Wall clock time and date at job start Thu Apr 9 2020 14:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.45732 * 2 1 4 4 C 1.53033 * 109.46331 * 119.98268 * 2 1 3 5 5 C 1.53119 * 109.27571 * 179.18782 * 4 2 1 6 6 H 1.09002 * 109.52368 * 62.31398 * 5 4 2 7 7 N 1.46502 * 109.52564 * 182.44113 * 5 4 2 8 8 C 1.39668 * 120.00469 * 205.00088 * 7 5 4 9 9 C 1.39004 * 120.03812 * 359.97291 * 8 7 5 10 10 C 1.38153 * 120.06281 * 180.02562 * 9 8 7 11 11 C 1.38175 * 120.13969 * 359.72656 * 10 9 8 12 12 C 1.38912 * 120.07851 * 0.54850 * 11 10 9 13 13 O 1.35750 * 120.02810 * 179.71999 * 12 11 10 14 14 C 1.34830 * 116.99737 * 185.26713 * 13 12 11 15 15 H 1.07999 * 120.00483 * 354.94685 * 14 13 12 16 16 C 1.38659 * 120.00085 * 174.94382 * 14 13 12 17 17 N 1.31559 * 120.00105 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99735 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47075 * 270.00088 * 18 16 14 20 20 H 1.48497 * 109.47251 * 149.99835 * 18 16 14 21 21 H 1.48503 * 109.47287 * 29.99879 * 18 16 14 22 22 C 1.38752 * 120.04174 * 179.97438 * 8 7 5 23 23 C 1.53124 * 109.16142 * 302.34511 * 5 4 2 24 24 C 1.53035 * 109.27745 * 57.65530 * 23 5 4 25 25 N 1.46846 * 109.45130 * 240.03331 * 2 1 3 26 26 H 1.09001 * 109.47152 * 300.01113 * 1 2 3 27 27 H 1.08994 * 109.47586 * 60.02138 * 1 2 3 28 28 H 1.09008 * 109.46918 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.50718 * 59.24672 * 4 2 1 30 30 H 1.09002 * 109.50146 * 299.12814 * 4 2 1 31 31 H 0.97005 * 119.99716 * 24.99188 * 7 5 4 32 32 H 1.08001 * 119.97206 * 0.04640 * 9 8 7 33 33 H 1.07999 * 119.92525 * 180.02562 * 10 9 8 34 34 H 1.07999 * 119.95974 * 180.27502 * 11 10 9 35 35 H 0.96997 * 119.99554 * 180.02562 * 17 16 14 36 36 H 1.07999 * 120.06953 * 0.02562 * 22 8 7 37 37 H 1.08996 * 109.50561 * 177.59835 * 23 5 4 38 38 H 1.09005 * 109.49704 * 297.71301 * 23 5 4 39 39 H 1.08997 * 109.45929 * 180.80935 * 24 23 5 40 40 H 1.08990 * 109.46365 * 60.83860 * 24 23 5 41 41 H 1.00901 * 111.00328 * 54.14776 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7211 1.2498 5 6 3.5710 -0.7363 1.2352 6 1 3.9458 0.2867 1.2681 7 7 4.0644 -1.4761 2.3996 8 6 5.3385 -1.2113 2.9067 9 6 6.1395 -0.2464 2.3069 10 6 7.4001 0.0155 2.8078 11 6 7.8665 -0.6763 3.9092 12 6 7.0733 -1.6457 4.5097 13 8 7.5348 -2.3287 5.5883 14 6 6.7617 -3.3296 6.0556 15 1 5.7860 -3.5038 5.6266 16 6 7.2193 -4.1354 7.0871 17 7 6.4652 -5.1123 7.5428 18 14 8.9072 -3.8346 7.8286 19 1 9.9211 -4.6298 7.0903 20 1 8.9008 -4.2438 9.2561 21 1 9.2417 -2.3912 7.7289 22 6 5.8064 -1.9111 4.0097 23 6 4.0546 -1.4190 -0.0472 24 6 3.4863 -0.6777 -1.2594 25 7 2.0190 -0.6916 -1.1995 26 1 -0.3633 0.5140 0.8899 27 1 -0.3634 0.5135 -0.8901 28 1 -0.3633 -1.0278 0.0005 29 1 1.6659 -1.7448 1.2574 30 1 1.6896 -0.1984 2.1398 31 1 3.5060 -2.1497 2.8184 32 1 5.7759 0.2993 1.4488 33 1 8.0203 0.7659 2.3403 34 1 8.8507 -0.4660 4.3011 35 1 6.7852 -5.6757 8.2646 36 1 5.1863 -2.6616 4.4773 37 1 5.1437 -1.3950 -0.0838 38 1 3.7122 -2.4538 -0.0599 39 1 3.8171 -1.1699 -2.1739 40 1 3.8402 0.3531 -1.2535 41 1 1.6192 -0.2923 -2.0355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692185881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:17 Heat of formation + Delta-G solvation = -25.032667 kcal Electronic energy + Delta-G solvation = -21091.254566 eV Core-core repulsion = 17970.269388 eV Total energy + Delta-G solvation = -3120.985177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01128 -40.08817 -38.45549 -35.97964 -34.39501 -33.25718 -32.28685 -30.63670 -29.20022 -27.86487 -27.11209 -24.39470 -23.37252 -22.94504 -21.68865 -20.83686 -19.75394 -19.10577 -17.51443 -17.16207 -16.89213 -16.28142 -16.04432 -15.87813 -15.69509 -15.37702 -15.01746 -14.83448 -14.53492 -14.36984 -14.10738 -13.82199 -13.43569 -13.23129 -12.91452 -12.78793 -12.74651 -12.57146 -12.38444 -12.08603 -11.98415 -11.86026 -11.73175 -11.52382 -11.33156 -10.96629 -10.63559 -9.37513 -9.18971 -8.48875 -8.26453 -6.21450 0.72835 0.87454 1.31443 1.36516 1.52953 2.29247 2.47576 2.82182 3.14145 3.22311 3.25233 3.72591 3.90878 3.97355 4.14916 4.22040 4.33389 4.37393 4.45578 4.51865 4.56029 4.59290 4.71092 4.80811 4.86744 4.91471 4.95449 5.00969 5.04842 5.13356 5.18966 5.29771 5.39662 5.44565 5.46437 5.74542 5.84214 5.90170 6.10152 6.17502 6.53983 6.59020 6.80607 6.86119 7.62971 8.62999 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.003683 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.369892 B = 7600.346310 C = 8206.423648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.045 0.955 4 C -0.116 4.116 5 C 0.155 3.845 6 H 0.078 0.922 7 N -0.743 5.743 8 C 0.254 3.746 9 C -0.258 4.258 10 C -0.026 4.026 11 C -0.251 4.251 12 C 0.160 3.840 13 O -0.245 6.245 14 C -0.397 4.397 15 H 0.078 0.922 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.263 1.263 22 C -0.314 4.314 23 C -0.130 4.130 24 C 0.066 3.934 25 N -0.693 5.693 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.395 0.605 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.284 0.716 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.094 12.994 -18.335 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 H 0.063 0.937 4 C -0.155 4.155 5 C 0.050 3.950 6 H 0.096 0.904 7 N -0.371 5.371 8 C 0.150 3.850 9 C -0.281 4.281 10 C -0.044 4.044 11 C -0.272 4.272 12 C 0.110 3.890 13 O -0.152 6.152 14 C -0.473 4.473 15 H 0.095 0.905 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.794 3.206 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.187 1.187 22 C -0.338 4.338 23 C -0.169 4.169 24 C -0.063 4.063 25 N -0.327 5.327 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.229 0.771 32 H 0.157 0.843 33 H 0.176 0.824 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.006 12.356 -17.935 23.204 hybrid contribution 0.230 -0.111 0.745 0.788 sum -7.777 12.246 -17.190 22.493 Atomic orbital electron populations 1.21787 0.93029 1.02505 1.02655 1.21380 0.96074 0.94923 0.89556 0.93714 1.21883 0.93294 1.01929 0.98360 1.21025 0.94274 0.95361 0.84303 0.90411 1.44849 1.14285 1.44286 1.33637 1.17599 0.85645 0.91740 0.89977 1.20600 0.96479 1.04743 1.06234 1.20887 0.94774 0.96281 0.92494 1.20312 1.01495 1.02986 1.02384 1.19394 0.92406 0.91395 0.85830 1.83521 1.46861 1.43894 1.40940 1.20692 1.00118 1.07858 1.18680 0.90487 1.25294 1.03220 0.94052 0.96359 1.69735 1.39411 1.18999 1.28494 0.85203 0.78109 0.79515 0.77788 1.19061 1.19136 1.18713 1.20580 0.98865 1.09973 1.04367 1.22052 1.00332 1.00097 0.94415 1.21825 0.87548 0.98887 0.98070 1.60289 1.07253 1.59933 1.05271 0.91558 0.91285 0.92456 0.91539 0.90952 0.77088 0.84259 0.82444 0.86008 0.90641 0.88031 0.91785 0.92541 0.89581 0.94134 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.43 71.98 0.68 -1.06 16 2 C 0.09 1.35 3.04 44.94 0.14 1.49 16 3 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 4 C -0.12 -2.22 4.85 30.65 0.15 -2.08 16 5 C 0.16 3.49 2.21 45.07 0.10 3.59 16 6 H 0.08 1.71 6.48 -2.39 -0.02 1.69 16 7 N -0.74 -22.20 5.25 -318.62 -1.67 -23.87 16 8 C 0.25 9.34 6.64 38.20 0.25 9.59 16 9 C -0.26 -8.12 8.90 22.43 0.20 -7.92 16 10 C -0.03 -0.82 10.03 22.23 0.22 -0.60 16 11 C -0.25 -10.11 9.99 22.42 0.22 -9.88 16 12 C 0.16 7.87 6.64 22.56 0.15 8.02 16 13 O -0.24 -13.88 8.58 -22.74 -0.20 -14.08 16 14 C -0.40 -24.26 9.94 67.92 0.68 -23.58 16 15 H 0.08 4.96 5.43 -2.91 -0.02 4.94 16 16 C 0.01 0.52 5.49 84.83 0.47 0.98 16 17 N -0.93 -56.59 13.96 21.62 0.30 -56.29 16 18 Si 0.97 46.70 28.62 68.60 1.96 48.66 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 22 C -0.31 -14.58 9.01 22.52 0.20 -14.38 16 23 C -0.13 -2.74 5.63 30.65 0.17 -2.57 16 24 C 0.07 1.03 6.55 86.32 0.57 1.59 16 25 N -0.69 -10.19 6.50 -491.69 -3.20 -13.39 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.40 11.97 8.62 -92.70 -0.80 11.18 16 32 H 0.14 3.48 6.10 -2.91 -0.02 3.47 16 33 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 34 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.10 5.22 5.64 -2.91 -0.02 5.21 16 37 H 0.06 1.47 7.74 -2.39 -0.02 1.45 16 38 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 40 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.35 3.77 8.79 -89.69 -0.79 2.99 16 Total: -1.00 -68.58 329.10 0.85 -67.73 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.54 Total: 28.06 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 4.20 Total: -36.82 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -4.57 Total: -93.55 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.20 Total: -14.08 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.96 Total: 48.66 kcal Total: -68.58 0.85 -67.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692185881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.699 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds