Wall clock time and date at job start Thu Apr 9 2020 14:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46471 * 2 1 4 4 C 1.53037 * 109.46001 * 240.01773 * 2 1 3 5 5 C 1.53120 * 109.27810 * 180.79495 * 4 2 1 6 6 H 1.08999 * 109.57646 * 177.59921 * 5 4 2 7 7 N 1.46494 * 109.53239 * 297.76568 * 5 4 2 8 8 C 1.39673 * 120.00308 * 204.67312 * 7 5 4 9 9 C 1.39000 * 120.03750 * 359.73312 * 8 7 5 10 10 C 1.38155 * 120.06605 * 179.73927 * 9 8 7 11 11 C 1.38174 * 120.13649 * 0.50684 * 10 9 8 12 12 C 1.38916 * 120.07889 * 359.76686 * 11 10 9 13 13 O 1.35756 * 120.02911 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99566 * 174.48660 * 13 12 11 15 15 H 1.07995 * 120.00297 * 5.04902 * 14 13 12 16 16 C 1.38661 * 119.99388 * 185.05097 * 14 13 12 17 17 N 1.31553 * 119.99920 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99506 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47003 * 90.00490 * 18 16 14 20 20 H 1.48504 * 109.46706 * 210.00116 * 18 16 14 21 21 H 1.48496 * 109.47397 * 330.00215 * 18 16 14 22 22 C 1.38746 * 120.04169 * 179.97438 * 8 7 5 23 23 C 1.53126 * 109.15002 * 57.66889 * 5 4 2 24 24 C 1.53031 * 109.28079 * 302.33995 * 23 5 4 25 25 N 1.46849 * 109.52396 * 59.18206 * 24 23 5 26 26 H 1.09002 * 109.46959 * 300.00348 * 1 2 3 27 27 H 1.09004 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47252 * 60.00033 * 1 2 3 29 29 H 1.09001 * 109.50154 * 300.74573 * 4 2 1 30 30 H 1.08999 * 109.50548 * 60.86623 * 4 2 1 31 31 H 0.97008 * 120.00150 * 24.67684 * 7 5 4 32 32 H 1.08001 * 119.97283 * 359.96495 * 9 8 7 33 33 H 1.07989 * 119.93275 * 180.23044 * 10 9 8 34 34 H 1.07994 * 119.96009 * 179.74731 * 11 10 9 35 35 H 0.97002 * 119.99671 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.07475 * 359.97438 * 22 8 7 37 37 H 1.09008 * 109.49987 * 182.39844 * 23 5 4 38 38 H 1.08998 * 109.50513 * 62.28381 * 23 5 4 39 39 H 1.09001 * 109.46326 * 299.16527 * 24 23 5 40 40 H 1.09000 * 109.45417 * 179.18956 * 24 23 5 41 41 H 1.00897 * 111.00374 * 62.34914 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7211 -1.2499 5 6 3.5709 -0.7360 -1.2357 6 1 3.9388 -1.2857 -2.1021 7 7 4.0745 0.6389 -1.2781 8 6 5.3513 0.8999 -1.7808 9 6 6.1468 -0.1452 -2.2360 10 6 7.4077 0.1129 -2.7384 11 6 7.8859 1.4085 -2.7804 12 6 7.0980 2.4567 -2.3218 13 8 7.5691 3.7292 -2.3631 14 6 6.7139 4.7102 -2.0105 15 1 5.7323 4.4618 -1.6352 16 6 7.0950 6.0381 -2.1299 17 7 8.2910 6.3406 -2.5867 18 14 5.9099 7.3972 -1.6421 19 1 6.1015 7.7297 -0.2076 20 1 6.1719 8.6026 -2.4690 21 1 4.5144 6.9398 -1.8621 22 6 5.8289 2.2019 -1.8219 23 6 4.0547 -1.4189 0.0467 24 6 3.4864 -0.6778 1.2591 25 7 2.0192 -0.6918 1.1994 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.6658 -1.7449 -1.2573 30 1 1.6894 -0.1985 -2.1399 31 1 3.5214 1.3683 -0.9570 32 1 5.7776 -1.1595 -2.2003 33 1 8.0224 -0.7002 -3.0948 34 1 8.8735 1.6065 -3.1699 35 1 8.5574 7.2696 -2.6706 36 1 5.2142 3.0153 -1.4657 37 1 5.1439 -1.3948 0.0831 38 1 3.7124 -2.4536 0.0594 39 1 3.8403 0.3531 1.2532 40 1 3.8174 -1.1702 2.1734 41 1 1.6646 -1.6354 1.2425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692185885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:23 Heat of formation + Delta-G solvation = -26.377831 kcal Electronic energy + Delta-G solvation = -21442.097365 eV Core-core repulsion = 18321.053857 eV Total energy + Delta-G solvation = -3121.043508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08984 -40.22939 -38.29390 -35.65451 -34.20779 -33.26858 -32.15275 -30.41542 -29.07036 -27.89907 -27.21207 -24.55749 -23.24741 -22.90362 -22.39886 -20.72196 -19.61256 -18.99649 -17.40779 -16.89394 -16.58598 -16.30781 -16.01199 -15.93108 -15.52397 -15.46990 -15.14910 -14.67652 -14.51733 -14.27703 -13.91867 -13.57722 -13.43894 -13.20614 -12.95453 -12.80239 -12.63194 -12.50066 -12.44449 -12.15297 -11.97229 -11.87726 -11.73203 -11.59990 -11.29106 -10.93891 -10.60590 -9.28138 -9.09911 -8.46060 -8.22951 -6.14351 0.75984 0.91946 1.33048 1.43392 1.50636 2.17640 2.52568 2.88737 3.26120 3.30419 3.58923 3.75802 3.85824 3.93178 4.12110 4.20517 4.32828 4.39212 4.43882 4.56753 4.61607 4.68327 4.75510 4.82103 4.85874 4.93598 4.99319 5.07521 5.12378 5.13039 5.15740 5.19743 5.28611 5.35239 5.47689 5.75173 5.80262 6.03794 6.09732 6.11692 6.56266 6.61785 6.83043 6.99293 7.82669 8.77612 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004780 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.612112 B = 5856.143897 C = 7060.599394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.082 3.918 3 H 0.059 0.941 4 C -0.150 4.150 5 C 0.151 3.849 6 H 0.080 0.920 7 N -0.736 5.736 8 C 0.260 3.740 9 C -0.263 4.263 10 C -0.026 4.026 11 C -0.263 4.263 12 C 0.153 3.847 13 O -0.233 6.233 14 C -0.410 4.410 15 H 0.097 0.903 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.017 2.983 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.255 1.255 22 C -0.318 4.318 23 C -0.166 4.166 24 C 0.063 3.937 25 N -0.682 5.682 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.394 0.606 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.105 0.895 35 H 0.272 0.728 36 H 0.110 0.890 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.577 -17.307 4.970 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.077 0.923 4 C -0.189 4.189 5 C 0.046 3.954 6 H 0.098 0.902 7 N -0.366 5.366 8 C 0.156 3.844 9 C -0.285 4.285 10 C -0.045 4.045 11 C -0.284 4.284 12 C 0.102 3.898 13 O -0.139 6.139 14 C -0.487 4.487 15 H 0.115 0.885 16 C -0.220 4.220 17 N -0.560 5.560 18 Si 0.836 3.164 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.179 1.179 22 C -0.342 4.342 23 C -0.206 4.206 24 C -0.067 4.067 25 N -0.312 5.312 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.229 0.771 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.378 -16.696 5.278 23.304 hybrid contribution 0.198 0.800 -0.503 0.965 sum -15.179 -15.896 4.775 22.492 Atomic orbital electron populations 1.21752 0.92951 1.02813 1.02161 1.21525 0.96199 0.97427 0.87725 0.92286 1.22508 0.93457 1.03120 0.99857 1.21023 0.94200 0.82233 0.97926 0.90161 1.44814 1.13810 1.08474 1.69459 1.17531 0.85600 0.91719 0.89563 1.20536 0.96341 0.98024 1.13620 1.20825 0.95049 0.94442 0.94173 1.20251 1.01528 0.92326 1.14282 1.19638 0.92589 0.85499 0.92080 1.83947 1.40089 1.12202 1.77688 1.21763 0.97704 0.84976 1.44227 0.88532 1.26567 0.99154 0.99781 0.96530 1.70188 1.20724 1.19887 1.45194 0.84613 0.77262 0.75849 0.78627 1.18809 1.19400 1.17866 1.20494 0.98701 0.96575 1.18402 1.22663 1.01584 1.00277 0.96096 1.21845 0.87447 1.00036 0.97342 1.60682 1.08333 1.22931 1.39292 0.92420 0.91328 0.91729 0.88522 0.91017 0.77118 0.84150 0.83123 0.87667 0.91879 0.87255 0.92162 0.89235 0.93244 0.90149 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.47 71.98 0.68 -1.15 16 2 C 0.08 1.34 2.87 44.94 0.13 1.47 16 3 H 0.06 1.23 6.64 -2.39 -0.02 1.22 16 4 C -0.15 -2.27 5.02 30.65 0.15 -2.12 16 5 C 0.15 2.97 2.49 45.07 0.11 3.08 16 6 H 0.08 1.59 6.50 -2.39 -0.02 1.57 16 7 N -0.74 -20.16 4.52 -318.64 -1.44 -21.60 16 8 C 0.26 9.34 6.63 38.20 0.25 9.60 16 9 C -0.26 -8.51 8.84 22.43 0.20 -8.31 16 10 C -0.03 -0.92 10.03 22.23 0.22 -0.70 16 11 C -0.26 -11.85 9.99 22.42 0.22 -11.63 16 12 C 0.15 8.03 6.64 22.56 0.15 8.18 16 13 O -0.23 -14.62 9.76 -22.85 -0.22 -14.84 16 14 C -0.41 -24.79 9.49 67.92 0.64 -24.15 16 15 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 16 C -0.02 -1.35 5.49 84.84 0.47 -0.89 16 17 N -0.92 -57.98 13.67 21.61 0.30 -57.68 16 18 Si 1.02 44.13 29.55 68.60 2.03 46.15 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 22 C -0.32 -14.56 9.01 22.52 0.20 -14.36 16 23 C -0.17 -2.95 5.67 30.65 0.17 -2.77 16 24 C 0.06 1.21 6.41 86.32 0.55 1.76 16 25 N -0.68 -11.23 6.50 -491.68 -3.20 -14.43 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.39 10.87 7.02 -92.70 -0.65 10.22 16 32 H 0.14 3.56 6.14 -2.91 -0.02 3.55 16 33 H 0.15 3.99 8.06 -2.92 -0.02 3.97 16 34 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 36 H 0.11 5.19 5.64 -2.91 -0.02 5.17 16 37 H 0.06 1.30 7.73 -2.38 -0.02 1.28 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 1.23 7.69 -2.39 -0.02 1.21 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.35 4.35 8.79 -89.70 -0.79 3.56 16 Total: -1.00 -72.04 326.14 1.24 -70.80 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.39 Total: 33.58 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 4.17 Total: -41.98 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -4.34 Total: -93.71 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.22 Total: -14.84 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.04 1.24 -70.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692185885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.422 kcal (2) G-P(sol) polarization free energy of solvation -72.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds