Wall clock time and date at job start Thu Apr 9 2020 14:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46772 * 2 1 4 4 C 1.53173 * 109.44038 * 119.93812 * 2 1 3 5 5 C 1.53127 * 109.20345 * 179.16551 * 4 2 1 6 6 H 1.09002 * 109.52137 * 182.44121 * 5 4 2 7 7 N 1.46492 * 109.52293 * 62.31136 * 5 4 2 8 8 C 1.39676 * 120.00114 * 155.12545 * 7 5 4 9 9 C 1.39006 * 120.03654 * 0.02562 * 8 7 5 10 10 C 1.38147 * 120.06376 * 179.97438 * 9 8 7 11 11 C 1.38179 * 120.14072 * 359.97438 * 10 9 8 12 12 C 1.38923 * 120.07685 * 359.97438 * 11 10 9 13 13 O 1.35747 * 120.02937 * 179.74798 * 12 11 10 14 14 C 1.34831 * 116.99930 * 174.45116 * 13 12 11 15 15 H 1.07994 * 119.99879 * 5.03588 * 14 13 12 16 16 C 1.38654 * 119.99785 * 185.04423 * 14 13 12 17 17 N 1.31556 * 119.99989 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99723 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47389 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46836 * 120.00316 * 18 16 14 21 21 H 1.48501 * 109.47389 * 239.99830 * 18 16 14 22 22 C 1.38746 * 120.03897 * 179.97438 * 8 7 5 23 23 C 1.53121 * 109.20979 * 302.37175 * 5 4 2 24 24 C 1.53034 * 109.28035 * 57.69214 * 23 5 4 25 25 N 1.46849 * 109.52133 * 300.81617 * 24 23 5 26 26 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47128 * 299.98122 * 1 2 3 28 28 H 1.08994 * 109.46734 * 59.97971 * 1 2 3 29 29 H 1.09000 * 109.49364 * 59.28249 * 4 2 1 30 30 H 1.08992 * 109.58886 * 299.10949 * 4 2 1 31 31 H 0.96995 * 119.99939 * 335.12491 * 7 5 4 32 32 H 1.08000 * 119.97269 * 359.97379 * 9 8 7 33 33 H 1.07997 * 119.93224 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.96366 * 179.97438 * 11 10 9 35 35 H 0.97006 * 119.99663 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.07211 * 0.04521 * 22 8 7 37 37 H 1.09009 * 109.49766 * 177.62972 * 23 5 4 38 38 H 1.09001 * 109.50649 * 297.74520 * 23 5 4 39 39 H 1.08997 * 109.46434 * 60.82810 * 24 23 5 40 40 H 1.09000 * 109.46343 * 180.80437 * 24 23 5 41 41 H 1.00904 * 111.00143 * 297.64747 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7209 1.2517 5 6 3.5709 -0.7360 1.2357 6 1 3.9388 -1.2856 2.1022 7 7 4.0745 0.6390 1.2781 8 6 5.3502 0.9003 1.7834 9 6 6.1428 -0.1439 2.2458 10 6 7.4048 0.1138 2.7451 11 6 7.8835 1.4094 2.7862 12 6 7.0968 2.4572 2.3247 13 8 7.5660 3.7302 2.3702 14 6 6.8018 4.6850 1.8025 15 1 5.8266 4.4346 1.4117 16 6 7.2679 5.9882 1.7203 17 7 8.4556 6.2933 2.1967 18 14 6.2094 7.3108 0.9330 19 1 4.9271 6.7142 0.4802 20 1 5.9340 8.3803 1.9258 21 1 6.9254 7.8896 -0.2321 22 6 5.8282 2.2022 1.8234 23 6 4.0547 -1.4189 -0.0465 24 6 3.4865 -0.6779 -1.2590 25 7 2.0193 -0.6919 -1.1993 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5135 0.8901 28 1 -0.3632 0.5141 -0.8898 29 1 1.6659 -1.7447 1.2594 30 1 1.6904 -0.1984 2.1421 31 1 3.5221 1.3680 0.9552 32 1 5.7717 -1.1577 2.2146 33 1 8.0186 -0.6990 3.1042 34 1 8.8703 1.6076 3.1776 35 1 8.7819 7.2050 2.1388 36 1 5.2145 3.0153 1.4647 37 1 5.1439 -1.3948 -0.0829 38 1 3.7124 -2.4537 -0.0592 39 1 3.8403 0.3530 -1.2532 40 1 3.8175 -1.1703 -2.1734 41 1 1.6646 -1.6356 -1.2424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692185884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:21 Heat of formation + Delta-G solvation = -5.541474 kcal Electronic energy + Delta-G solvation = -21447.076133 eV Core-core repulsion = 18326.936157 eV Total energy + Delta-G solvation = -3120.139976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89585 -38.70000 -36.66581 -34.35930 -32.45695 -32.17225 -30.96765 -28.75264 -27.71007 -27.04647 -25.22723 -23.57803 -21.85830 -21.60232 -21.24253 -19.49785 -17.78030 -17.38598 -16.06457 -15.67674 -15.29241 -15.08952 -14.81350 -14.41545 -14.18199 -14.02399 -13.64484 -13.44945 -13.22672 -12.89898 -12.59814 -12.32002 -12.23761 -12.08078 -11.64037 -11.61682 -11.46506 -11.13456 -11.04083 -10.90651 -10.74147 -10.65306 -10.49532 -10.35209 -9.41341 -9.34935 -8.74211 -8.48472 -7.33516 -6.75044 -6.39283 -3.98377 2.40138 2.58869 3.15327 3.16494 3.21628 3.75560 4.01255 4.06220 4.55350 4.67743 4.70811 4.82139 4.95773 5.11796 5.17686 5.24658 5.36116 5.38829 5.42712 5.52391 5.65818 5.69452 5.79044 5.80840 5.91463 5.96073 5.98782 6.06079 6.08891 6.30397 6.39673 6.67349 6.67897 6.89114 7.06204 7.18036 7.23366 7.41075 7.51254 7.69400 8.04343 8.07211 8.22274 9.07111 9.79896 10.79194 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.004807 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.297290 B = 5822.864219 C = 7019.854804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 H 0.081 0.919 4 C -0.159 4.159 5 C 0.158 3.842 6 H 0.077 0.923 7 N -0.746 5.746 8 C 0.251 3.749 9 C -0.280 4.280 10 C -0.040 4.040 11 C -0.237 4.237 12 C 0.190 3.810 13 O -0.179 6.179 14 C -0.388 4.388 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.939 3.061 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.276 1.276 22 C -0.302 4.302 23 C -0.173 4.173 24 C 0.060 3.940 25 N -0.681 5.681 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.392 0.608 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.022 -14.346 -4.003 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.099 0.901 4 C -0.199 4.199 5 C 0.052 3.948 6 H 0.095 0.905 7 N -0.378 5.378 8 C 0.150 3.850 9 C -0.303 4.303 10 C -0.059 4.059 11 C -0.258 4.258 12 C 0.135 3.865 13 O -0.082 6.082 14 C -0.464 4.464 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.500 5.500 18 Si 0.764 3.236 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.326 4.326 23 C -0.214 4.214 24 C -0.070 4.070 25 N -0.309 5.309 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.227 0.773 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.772 -13.655 -4.288 19.183 hybrid contribution -0.478 0.234 0.218 0.575 sum -13.251 -13.421 -4.070 19.294 Atomic orbital electron populations 1.21800 0.94324 1.01843 1.02222 1.21574 0.95160 0.98510 0.87632 0.90140 1.22589 0.95435 1.01725 1.00150 1.20721 0.92550 0.84332 0.97244 0.90521 1.44636 1.15560 1.06629 1.70970 1.17459 0.84064 0.92944 0.90552 1.20078 0.97208 0.96743 1.16258 1.20373 0.94428 0.95104 0.96039 1.20037 1.01198 0.91112 1.13433 1.19069 0.90838 0.85864 0.90684 1.83986 1.45538 1.11345 1.67353 1.21340 0.99875 0.87107 1.38124 0.89176 1.25266 0.96615 0.97408 0.97278 1.70053 1.16988 1.19925 1.43020 0.85677 0.79174 0.80024 0.78702 1.19225 1.20216 1.20183 1.20497 0.99139 0.95085 1.17876 1.22724 1.02686 0.98963 0.96993 1.21947 0.86678 1.01638 0.96716 1.60742 1.09129 1.21965 1.39098 0.92857 0.92124 0.91815 0.90998 0.90776 0.77273 0.87914 0.87319 0.86983 0.92189 0.85918 0.90548 0.91958 0.90397 0.91007 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.47 37.16 0.35 -0.81 16 2 C 0.08 0.77 2.87 -67.65 -0.19 0.58 16 3 H 0.08 0.89 6.64 -51.93 -0.34 0.55 16 4 C -0.16 -1.50 5.03 -26.58 -0.13 -1.63 16 5 C 0.16 1.83 2.49 -67.81 -0.17 1.66 16 6 H 0.08 0.94 6.48 -51.93 -0.34 0.61 16 7 N -0.75 -10.88 4.52 -52.06 -0.24 -11.11 16 8 C 0.25 4.66 6.64 -83.81 -0.56 4.10 16 9 C -0.28 -4.97 8.87 -39.33 -0.35 -5.32 16 10 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 11 C -0.24 -5.22 9.99 -39.35 -0.39 -5.61 16 12 C 0.19 4.73 6.64 -39.13 -0.26 4.47 16 13 O -0.18 -5.24 9.76 0.05 0.00 -5.24 16 14 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 15 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 18 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 C -0.30 -6.72 9.01 -39.20 -0.35 -7.07 16 23 C -0.17 -1.86 5.70 -26.65 -0.15 -2.01 16 24 C 0.06 0.64 6.41 -3.83 -0.02 0.62 16 25 N -0.68 -6.60 6.50 -106.69 -0.69 -7.29 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.39 5.58 7.02 -40.82 -0.29 5.29 16 32 H 0.10 1.58 6.18 -52.49 -0.32 1.25 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.12 2.77 5.64 -52.49 -0.30 2.47 16 37 H 0.08 0.96 7.80 -51.92 -0.40 0.56 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.34 2.77 8.79 -39.29 -0.35 2.42 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -30.59 326.31 -8.66 -39.25 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.95 Total: 10.56 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -2.43 Total: -21.96 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.17 Total: -43.41 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.59 -8.66 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692185884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.713 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds