Wall clock time and date at job start Thu Apr 9 2020 14:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46772 * 2 1 4 4 C 1.53173 * 109.44038 * 119.93812 * 2 1 3 5 5 C 1.53127 * 109.20345 * 179.16551 * 4 2 1 6 6 H 1.09002 * 109.52137 * 182.44121 * 5 4 2 7 7 N 1.46492 * 109.52293 * 62.31136 * 5 4 2 8 8 C 1.39676 * 120.00114 * 155.12545 * 7 5 4 9 9 C 1.39006 * 120.03654 * 0.02562 * 8 7 5 10 10 C 1.38147 * 120.06376 * 179.97438 * 9 8 7 11 11 C 1.38179 * 120.14072 * 359.97438 * 10 9 8 12 12 C 1.38923 * 120.07685 * 359.97438 * 11 10 9 13 13 O 1.35747 * 120.02937 * 179.74798 * 12 11 10 14 14 C 1.34831 * 116.99930 * 174.45116 * 13 12 11 15 15 H 1.07994 * 119.99879 * 5.03588 * 14 13 12 16 16 C 1.38654 * 119.99785 * 185.04423 * 14 13 12 17 17 N 1.31556 * 119.99989 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99723 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47389 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46836 * 120.00316 * 18 16 14 21 21 H 1.48501 * 109.47389 * 239.99830 * 18 16 14 22 22 C 1.38746 * 120.03897 * 179.97438 * 8 7 5 23 23 C 1.53121 * 109.20979 * 302.37175 * 5 4 2 24 24 C 1.53034 * 109.28035 * 57.69214 * 23 5 4 25 25 N 1.46849 * 109.52133 * 300.81617 * 24 23 5 26 26 H 1.09000 * 109.47434 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47128 * 299.98122 * 1 2 3 28 28 H 1.08994 * 109.46734 * 59.97971 * 1 2 3 29 29 H 1.09000 * 109.49364 * 59.28249 * 4 2 1 30 30 H 1.08992 * 109.58886 * 299.10949 * 4 2 1 31 31 H 0.96995 * 119.99939 * 335.12491 * 7 5 4 32 32 H 1.08000 * 119.97269 * 359.97379 * 9 8 7 33 33 H 1.07997 * 119.93224 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.96366 * 179.97438 * 11 10 9 35 35 H 0.97006 * 119.99663 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.07211 * 0.04521 * 22 8 7 37 37 H 1.09009 * 109.49766 * 177.62972 * 23 5 4 38 38 H 1.09001 * 109.50649 * 297.74520 * 23 5 4 39 39 H 1.08997 * 109.46434 * 60.82810 * 24 23 5 40 40 H 1.09000 * 109.46343 * 180.80437 * 24 23 5 41 41 H 1.00904 * 111.00143 * 297.64747 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7209 1.2517 5 6 3.5709 -0.7360 1.2357 6 1 3.9388 -1.2856 2.1022 7 7 4.0745 0.6390 1.2781 8 6 5.3502 0.9003 1.7834 9 6 6.1428 -0.1439 2.2458 10 6 7.4048 0.1138 2.7451 11 6 7.8835 1.4094 2.7862 12 6 7.0968 2.4572 2.3247 13 8 7.5660 3.7302 2.3702 14 6 6.8018 4.6850 1.8025 15 1 5.8266 4.4346 1.4117 16 6 7.2679 5.9882 1.7203 17 7 8.4556 6.2933 2.1967 18 14 6.2094 7.3108 0.9330 19 1 4.9271 6.7142 0.4802 20 1 5.9340 8.3803 1.9258 21 1 6.9254 7.8896 -0.2321 22 6 5.8282 2.2022 1.8234 23 6 4.0547 -1.4189 -0.0465 24 6 3.4865 -0.6779 -1.2590 25 7 2.0193 -0.6919 -1.1993 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5135 0.8901 28 1 -0.3632 0.5141 -0.8898 29 1 1.6659 -1.7447 1.2594 30 1 1.6904 -0.1984 2.1421 31 1 3.5221 1.3680 0.9552 32 1 5.7717 -1.1577 2.2146 33 1 8.0186 -0.6990 3.1042 34 1 8.8703 1.6076 3.1776 35 1 8.7819 7.2050 2.1388 36 1 5.2145 3.0153 1.4647 37 1 5.1439 -1.3948 -0.0829 38 1 3.7124 -2.4537 -0.0592 39 1 3.8403 0.3530 -1.2532 40 1 3.8175 -1.1703 -2.1734 41 1 1.6646 -1.6356 -1.2424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692185884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:21 Heat of formation + Delta-G solvation = -26.466031 kcal Electronic energy + Delta-G solvation = -21447.983490 eV Core-core repulsion = 18326.936157 eV Total energy + Delta-G solvation = -3121.047333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.08769 -40.22706 -38.29393 -35.65408 -34.20845 -33.26590 -32.15304 -30.41666 -29.06989 -27.89904 -27.21499 -24.55698 -23.24827 -22.90557 -22.39915 -20.72211 -19.61357 -18.99820 -17.40931 -16.89426 -16.58746 -16.30258 -16.00690 -15.93269 -15.53559 -15.45739 -15.16715 -14.67300 -14.50482 -14.27517 -13.93976 -13.56737 -13.44469 -13.20861 -12.95678 -12.80641 -12.64319 -12.50137 -12.43469 -12.13119 -11.97418 -11.88388 -11.73356 -11.59388 -11.29089 -10.94443 -10.60799 -9.28143 -9.10043 -8.46305 -8.22961 -6.14521 0.75916 0.91789 1.33099 1.42563 1.51347 2.17363 2.52558 2.88572 3.26033 3.30400 3.58743 3.76020 3.85588 3.93086 4.11819 4.20466 4.32817 4.39141 4.43812 4.56684 4.61565 4.68304 4.75466 4.82084 4.85880 4.93515 4.99295 5.07462 5.12325 5.13042 5.15866 5.19664 5.28574 5.35250 5.47651 5.75159 5.80241 6.03810 6.09661 6.11658 6.56217 6.61759 6.82967 6.99213 7.82626 8.77559 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.004807 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.297290 B = 5822.864219 C = 7019.854804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.081 3.919 3 H 0.059 0.941 4 C -0.150 4.150 5 C 0.151 3.849 6 H 0.081 0.919 7 N -0.736 5.736 8 C 0.260 3.740 9 C -0.263 4.263 10 C -0.026 4.026 11 C -0.263 4.263 12 C 0.153 3.847 13 O -0.233 6.233 14 C -0.410 4.410 15 H 0.097 0.903 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.254 1.254 20 H -0.267 1.267 21 H -0.268 1.268 22 C -0.318 4.318 23 C -0.166 4.166 24 C 0.063 3.937 25 N -0.682 5.682 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.394 0.606 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.105 0.895 35 H 0.272 0.728 36 H 0.109 0.891 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.696 -17.299 -4.672 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.077 0.923 4 C -0.189 4.189 5 C 0.046 3.954 6 H 0.099 0.901 7 N -0.366 5.366 8 C 0.156 3.844 9 C -0.285 4.285 10 C -0.045 4.045 11 C -0.284 4.284 12 C 0.102 3.898 13 O -0.139 6.139 14 C -0.486 4.486 15 H 0.115 0.885 16 C -0.220 4.220 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.178 1.178 20 H -0.192 1.192 21 H -0.193 1.193 22 C -0.342 4.342 23 C -0.206 4.206 24 C -0.067 4.067 25 N -0.312 5.312 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.229 0.771 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.506 -16.689 -4.970 23.316 hybrid contribution 0.239 0.797 0.417 0.931 sum -15.267 -15.892 -4.552 22.502 Atomic orbital electron populations 1.21751 0.92945 1.02816 1.02160 1.21551 0.96200 0.97415 0.87722 0.92311 1.22532 0.93439 1.03122 0.99833 1.21026 0.94219 0.82230 0.97923 0.90129 1.44813 1.13938 1.08486 1.69320 1.17534 0.85612 0.91725 0.89543 1.20536 0.96376 0.98065 1.13538 1.20826 0.95019 0.94455 0.94184 1.20256 1.01207 0.92186 1.14735 1.19639 0.92512 0.85287 0.92358 1.83944 1.47104 1.13106 1.69784 1.21799 1.00397 0.87835 1.38553 0.88541 1.26564 0.98137 0.99662 0.97684 1.70196 1.19411 1.20771 1.45608 0.84550 0.77538 0.76394 0.77821 1.17763 1.19176 1.19251 1.20492 0.98417 0.96591 1.18663 1.22661 1.01566 1.00281 0.96101 1.21846 0.87458 1.00028 0.97353 1.60684 1.08323 1.22935 1.39290 0.91322 0.91711 0.92438 0.88523 0.90972 0.77128 0.84142 0.83117 0.87661 0.91885 0.87287 0.92191 0.89219 0.93271 0.90159 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.47 71.98 0.68 -1.15 16 2 C 0.08 1.34 2.87 44.98 0.13 1.47 16 3 H 0.06 1.23 6.64 -2.39 -0.02 1.21 16 4 C -0.15 -2.26 5.03 30.69 0.15 -2.11 16 5 C 0.15 2.97 2.49 45.08 0.11 3.08 16 6 H 0.08 1.59 6.48 -2.39 -0.02 1.57 16 7 N -0.74 -20.18 4.52 -318.63 -1.44 -21.61 16 8 C 0.26 9.35 6.64 38.20 0.25 9.60 16 9 C -0.26 -8.50 8.87 22.43 0.20 -8.30 16 10 C -0.03 -0.92 10.03 22.23 0.22 -0.69 16 11 C -0.26 -11.85 9.99 22.42 0.22 -11.62 16 12 C 0.15 8.03 6.64 22.56 0.15 8.18 16 13 O -0.23 -14.62 9.76 -22.73 -0.22 -14.85 16 14 C -0.41 -24.75 9.49 67.92 0.64 -24.10 16 15 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 16 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 17 N -0.92 -57.95 13.67 21.61 0.30 -57.66 16 18 Si 1.02 44.20 29.55 68.60 2.03 46.23 16 19 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 C -0.32 -14.56 9.01 22.52 0.20 -14.36 16 23 C -0.17 -2.96 5.70 30.65 0.17 -2.79 16 24 C 0.06 1.21 6.41 86.32 0.55 1.77 16 25 N -0.68 -11.30 6.50 -491.44 -3.20 -14.49 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.39 10.89 7.02 -92.71 -0.65 10.24 16 32 H 0.14 3.56 6.18 -2.91 -0.02 3.55 16 33 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 34 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 35 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 36 H 0.11 5.18 5.64 -2.91 -0.02 5.17 16 37 H 0.06 1.30 7.80 -2.38 -0.02 1.28 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.23 7.69 -2.39 -0.02 1.22 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.35 4.37 8.79 -89.69 -0.79 3.59 16 Total: -1.00 -72.06 326.31 1.24 -70.82 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.39 Total: 33.49 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 4.17 Total: -41.93 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -4.34 Total: -93.77 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.22 Total: -14.85 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.06 1.24 -70.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692185884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.350 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds