Wall clock time and date at job start Thu Apr 9 2020 14:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.45732 * 2 1 4 4 C 1.53033 * 109.46331 * 119.98268 * 2 1 3 5 5 C 1.53119 * 109.27571 * 179.18782 * 4 2 1 6 6 H 1.09002 * 109.52368 * 62.31398 * 5 4 2 7 7 N 1.46502 * 109.52564 * 182.44113 * 5 4 2 8 8 C 1.39668 * 120.00469 * 205.00088 * 7 5 4 9 9 C 1.39004 * 120.03812 * 359.97291 * 8 7 5 10 10 C 1.38153 * 120.06281 * 180.02562 * 9 8 7 11 11 C 1.38175 * 120.13969 * 359.72656 * 10 9 8 12 12 C 1.38912 * 120.07851 * 0.54850 * 11 10 9 13 13 O 1.35750 * 120.02810 * 179.71999 * 12 11 10 14 14 C 1.34830 * 116.99737 * 185.26713 * 13 12 11 15 15 H 1.07999 * 120.00483 * 354.94685 * 14 13 12 16 16 C 1.38659 * 120.00085 * 174.94382 * 14 13 12 17 17 N 1.31559 * 120.00105 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99735 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47075 * 270.00088 * 18 16 14 20 20 H 1.48497 * 109.47251 * 149.99835 * 18 16 14 21 21 H 1.48503 * 109.47287 * 29.99879 * 18 16 14 22 22 C 1.38752 * 120.04174 * 179.97438 * 8 7 5 23 23 C 1.53124 * 109.16142 * 302.34511 * 5 4 2 24 24 C 1.53035 * 109.27745 * 57.65530 * 23 5 4 25 25 N 1.46846 * 109.45130 * 240.03331 * 2 1 3 26 26 H 1.09001 * 109.47152 * 300.01113 * 1 2 3 27 27 H 1.08994 * 109.47586 * 60.02138 * 1 2 3 28 28 H 1.09008 * 109.46918 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.50718 * 59.24672 * 4 2 1 30 30 H 1.09002 * 109.50146 * 299.12814 * 4 2 1 31 31 H 0.97005 * 119.99716 * 24.99188 * 7 5 4 32 32 H 1.08001 * 119.97206 * 0.04640 * 9 8 7 33 33 H 1.07999 * 119.92525 * 180.02562 * 10 9 8 34 34 H 1.07999 * 119.95974 * 180.27502 * 11 10 9 35 35 H 0.96997 * 119.99554 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.06953 * 0.02562 * 22 8 7 37 37 H 1.08996 * 109.50561 * 177.59835 * 23 5 4 38 38 H 1.09005 * 109.49704 * 297.71301 * 23 5 4 39 39 H 1.08997 * 109.45929 * 180.80935 * 24 23 5 40 40 H 1.08990 * 109.46365 * 60.83860 * 24 23 5 41 41 H 1.00901 * 111.00328 * 54.14776 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7211 1.2498 5 6 3.5710 -0.7363 1.2352 6 1 3.9458 0.2867 1.2681 7 7 4.0644 -1.4761 2.3996 8 6 5.3385 -1.2113 2.9067 9 6 6.1395 -0.2464 2.3069 10 6 7.4001 0.0155 2.8078 11 6 7.8665 -0.6763 3.9092 12 6 7.0733 -1.6457 4.5097 13 8 7.5348 -2.3287 5.5883 14 6 6.7617 -3.3296 6.0556 15 1 5.7860 -3.5038 5.6266 16 6 7.2193 -4.1354 7.0871 17 7 6.4652 -5.1123 7.5428 18 14 8.9072 -3.8346 7.8286 19 1 9.9211 -4.6298 7.0903 20 1 8.9008 -4.2438 9.2561 21 1 9.2417 -2.3912 7.7289 22 6 5.8064 -1.9111 4.0097 23 6 4.0546 -1.4190 -0.0472 24 6 3.4863 -0.6777 -1.2594 25 7 2.0190 -0.6916 -1.1995 26 1 -0.3633 0.5140 0.8899 27 1 -0.3634 0.5135 -0.8901 28 1 -0.3633 -1.0278 0.0005 29 1 1.6659 -1.7448 1.2574 30 1 1.6896 -0.1984 2.1398 31 1 3.5060 -2.1497 2.8184 32 1 5.7759 0.2993 1.4488 33 1 8.0203 0.7659 2.3403 34 1 8.8507 -0.4660 4.3011 35 1 6.7852 -5.6757 8.2646 36 1 5.1863 -2.6616 4.4773 37 1 5.1437 -1.3950 -0.0838 38 1 3.7122 -2.4538 -0.0599 39 1 3.8171 -1.1699 -2.1739 40 1 3.8402 0.3531 -1.2535 41 1 1.6192 -0.2923 -2.0355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692185881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:18 Heat of formation + Delta-G solvation = -4.683810 kcal Electronic energy + Delta-G solvation = -21090.372173 eV Core-core repulsion = 17970.269388 eV Total energy + Delta-G solvation = -3120.102785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.62401 -38.79061 -36.91925 -34.69331 -32.49130 -32.29178 -31.10646 -28.99908 -27.87390 -27.00732 -25.13397 -23.39117 -22.03657 -21.68622 -20.37256 -19.82125 -17.81117 -17.45578 -16.62327 -15.78115 -15.35505 -15.22174 -14.86323 -14.34474 -14.16763 -13.82637 -13.74564 -13.63499 -13.35547 -12.92190 -12.49485 -12.27682 -12.19114 -12.09531 -12.01595 -11.81092 -11.44611 -11.21197 -10.95990 -10.80914 -10.66998 -10.60961 -10.47596 -10.15776 -9.40309 -9.37728 -8.77951 -8.69931 -7.43984 -6.80948 -6.35762 -4.02426 2.32402 2.49483 3.26180 3.29869 3.45136 3.71758 3.90128 4.29200 4.56993 4.63860 4.73160 4.82751 4.97160 5.01361 5.10497 5.18004 5.27061 5.30548 5.36504 5.49570 5.57791 5.62301 5.68121 5.80467 5.86916 5.93690 5.97889 6.07239 6.17223 6.27219 6.36509 6.54741 6.62009 6.81054 7.00215 7.12635 7.25754 7.30845 7.56430 7.85096 7.96608 8.10009 8.23714 9.00433 9.65208 10.72206 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.003683 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.369892 B = 7600.346310 C = 8206.423648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.088 3.912 3 H 0.038 0.962 4 C -0.120 4.120 5 C 0.158 3.842 6 H 0.073 0.927 7 N -0.747 5.747 8 C 0.251 3.749 9 C -0.274 4.274 10 C -0.041 4.041 11 C -0.239 4.239 12 C 0.196 3.804 13 O -0.218 6.218 14 C -0.386 4.386 15 H 0.105 0.895 16 C 0.062 3.938 17 N -0.883 5.883 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.259 1.259 22 C -0.291 4.291 23 C -0.134 4.134 24 C 0.061 3.939 25 N -0.687 5.687 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.396 0.604 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.278 0.722 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 10.428 -15.882 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 H 0.056 0.944 4 C -0.158 4.158 5 C 0.051 3.949 6 H 0.091 0.909 7 N -0.377 5.377 8 C 0.149 3.851 9 C -0.297 4.297 10 C -0.060 4.060 11 C -0.260 4.260 12 C 0.143 3.857 13 O -0.123 6.123 14 C -0.462 4.462 15 H 0.123 0.877 16 C -0.141 4.141 17 N -0.521 5.521 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.315 4.315 23 C -0.173 4.173 24 C -0.069 4.069 25 N -0.319 5.319 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.230 0.770 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.261 9.765 -15.419 20.033 hybrid contribution 0.497 0.539 0.266 0.780 sum -7.764 10.303 -15.153 19.901 Atomic orbital electron populations 1.21821 0.94146 1.02728 1.01663 1.21402 0.95224 0.95087 0.90530 0.94382 1.21906 0.94788 1.02066 0.97060 1.20788 0.92998 0.95700 0.85382 0.90921 1.44626 1.15518 1.44455 1.33126 1.17490 0.84244 0.92185 0.91132 1.20148 0.97014 1.06256 1.06259 1.20368 0.94505 0.96839 0.94285 1.20015 1.01185 1.03354 1.01402 1.18798 0.91070 0.90254 0.85540 1.83581 1.46674 1.43303 1.38767 1.20759 1.00556 1.06719 1.18160 0.87732 1.24461 0.99298 0.94323 0.95984 1.69650 1.37468 1.17707 1.27317 0.86189 0.82891 0.79983 0.77886 1.19941 1.20899 1.18339 1.20621 0.99051 1.09264 1.02571 1.22123 1.00862 1.00655 0.93656 1.21886 0.87293 0.98628 0.99047 1.60342 1.07456 1.59465 1.04630 0.91987 0.92782 0.91632 0.90629 0.91016 0.76981 0.87728 0.87134 0.86991 0.91183 0.85218 0.90896 0.90951 0.90662 0.95236 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.43 37.16 0.35 -0.72 16 2 C 0.09 0.77 3.04 -67.72 -0.21 0.57 16 3 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 4 C -0.12 -1.25 4.85 -26.65 -0.13 -1.38 16 5 C 0.16 1.93 2.21 -67.80 -0.15 1.78 16 6 H 0.07 0.93 6.48 -51.93 -0.34 0.59 16 7 N -0.75 -11.36 5.25 -52.06 -0.27 -11.63 16 8 C 0.25 4.68 6.64 -83.81 -0.56 4.13 16 9 C -0.27 -4.76 8.90 -39.33 -0.35 -5.11 16 10 C -0.04 -0.73 10.03 -39.64 -0.40 -1.12 16 11 C -0.24 -4.94 9.99 -39.36 -0.39 -5.33 16 12 C 0.20 4.69 6.64 -39.14 -0.26 4.43 16 13 O -0.22 -5.93 8.58 0.05 0.00 -5.92 16 14 C -0.39 -11.11 9.94 30.89 0.31 -10.80 16 15 H 0.11 3.08 5.43 -52.49 -0.29 2.79 16 16 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 17 N -0.88 -25.89 13.96 55.48 0.77 -25.11 16 18 Si 0.90 22.08 28.62 -169.99 -4.86 17.22 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.26 -6.36 7.11 56.52 0.40 -5.95 16 22 C -0.29 -6.48 9.01 -39.20 -0.35 -6.83 16 23 C -0.13 -1.55 5.63 -26.65 -0.15 -1.70 16 24 C 0.06 0.57 6.55 -3.83 -0.03 0.54 16 25 N -0.69 -6.04 6.50 -106.76 -0.69 -6.73 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.40 5.84 8.62 -40.82 -0.35 5.48 16 32 H 0.10 1.58 6.10 -52.49 -0.32 1.26 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.13 3.04 5.64 -52.49 -0.30 2.75 16 37 H 0.07 0.93 7.74 -51.93 -0.40 0.53 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.34 2.38 8.79 -39.29 -0.35 2.04 16 LS Contribution 329.10 15.07 4.96 4.96 Total: -1.00 -30.07 329.10 -8.63 -38.70 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.12 Total: 8.40 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.41 Total: -19.88 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.19 Total: -43.48 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: 0.00 Total: -5.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.22 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.07 -8.63 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692185881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.018 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds