Wall clock time and date at job start Thu Apr 9 2020 14:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46775 * 2 1 4 4 C 1.53036 * 109.46395 * 240.01764 * 2 1 3 5 5 C 1.53113 * 109.28084 * 180.80641 * 4 2 1 6 6 H 1.08999 * 109.52878 * 297.75429 * 5 4 2 7 7 N 1.46504 * 109.57842 * 177.59514 * 5 4 2 8 8 C 1.39669 * 120.00427 * 155.28712 * 7 5 4 9 9 C 1.39000 * 120.03766 * 359.72395 * 8 7 5 10 10 C 1.38157 * 120.06377 * 179.76864 * 9 8 7 11 11 C 1.38172 * 120.13572 * 0.50895 * 10 9 8 12 12 C 1.38924 * 120.08339 * 359.74304 * 11 10 9 13 13 O 1.35752 * 120.02931 * 180.02562 * 12 11 10 14 14 C 1.34826 * 116.99505 * 174.44484 * 13 12 11 15 15 H 1.08006 * 120.00425 * 5.05427 * 14 13 12 16 16 C 1.38657 * 119.99857 * 185.05680 * 14 13 12 17 17 N 1.31553 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99831 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47327 * 60.00206 * 18 16 14 20 20 H 1.48502 * 109.47155 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47360 * 299.99639 * 18 16 14 22 22 C 1.38748 * 120.03851 * 180.02562 * 8 7 5 23 23 C 1.53121 * 109.16002 * 57.65975 * 5 4 2 24 24 C 1.53037 * 109.27790 * 302.34238 * 23 5 4 25 25 N 1.46847 * 109.52073 * 59.17838 * 24 23 5 26 26 H 1.08992 * 109.47236 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46706 * 299.98159 * 1 2 3 28 28 H 1.09004 * 109.46636 * 59.97689 * 1 2 3 29 29 H 1.09002 * 109.50122 * 60.86732 * 4 2 1 30 30 H 1.08998 * 109.53985 * 300.77131 * 4 2 1 31 31 H 0.97006 * 119.99477 * 335.28564 * 7 5 4 32 32 H 1.07999 * 119.97151 * 0.02562 * 9 8 7 33 33 H 1.07996 * 119.93390 * 180.23367 * 10 9 8 34 34 H 1.07997 * 119.95794 * 179.76905 * 11 10 9 35 35 H 0.96999 * 120.00479 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.07777 * 359.95121 * 22 8 7 37 37 H 1.09002 * 109.50319 * 182.40562 * 23 5 4 38 38 H 1.09001 * 109.53790 * 62.30485 * 23 5 4 39 39 H 1.09001 * 109.46492 * 179.19408 * 24 23 5 40 40 H 1.08998 * 109.46225 * 299.16954 * 24 23 5 41 41 H 1.00905 * 110.99947 * 62.35793 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2498 5 6 3.5709 -0.7363 -1.2355 6 1 3.9457 0.2867 -1.2671 7 7 4.0655 -1.4751 -2.3999 8 6 5.3422 -1.2136 -2.9023 9 6 6.1420 -0.2484 -2.3016 10 6 7.4068 0.0073 -2.7952 11 6 7.8765 -0.6875 -3.8933 12 6 7.0801 -1.6497 -4.5014 13 8 7.5429 -2.3320 -5.5799 14 6 6.7684 -3.3300 -6.0511 15 1 5.7910 -3.5023 -5.6251 16 6 7.2269 -4.1353 -7.0826 17 7 8.4172 -3.9252 -7.6018 18 14 6.1542 -5.5184 -7.7350 19 1 4.8834 -4.9550 -8.2574 20 1 6.8683 -6.2249 -8.8287 21 1 5.8579 -6.4746 -6.6381 22 6 5.8110 -1.9124 -4.0054 23 6 4.0547 -1.4190 0.0469 24 6 3.4865 -0.6777 1.2592 25 7 2.0193 -0.6917 1.1995 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5136 0.8902 28 1 -0.3633 0.5142 -0.8898 29 1 1.6895 -0.1984 -2.1399 30 1 1.6659 -1.7448 -1.2582 31 1 3.5062 -2.1459 -2.8219 32 1 5.7761 0.2992 -1.4457 33 1 8.0279 0.7550 -2.3246 34 1 8.8643 -0.4826 -4.2790 35 1 8.7378 -4.4883 -8.3236 36 1 5.1901 -2.6600 -4.4765 37 1 5.1438 -1.3949 0.0834 38 1 3.7129 -2.4539 0.0601 39 1 3.8174 -1.1699 2.1738 40 1 3.8403 0.3532 1.2532 41 1 1.6646 -1.6353 1.2427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692185883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:20 Heat of formation + Delta-G solvation = -8.416260 kcal Electronic energy + Delta-G solvation = -21106.351629 eV Core-core repulsion = 17986.086993 eV Total energy + Delta-G solvation = -3120.264636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.73359 -38.74312 -36.80130 -34.59743 -32.54227 -32.19432 -30.88934 -28.76183 -27.74740 -27.04608 -25.22921 -23.35923 -21.92918 -21.75509 -20.76974 -20.13177 -17.84864 -17.39116 -16.08019 -15.44419 -15.39831 -15.17854 -14.88146 -14.44000 -14.29325 -14.00115 -13.63455 -13.56786 -13.24118 -12.84661 -12.65584 -12.32080 -12.26820 -12.06645 -11.76856 -11.62965 -11.58209 -11.19707 -11.05438 -10.80035 -10.78042 -10.68465 -10.52889 -10.37661 -9.40486 -9.36740 -8.74859 -8.64593 -7.34890 -6.76363 -6.40238 -3.99602 2.39139 2.57812 3.14007 3.15717 3.17996 3.66117 3.99834 4.02955 4.50620 4.63759 4.74715 4.79643 5.01683 5.08660 5.14349 5.16403 5.25393 5.34731 5.39218 5.49652 5.59816 5.63299 5.73452 5.80737 5.82127 5.91020 5.97601 6.00258 6.14775 6.29382 6.38672 6.66147 6.66680 6.80106 7.04891 7.12830 7.16130 7.40167 7.50010 7.68217 8.03106 8.05913 8.21289 9.05719 9.78559 10.78123 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.003907 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.132096 B = 7165.506101 C = 8040.528958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.082 0.918 4 C -0.159 4.159 5 C 0.160 3.840 6 H 0.077 0.923 7 N -0.750 5.750 8 C 0.250 3.750 9 C -0.280 4.280 10 C -0.040 4.040 11 C -0.237 4.237 12 C 0.190 3.810 13 O -0.178 6.178 14 C -0.390 4.390 15 H 0.090 0.910 16 C 0.039 3.961 17 N -0.865 5.865 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.303 4.303 23 C -0.173 4.173 24 C 0.059 3.941 25 N -0.683 5.683 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.392 0.608 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.270 0.730 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.957 5.692 14.635 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.100 0.900 4 C -0.199 4.199 5 C 0.053 3.947 6 H 0.095 0.905 7 N -0.380 5.380 8 C 0.149 3.851 9 C -0.303 4.303 10 C -0.059 4.059 11 C -0.258 4.258 12 C 0.135 3.865 13 O -0.081 6.081 14 C -0.466 4.466 15 H 0.107 0.893 16 C -0.165 4.165 17 N -0.500 5.500 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.327 4.327 23 C -0.214 4.214 24 C -0.071 4.071 25 N -0.312 5.312 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.226 0.774 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.689 6.290 14.857 20.526 hybrid contribution -0.510 -1.747 -1.266 2.217 sum -13.198 4.544 13.591 19.482 Atomic orbital electron populations 1.21794 0.94167 1.02036 1.02179 1.21529 0.95298 0.98402 0.87172 0.89960 1.22600 0.95437 1.01722 1.00160 1.20739 0.92578 0.96083 0.85258 0.90469 1.44623 1.15363 1.44804 1.33233 1.17463 0.84051 0.92332 0.91243 1.20087 0.97065 1.06541 1.06594 1.20381 0.94429 0.96741 0.94358 1.20040 1.01122 1.03410 1.01186 1.19071 0.90877 0.90414 0.86116 1.83986 1.45143 1.42060 1.36945 1.21245 0.99426 1.08101 1.17850 0.89302 1.25262 0.96651 0.98329 0.96276 1.70027 1.17019 1.38385 1.24577 0.85813 0.79130 0.79968 0.78670 1.19618 1.20281 1.19620 1.20503 0.99212 1.09906 1.03061 1.22810 1.02624 1.00131 0.95856 1.22002 0.87024 1.00946 0.97116 1.60741 1.08950 1.22344 1.39122 0.92775 0.91764 0.92073 0.90837 0.91661 0.77381 0.87861 0.87237 0.86935 0.92056 0.85915 0.90612 0.91978 0.90584 0.90833 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.47 37.16 0.35 -0.68 16 2 C 0.09 0.73 3.03 -67.72 -0.21 0.52 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.16 -1.52 4.83 -26.65 -0.13 -1.65 16 5 C 0.16 1.88 2.21 -67.81 -0.15 1.73 16 6 H 0.08 0.98 6.48 -51.93 -0.34 0.64 16 7 N -0.75 -11.16 5.26 -52.07 -0.27 -11.43 16 8 C 0.25 4.71 6.63 -83.82 -0.56 4.16 16 9 C -0.28 -5.02 8.88 -39.33 -0.35 -5.37 16 10 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 11 C -0.24 -5.24 9.99 -39.35 -0.39 -5.63 16 12 C 0.19 4.75 6.64 -39.13 -0.26 4.49 16 13 O -0.18 -5.23 9.76 0.05 0.00 -5.22 16 14 C -0.39 -11.13 9.49 30.89 0.29 -10.83 16 15 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 18 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.30 -6.79 9.01 -39.20 -0.35 -7.14 16 23 C -0.17 -1.89 5.61 -26.65 -0.15 -2.04 16 24 C 0.06 0.53 6.55 -3.83 -0.03 0.51 16 25 N -0.68 -5.85 6.50 -106.76 -0.69 -6.55 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.39 5.54 8.62 -40.82 -0.35 5.19 16 32 H 0.10 1.60 6.09 -52.49 -0.32 1.28 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.11 2.42 8.06 -52.49 -0.42 1.99 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 2.77 5.64 -52.49 -0.30 2.47 16 37 H 0.08 0.95 7.72 -51.93 -0.40 0.55 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.34 2.69 8.79 -39.29 -0.35 2.34 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -30.85 330.17 -8.78 -39.63 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.11 Total: 9.92 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -2.42 Total: -22.09 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.21 Total: -43.01 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.22 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.85 -8.78 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692185883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.217 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds