Wall clock time and date at job start Thu Apr 9 2020 14:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46471 * 2 1 4 4 C 1.53037 * 109.46001 * 240.01773 * 2 1 3 5 5 C 1.53120 * 109.27810 * 180.79495 * 4 2 1 6 6 H 1.08999 * 109.57646 * 177.59921 * 5 4 2 7 7 N 1.46494 * 109.53239 * 297.76568 * 5 4 2 8 8 C 1.39673 * 120.00308 * 204.67312 * 7 5 4 9 9 C 1.39000 * 120.03750 * 359.73312 * 8 7 5 10 10 C 1.38155 * 120.06605 * 179.73927 * 9 8 7 11 11 C 1.38174 * 120.13649 * 0.50684 * 10 9 8 12 12 C 1.38916 * 120.07889 * 359.76686 * 11 10 9 13 13 O 1.35756 * 120.02911 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99566 * 174.48660 * 13 12 11 15 15 H 1.07995 * 120.00297 * 5.04902 * 14 13 12 16 16 C 1.38661 * 119.99388 * 185.05097 * 14 13 12 17 17 N 1.31553 * 119.99920 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99506 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47003 * 90.00490 * 18 16 14 20 20 H 1.48504 * 109.46706 * 210.00116 * 18 16 14 21 21 H 1.48496 * 109.47397 * 330.00215 * 18 16 14 22 22 C 1.38746 * 120.04169 * 179.97438 * 8 7 5 23 23 C 1.53126 * 109.15002 * 57.66889 * 5 4 2 24 24 C 1.53031 * 109.28079 * 302.33995 * 23 5 4 25 25 N 1.46849 * 109.52396 * 59.18206 * 24 23 5 26 26 H 1.09002 * 109.46959 * 300.00348 * 1 2 3 27 27 H 1.09004 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47252 * 60.00033 * 1 2 3 29 29 H 1.09001 * 109.50154 * 300.74573 * 4 2 1 30 30 H 1.08999 * 109.50548 * 60.86623 * 4 2 1 31 31 H 0.97008 * 120.00150 * 24.67684 * 7 5 4 32 32 H 1.08001 * 119.97283 * 359.96495 * 9 8 7 33 33 H 1.07989 * 119.93275 * 180.23044 * 10 9 8 34 34 H 1.07994 * 119.96009 * 179.74731 * 11 10 9 35 35 H 0.97002 * 119.99671 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.07475 * 359.97438 * 22 8 7 37 37 H 1.09008 * 109.49987 * 182.39844 * 23 5 4 38 38 H 1.08998 * 109.50513 * 62.28381 * 23 5 4 39 39 H 1.09001 * 109.46326 * 299.16527 * 24 23 5 40 40 H 1.09000 * 109.45417 * 179.18956 * 24 23 5 41 41 H 1.00897 * 111.00374 * 62.34914 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7211 -1.2499 5 6 3.5709 -0.7360 -1.2357 6 1 3.9388 -1.2857 -2.1021 7 7 4.0745 0.6389 -1.2781 8 6 5.3513 0.8999 -1.7808 9 6 6.1468 -0.1452 -2.2360 10 6 7.4077 0.1129 -2.7384 11 6 7.8859 1.4085 -2.7804 12 6 7.0980 2.4567 -2.3218 13 8 7.5691 3.7292 -2.3631 14 6 6.7139 4.7102 -2.0105 15 1 5.7323 4.4618 -1.6352 16 6 7.0950 6.0381 -2.1299 17 7 8.2910 6.3406 -2.5867 18 14 5.9099 7.3972 -1.6421 19 1 6.1015 7.7297 -0.2076 20 1 6.1719 8.6026 -2.4690 21 1 4.5144 6.9398 -1.8621 22 6 5.8289 2.2019 -1.8219 23 6 4.0547 -1.4189 0.0467 24 6 3.4864 -0.6778 1.2591 25 7 2.0192 -0.6918 1.1994 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.6658 -1.7449 -1.2573 30 1 1.6894 -0.1985 -2.1399 31 1 3.5214 1.3683 -0.9570 32 1 5.7776 -1.1595 -2.2003 33 1 8.0224 -0.7002 -3.0948 34 1 8.8735 1.6065 -3.1699 35 1 8.5574 7.2696 -2.6706 36 1 5.2142 3.0153 -1.4657 37 1 5.1439 -1.3948 0.0831 38 1 3.7124 -2.4536 0.0594 39 1 3.8403 0.3531 1.2532 40 1 3.8174 -1.1702 2.1734 41 1 1.6646 -1.6354 1.2425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692185885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:23 Heat of formation + Delta-G solvation = -5.453462 kcal Electronic energy + Delta-G solvation = -21441.190016 eV Core-core repulsion = 18321.053857 eV Total energy + Delta-G solvation = -3120.136159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.90180 -38.70115 -36.66579 -34.36012 -32.46143 -32.17229 -30.96819 -28.75159 -27.71197 -27.04664 -25.22535 -23.58074 -21.85725 -21.60300 -21.24239 -19.49945 -17.77968 -17.38550 -16.06501 -15.67949 -15.29200 -15.09129 -14.81489 -14.42081 -14.18599 -14.01487 -13.64195 -13.42403 -13.27355 -12.88955 -12.58522 -12.34340 -12.22460 -12.07778 -11.63145 -11.61512 -11.47473 -11.13570 -11.02846 -10.90863 -10.74537 -10.65736 -10.50702 -10.35644 -9.41305 -9.35168 -8.73876 -8.48700 -7.33438 -6.75057 -6.39100 -3.98253 2.40202 2.59032 3.15701 3.16312 3.20787 3.75516 4.01354 4.06019 4.55131 4.67765 4.71051 4.82042 4.95766 5.11715 5.17673 5.24741 5.36114 5.38761 5.42535 5.52394 5.65758 5.69576 5.79068 5.80790 5.91329 5.95996 5.98638 6.05937 6.08593 6.30443 6.39626 6.67382 6.67953 6.88897 7.06214 7.17721 7.23168 7.41113 7.51228 7.69447 8.04351 8.07247 8.22264 9.07142 9.79882 10.79315 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004780 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.612112 B = 5856.143897 C = 7060.599394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.081 0.919 4 C -0.159 4.159 5 C 0.158 3.842 6 H 0.077 0.923 7 N -0.746 5.746 8 C 0.251 3.749 9 C -0.280 4.280 10 C -0.041 4.041 11 C -0.237 4.237 12 C 0.190 3.810 13 O -0.179 6.179 14 C -0.388 4.388 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.939 3.061 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.302 4.302 23 C -0.173 4.173 24 C 0.060 3.940 25 N -0.681 5.681 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.392 0.608 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.269 0.731 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 -14.380 4.429 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.029 4.029 3 H 0.099 0.901 4 C -0.199 4.199 5 C 0.052 3.948 6 H 0.095 0.905 7 N -0.378 5.378 8 C 0.150 3.850 9 C -0.303 4.303 10 C -0.059 4.059 11 C -0.258 4.258 12 C 0.135 3.865 13 O -0.082 6.082 14 C -0.465 4.465 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.500 5.500 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.326 4.326 23 C -0.214 4.214 24 C -0.070 4.070 25 N -0.310 5.310 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.227 0.773 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.576 -13.687 4.718 19.177 hybrid contribution -0.551 0.250 -0.369 0.708 sum -13.127 -13.437 4.349 19.282 Atomic orbital electron populations 1.21801 0.94318 1.01844 1.02228 1.21549 0.95167 0.98512 0.87641 0.90135 1.22564 0.95438 1.01729 1.00174 1.20719 0.92541 0.84330 0.97238 0.90518 1.44637 1.15432 1.06616 1.71111 1.17456 0.84044 0.92933 0.90584 1.20079 0.97174 0.96696 1.16342 1.20373 0.94470 0.95080 0.96024 1.20032 1.01554 0.91251 1.12937 1.19068 0.90791 0.86143 0.90462 1.83989 1.38604 1.10518 1.75081 1.21291 0.97196 0.84231 1.43780 0.89231 1.25264 0.97122 0.97355 0.96797 1.70041 1.18213 1.19154 1.42591 0.85745 0.79519 0.79718 0.78624 1.19944 1.20297 1.19326 1.20496 0.99440 0.95058 1.17609 1.22727 1.02685 0.98970 0.97002 1.21946 0.86687 1.01623 0.96710 1.60740 1.09122 1.21968 1.39121 0.91814 0.92856 0.92117 0.90989 0.90783 0.77274 0.87915 0.87319 0.86984 0.92135 0.85922 0.90548 0.91958 0.90407 0.91016 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.47 37.16 0.35 -0.81 16 2 C 0.08 0.77 2.87 -67.72 -0.19 0.58 16 3 H 0.08 0.89 6.64 -51.93 -0.34 0.54 16 4 C -0.16 -1.50 5.02 -26.65 -0.13 -1.64 16 5 C 0.16 1.83 2.49 -67.81 -0.17 1.66 16 6 H 0.08 0.95 6.50 -51.93 -0.34 0.61 16 7 N -0.75 -10.87 4.52 -52.07 -0.24 -11.11 16 8 C 0.25 4.66 6.63 -83.82 -0.56 4.10 16 9 C -0.28 -4.97 8.84 -39.33 -0.35 -5.32 16 10 C -0.04 -0.75 10.03 -39.64 -0.40 -1.15 16 11 C -0.24 -5.22 9.99 -39.35 -0.39 -5.61 16 12 C 0.19 4.73 6.64 -39.14 -0.26 4.47 16 13 O -0.18 -5.23 9.76 0.02 0.00 -5.23 16 14 C -0.39 -11.07 9.49 30.89 0.29 -10.78 16 15 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 18 Si 0.94 20.88 29.55 -169.99 -5.02 15.85 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 C -0.30 -6.72 9.01 -39.20 -0.35 -7.07 16 23 C -0.17 -1.85 5.67 -26.65 -0.15 -2.00 16 24 C 0.06 0.64 6.41 -3.84 -0.02 0.62 16 25 N -0.68 -6.57 6.50 -106.76 -0.69 -7.26 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.39 5.57 7.02 -40.82 -0.29 5.28 16 32 H 0.10 1.58 6.14 -52.49 -0.32 1.26 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.12 2.76 5.64 -52.49 -0.30 2.47 16 37 H 0.08 0.95 7.73 -51.92 -0.40 0.55 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.00 7.69 -51.93 -0.40 0.61 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.34 2.76 8.79 -39.29 -0.35 2.41 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -30.59 326.14 -8.66 -39.24 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.95 Total: 10.56 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -2.43 Total: -21.96 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.17 Total: -43.38 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.59 -8.66 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692185885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.790 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds