Wall clock time and date at job start Thu Apr 9 2020 14:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.46775 * 2 1 4 4 C 1.53036 * 109.46395 * 240.01764 * 2 1 3 5 5 C 1.53113 * 109.28084 * 180.80641 * 4 2 1 6 6 H 1.08999 * 109.52878 * 297.75429 * 5 4 2 7 7 N 1.46504 * 109.57842 * 177.59514 * 5 4 2 8 8 C 1.39669 * 120.00427 * 155.28712 * 7 5 4 9 9 C 1.39000 * 120.03766 * 359.72395 * 8 7 5 10 10 C 1.38157 * 120.06377 * 179.76864 * 9 8 7 11 11 C 1.38172 * 120.13572 * 0.50895 * 10 9 8 12 12 C 1.38924 * 120.08339 * 359.74304 * 11 10 9 13 13 O 1.35752 * 120.02931 * 180.02562 * 12 11 10 14 14 C 1.34826 * 116.99505 * 174.44484 * 13 12 11 15 15 H 1.08006 * 120.00425 * 5.05427 * 14 13 12 16 16 C 1.38657 * 119.99857 * 185.05680 * 14 13 12 17 17 N 1.31553 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99831 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47327 * 60.00206 * 18 16 14 20 20 H 1.48502 * 109.47155 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47360 * 299.99639 * 18 16 14 22 22 C 1.38748 * 120.03851 * 180.02562 * 8 7 5 23 23 C 1.53121 * 109.16002 * 57.65975 * 5 4 2 24 24 C 1.53037 * 109.27790 * 302.34238 * 23 5 4 25 25 N 1.46847 * 109.52073 * 59.17838 * 24 23 5 26 26 H 1.08992 * 109.47236 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46706 * 299.98159 * 1 2 3 28 28 H 1.09004 * 109.46636 * 59.97689 * 1 2 3 29 29 H 1.09002 * 109.50122 * 60.86732 * 4 2 1 30 30 H 1.08998 * 109.53985 * 300.77131 * 4 2 1 31 31 H 0.97006 * 119.99477 * 335.28564 * 7 5 4 32 32 H 1.07999 * 119.97151 * 0.02562 * 9 8 7 33 33 H 1.07996 * 119.93390 * 180.23367 * 10 9 8 34 34 H 1.07997 * 119.95794 * 179.76905 * 11 10 9 35 35 H 0.96999 * 120.00479 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.07777 * 359.95121 * 22 8 7 37 37 H 1.09002 * 109.50319 * 182.40562 * 23 5 4 38 38 H 1.09001 * 109.53790 * 62.30485 * 23 5 4 39 39 H 1.09001 * 109.46492 * 179.19408 * 24 23 5 40 40 H 1.08998 * 109.46225 * 299.16954 * 24 23 5 41 41 H 1.00905 * 110.99947 * 62.35793 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2498 5 6 3.5709 -0.7363 -1.2355 6 1 3.9457 0.2867 -1.2671 7 7 4.0655 -1.4751 -2.3999 8 6 5.3422 -1.2136 -2.9023 9 6 6.1420 -0.2484 -2.3016 10 6 7.4068 0.0073 -2.7952 11 6 7.8765 -0.6875 -3.8933 12 6 7.0801 -1.6497 -4.5014 13 8 7.5429 -2.3320 -5.5799 14 6 6.7684 -3.3300 -6.0511 15 1 5.7910 -3.5023 -5.6251 16 6 7.2269 -4.1353 -7.0826 17 7 8.4172 -3.9252 -7.6018 18 14 6.1542 -5.5184 -7.7350 19 1 4.8834 -4.9550 -8.2574 20 1 6.8683 -6.2249 -8.8287 21 1 5.8579 -6.4746 -6.6381 22 6 5.8110 -1.9124 -4.0054 23 6 4.0547 -1.4190 0.0469 24 6 3.4865 -0.6777 1.2592 25 7 2.0193 -0.6917 1.1995 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5136 0.8902 28 1 -0.3633 0.5142 -0.8898 29 1 1.6895 -0.1984 -2.1399 30 1 1.6659 -1.7448 -1.2582 31 1 3.5062 -2.1459 -2.8219 32 1 5.7761 0.2992 -1.4457 33 1 8.0279 0.7550 -2.3246 34 1 8.8643 -0.4826 -4.2790 35 1 8.7378 -4.4883 -8.3236 36 1 5.1901 -2.6600 -4.4765 37 1 5.1438 -1.3949 0.0834 38 1 3.7129 -2.4539 0.0601 39 1 3.8174 -1.1699 2.1738 40 1 3.8403 0.3532 1.2532 41 1 1.6646 -1.6353 1.2427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692185883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:19 Heat of formation + Delta-G solvation = -29.672332 kcal Electronic energy + Delta-G solvation = -21107.273362 eV Core-core repulsion = 17986.086993 eV Total energy + Delta-G solvation = -3121.186368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.98769 -40.15079 -38.40365 -35.92204 -34.22910 -33.28004 -32.09284 -30.43052 -29.05352 -27.88791 -27.21262 -24.32421 -23.38064 -22.92287 -21.78450 -21.37337 -19.71465 -19.04513 -17.38363 -16.88020 -16.55193 -16.20896 -16.08356 -15.91450 -15.55462 -15.42654 -15.27301 -14.73550 -14.46852 -14.34187 -13.92578 -13.53753 -13.39553 -13.28388 -12.95493 -12.76411 -12.59054 -12.55110 -12.45747 -12.19036 -12.03371 -11.87548 -11.74657 -11.54467 -11.30883 -10.91792 -10.60148 -9.37249 -9.12748 -8.46728 -8.25823 -6.15429 0.74148 0.89768 1.32555 1.44313 1.49316 2.17238 2.46102 2.87559 3.24352 3.33279 3.57455 3.67644 3.87458 4.03289 4.13483 4.21457 4.28212 4.38786 4.41340 4.52830 4.59944 4.61831 4.72389 4.79177 4.88190 4.93715 4.98291 5.07110 5.09705 5.13286 5.14492 5.21637 5.31240 5.36655 5.45432 5.73600 5.78603 6.02044 6.09551 6.11169 6.48332 6.58761 6.82981 6.98243 7.81426 8.76742 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.003907 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.132096 B = 7165.506101 C = 8040.528958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.091 3.909 3 H 0.081 0.919 4 C -0.151 4.151 5 C 0.155 3.845 6 H 0.076 0.924 7 N -0.741 5.741 8 C 0.258 3.742 9 C -0.264 4.264 10 C -0.026 4.026 11 C -0.262 4.262 12 C 0.153 3.847 13 O -0.232 6.232 14 C -0.413 4.413 15 H 0.098 0.902 16 C -0.023 4.023 17 N -0.922 5.922 18 Si 1.018 2.982 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.258 1.258 22 C -0.318 4.318 23 C -0.166 4.166 24 C 0.066 3.934 25 N -0.682 5.682 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.397 0.603 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.106 0.894 35 H 0.273 0.727 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.491 6.350 17.095 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 H 0.099 0.901 4 C -0.191 4.191 5 C 0.050 3.950 6 H 0.094 0.906 7 N -0.369 5.369 8 C 0.154 3.846 9 C -0.287 4.287 10 C -0.044 4.044 11 C -0.283 4.283 12 C 0.102 3.898 13 O -0.138 6.138 14 C -0.489 4.489 15 H 0.115 0.885 16 C -0.220 4.220 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.183 1.183 22 C -0.342 4.342 23 C -0.207 4.207 24 C -0.064 4.064 25 N -0.312 5.312 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.282 6.979 17.389 24.179 hybrid contribution 0.177 -1.741 -1.740 2.468 sum -15.105 5.238 15.649 22.371 Atomic orbital electron populations 1.21758 0.93057 1.02418 1.02552 1.21526 0.96122 0.98033 0.86333 0.90097 1.22548 0.93450 1.02204 1.00867 1.20991 0.94208 0.95506 0.84264 0.90595 1.44806 1.13803 1.44646 1.33679 1.17543 0.85618 0.91511 0.89936 1.20539 0.96313 1.05239 1.06563 1.20831 0.95020 0.96120 0.92474 1.20265 1.01130 1.04088 1.02825 1.19640 0.92568 0.91325 0.86275 1.83947 1.46707 1.43663 1.39506 1.21748 1.00037 1.08623 1.18510 0.88452 1.26589 0.98240 1.01047 0.96172 1.70179 1.19504 1.40402 1.25936 0.84661 0.77266 0.76114 0.78220 1.18189 1.19454 1.18280 1.20515 0.98493 1.10656 1.04545 1.22737 1.01634 1.00167 0.96163 1.21970 0.87153 1.00864 0.96446 1.60752 1.08596 1.22787 1.39036 0.92406 0.91568 0.91565 0.90969 0.91280 0.76915 0.84317 0.83040 0.87548 0.91836 0.86995 0.92108 0.92328 0.89590 0.90539 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.47 71.98 0.68 -0.89 16 2 C 0.09 1.23 3.03 44.94 0.14 1.37 16 3 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.15 -2.42 4.83 30.64 0.15 -2.27 16 5 C 0.16 3.19 2.21 45.07 0.10 3.29 16 6 H 0.08 1.63 6.48 -2.39 -0.02 1.61 16 7 N -0.74 -20.51 5.26 -318.65 -1.67 -22.18 16 8 C 0.26 9.35 6.63 38.20 0.25 9.61 16 9 C -0.26 -8.69 8.88 22.43 0.20 -8.49 16 10 C -0.03 -0.91 10.03 22.23 0.22 -0.69 16 11 C -0.26 -11.82 9.99 22.42 0.22 -11.60 16 12 C 0.15 8.02 6.64 22.56 0.15 8.17 16 13 O -0.23 -14.52 9.76 -22.72 -0.22 -14.74 16 14 C -0.41 -24.83 9.49 67.92 0.64 -24.19 16 15 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 16 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 17 N -0.92 -57.85 13.67 21.61 0.30 -57.55 16 18 Si 1.02 43.71 29.55 68.60 2.03 45.73 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 22 C -0.32 -14.56 9.01 22.52 0.20 -14.35 16 23 C -0.17 -3.13 5.61 30.65 0.17 -2.96 16 24 C 0.07 0.96 6.55 86.33 0.57 1.53 16 25 N -0.68 -9.45 6.50 -491.68 -3.20 -12.65 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.40 10.53 8.62 -92.70 -0.80 9.73 16 32 H 0.14 3.64 6.09 -2.91 -0.02 3.63 16 33 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 34 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 37 H 0.06 1.35 7.72 -2.39 -0.02 1.33 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.34 4.33 8.79 -89.69 -0.79 3.54 16 Total: -1.00 -71.50 330.17 0.85 -70.65 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.54 Total: 33.11 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 4.17 Total: -42.37 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -4.58 Total: -92.38 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.22 Total: -14.74 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.50 0.85 -70.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692185883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.973 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds