 * 17 15 13 20 20 H 1.48503 * 109.47008 * 329.99530 * 17 15 13 21 21 C 1.38894 * 120.01762 * 359.72306 * 11 10 9 22 22 C 1.38011 * 120.00317 * 359.97438 * 21 11 10 23 23 C 1.53126 * 109.15632 * 57.65631 * 5 4 2 24 24 C 1.53032 * 109.28049 * 302.34193 * 23 5 4 25 25 N 1.46847 * 109.46188 * 119.96611 * 2 1 3 26 26 H 1.09001 * 109.46881 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47534 * 299.97483 * 1 2 3 28 28 H 1.08999 * 109.47168 * 59.98119 * 1 2 3 29 29 H 1.08995 * 109.50343 * 300.74831 * 4 2 1 30 30 H 1.08998 * 109.50013 * 60.82347 * 4 2 1 31 31 H 0.96996 * 120.00404 * 24.99524 * 7 5 4 32 32 H 1.07997 * 120.00019 * 0.02562 * 9 8 7 33 33 H 1.07992 * 119.99581 * 180.25648 * 10 9 8 34 34 H 0.96996 * 119.99876 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.00343 * 179.97438 * 21 11 10 36 36 H 1.08000 * 120.00789 * 179.97438 * 22 21 11 37 37 H 1.08998 * 109.50180 * 62.28910 * 23 5 4 38 38 H 1.09008 * 109.49921 * 182.36337 * 23 5 4 39 39 H 1.08994 * 109.46345 * 179.19562 * 24 23 5 40 40 H 1.08999 * 109.46414 * 299.16626 * 24 23 5 41 41 H 1.00898 * 111.00411 * 305.86380 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7209 -1.2499 5 6 3.5710 -0.7359 -1.2355 6 1 3.9380 -1.2862 -2.1018 7 7 4.0746 0.6391 -1.2780 8 6 5.3497 0.9010 -1.7873 9 6 6.1420 -0.1434 -2.2481 10 6 7.3986 0.1161 -2.7562 11 6 7.8759 1.4199 -2.7965 12 8 9.1148 1.6743 -3.2909 13 6 9.4731 2.9686 -3.4081 14 1 8.8196 3.7453 -3.0392 15 6 10.6802 3.3026 -4.0023 16 7 11.4765 2.3562 -4.4513 17 14 11.1770 5.0960 -4.1641 18 1 11.9400 5.5090 -2.9589 19 1 12.0259 5.2675 -5.3703 20 1 9.9599 5.9372 -4.2917 21 6 7.0865 2.4635 -2.3307 22 6 5.8273 2.2052 -1.8282 23 6 4.0548 -1.4186 0.0469 24 6 3.4865 -0.6775 1.2592 25 7 2.0193 -0.6916 1.1995 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5134 0.8901 28 1 -0.3633 0.5141 -0.8898 29 1 1.6660 -1.7447 -1.2575 30 1 1.6890 -0.1986 -2.1399 31 1 3.5232 1.3678 -0.9527 32 1 5.7725 -1.1576 -2.2130 33 1 8.0127 -0.6951 -3.1181 34 1 12.3213 2.5898 -4.8667 35 1 7.4580 3.4771 -2.3617 36 1 5.2136 3.0166 -1.4657 37 1 3.7126 -2.4534 0.0596 38 1 5.1440 -1.3951 0.0830 39 1 3.8174 -1.1697 2.1737 40 1 3.8403 0.3534 1.2533 41 1 1.6194 -0.2924 2.0355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692183786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:15 Heat of formation + Delta-G solvation = -21.807448 kcal Electronic energy + Delta-G solvation = -21111.802958 eV Core-core repulsion = 17990.957637 eV Total energy + Delta-G solvation = -3120.845321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97268 -40.09821 -38.26779 -35.46404 -34.11240 -33.16119 -32.10458 -31.46229 -28.63217 -27.77551 -26.97022 -24.73592 -23.34397 -22.75835 -22.38922 -20.26539 -19.50950 -18.74653 -17.89468 -17.32953 -16.64779 -16.17484 -15.98049 -15.64079 -15.52380 -15.33489 -15.14154 -14.63972 -14.38557 -14.08665 -13.87411 -13.56850 -13.42902 -13.27502 -13.01083 -12.81423 -12.72553 -12.62515 -12.49986 -12.15783 -12.05481 -11.91965 -11.59747 -11.22915 -11.08311 -10.86983 -10.17357 -9.77586 -9.34436 -8.39529 -7.92471 -6.03142 0.58422 0.93831 1.36160 1.46048 1.53657 2.22419 2.63995 2.91318 3.25451 3.25985 3.67116 3.79481 3.88007 4.04909 4.13638 4.18309 4.25198 4.41140 4.42349 4.56404 4.61277 4.66919 4.81597 4.83944 4.88811 4.94152 4.99050 5.07176 5.12491 5.18359 5.23804 5.24939 5.29529 5.40529 5.50914 5.55802 5.78600 5.99459 6.11377 6.12544 6.51441 6.63638 7.00922 7.06562 7.93571 8.85139 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.040934 B = 0.003289 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.871908 B = 8510.599038 C = 8782.821769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.083 3.917 3 H 0.031 0.969 4 C -0.112 4.112 5 C 0.151 3.849 6 H 0.073 0.927 7 N -0.738 5.738 8 C 0.157 3.843 9 C -0.144 4.144 10 C -0.155 4.155 11 C 0.062 3.938 12 O -0.243 6.243 13 C -0.406 4.406 14 H 0.098 0.902 15 C -0.029 4.029 16 N -0.927 5.927 17 Si 1.017 2.983 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.254 1.254 21 C -0.193 4.193 22 C -0.148 4.148 23 C -0.131 4.131 24 C 0.066 3.934 25 N -0.685 5.685 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.397 0.603 32 H 0.141 0.859 33 H 0.112 0.888 34 H 0.270 0.730 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.022 0.978 41 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.327 -4.039 10.203 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 H 0.049 0.951 4 C -0.150 4.150 5 C 0.046 3.954 6 H 0.091 0.909 7 N -0.372 5.372 8 C 0.056 3.944 9 C -0.166 4.166 10 C -0.175 4.175 11 C 0.012 3.988 12 O -0.151 6.151 13 C -0.483 4.483 14 H 0.115 0.885 15 C -0.225 4.225 16 N -0.567 5.567 17 Si 0.836 3.164 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.178 1.178 21 C -0.212 4.212 22 C -0.171 4.171 23 C -0.171 4.171 24 C -0.064 4.064 25 N -0.318 5.318 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.232 0.768 32 H 0.159 0.841 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.153 0.847 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.040 0.960 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -22.039 -5.029 9.727 24.610 hybrid contribution 0.871 1.871 0.128 2.068 sum -21.168 -3.158 9.855 23.562 Atomic orbital electron populations 1.21784 0.93059 1.02729 1.02332 1.21457 0.95993 0.94661 0.90557 0.95072 1.21865 0.92944 1.02648 0.97559 1.20924 0.94359 0.82780 0.97359 0.90908 1.44456 1.13901 1.07905 1.70931 1.17505 0.87118 0.92462 0.97286 1.20439 0.93170 0.98850 1.04123 1.20239 0.97443 0.93641 1.06127 1.19721 0.86436 0.95002 0.97620 1.83933 1.27289 1.28549 1.75329 1.21750 1.05108 0.81272 1.40149 0.88513 1.26530 0.95076 1.05147 0.95715 1.70206 1.11564 1.35104 1.39835 0.84613 0.78914 0.74374 0.78461 1.18937 1.19726 1.17754 1.21030 0.96097 0.98776 1.05327 1.20462 0.95648 0.95723 1.05222 1.22035 0.99926 1.00168 0.94943 1.21744 0.87757 0.98363 0.98513 1.60358 1.06795 1.59455 1.05164 0.91792 0.92131 0.91498 0.89390 0.90661 0.76759 0.84105 0.86985 0.92145 0.86478 0.84723 0.90066 0.92599 0.90602 0.96018 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.43 71.98 0.68 -0.84 16 2 C 0.08 1.15 2.88 44.94 0.13 1.28 16 3 H 0.03 0.47 6.64 -2.39 -0.02 0.46 16 4 C -0.11 -1.70 5.04 30.64 0.15 -1.54 16 5 C 0.15 2.95 2.49 45.07 0.11 3.06 16 6 H 0.07 1.52 6.49 -2.39 -0.02 1.51 16 7 N -0.74 -17.13 4.52 -318.42 -1.44 -18.57 16 8 C 0.16 5.02 6.64 38.22 0.25 5.27 16 9 C -0.14 -4.99 8.87 22.39 0.20 -4.80 16 10 C -0.15 -6.81 9.98 22.37 0.22 -6.59 16 11 C 0.06 3.18 6.65 22.59 0.15 3.33 16 12 O -0.24 -15.14 9.76 -23.07 -0.23 -15.37 16 13 C -0.41 -24.44 9.48 67.91 0.64 -23.80 16 14 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 15 C -0.03 -1.68 5.49 84.82 0.47 -1.21 16 16 N -0.93 -58.74 13.67 21.61 0.30 -58.44 16 17 Si 1.02 44.24 29.55 68.60 2.03 46.27 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 21 C -0.19 -8.65 9.16 22.37 0.20 -8.44 16 22 C -0.15 -5.25 9.89 22.39 0.22 -5.03 16 23 C -0.13 -2.53 5.71 30.65 0.18 -2.35 16 24 C 0.07 1.15 6.40 86.32 0.55 1.70 16 25 N -0.68 -9.99 6.50 -491.70 -3.20 -13.19 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.40 8.17 7.02 -92.71 -0.65 7.52 16 32 H 0.14 4.04 6.18 -2.91 -0.02 4.02 16 33 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 34 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.12 5.36 5.63 -2.91 -0.02 5.34 16 36 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.28 7.80 -2.38 -0.02 1.26 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.02 0.44 7.69 -2.39 -0.02 0.42 16 41 H 0.35 4.17 8.79 -89.70 -0.79 3.38 16 Total: -1.00 -71.24 326.30 1.24 -70.01 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.39 Total: 29.25 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 4.17 Total: -39.97 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -4.34 Total: -90.19 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.23 Total: -15.37 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -71.24 1.24 -70.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692183786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.199 kcal (2) G-P(sol) polarization free energy of solvation -71.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds