Wall clock time and date at job start Thu Apr 9 2020 14:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.38394 * 119.99948 * 179.97438 * 3 2 1 5 5 N 1.32491 * 119.17709 * 179.73206 * 4 3 2 6 6 C 1.32488 * 120.93102 * 179.75832 * 5 4 3 7 7 C 1.50702 * 120.35724 * 180.25270 * 6 5 4 8 8 C 1.53003 * 117.49884 * 163.87213 * 7 6 5 9 9 C 1.53001 * 60.00125 * 252.51655 * 8 7 6 10 10 C 1.38132 * 119.29093 * 0.51067 * 6 5 4 11 11 C 1.39640 * 118.48866 * 359.74039 * 10 6 5 12 12 N 1.38531 * 120.48812 * 180.02562 * 11 10 6 13 13 C 1.46500 * 120.00382 * 184.98104 * 12 11 10 14 14 C 1.46505 * 119.99605 * 4.98314 * 12 11 10 15 15 C 1.50701 * 109.46948 * 90.00070 * 14 12 11 16 16 H 1.07997 * 120.00272 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99469 * 180.02562 * 15 14 12 18 18 N 1.31506 * 120.00658 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99429 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47048 * 90.00216 * 19 17 15 21 21 H 1.48504 * 109.46899 * 209.99832 * 19 17 15 22 22 H 1.48500 * 109.47300 * 329.99721 * 19 17 15 23 23 N 1.32444 * 119.17872 * 359.97438 * 4 3 2 24 24 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 29 29 H 0.96996 * 119.99606 * 0.02562 * 3 2 1 30 30 H 1.09002 * 115.55150 * 309.58718 * 7 6 5 31 31 H 1.08997 * 117.49597 * 0.02562 * 8 7 6 32 32 H 1.08998 * 117.49639 * 145.02460 * 8 7 6 33 33 H 1.09008 * 117.49684 * 252.51182 * 9 8 7 34 34 H 1.08992 * 117.51668 * 107.48302 * 9 8 7 35 35 H 1.08000 * 120.75549 * 179.73041 * 10 6 5 36 36 H 1.09007 * 109.46774 * 90.00200 * 13 12 11 37 37 H 1.08997 * 109.46873 * 210.00165 * 13 12 11 38 38 H 1.09002 * 109.46914 * 330.00419 * 13 12 11 39 39 H 1.09001 * 109.46787 * 209.99673 * 14 12 11 40 40 H 1.08994 * 109.47056 * 329.99966 * 14 12 11 41 41 H 0.97005 * 120.00641 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3790 1.6341 0.0005 5 7 3.8027 2.8894 -0.0049 6 6 5.0972 3.1713 0.0002 7 6 5.5648 4.6039 -0.0003 8 6 7.0217 4.8717 0.3825 9 6 5.8962 5.2393 1.3516 10 6 6.0138 2.1379 0.0006 11 6 5.5377 0.8252 0.0011 12 7 6.4202 -0.2426 0.0021 13 6 5.9128 -1.6125 -0.1075 14 6 7.8611 -0.0018 0.1128 15 6 8.2594 0.0029 1.5662 16 1 7.5138 -0.1571 2.3309 17 6 9.5756 0.2124 1.9195 18 7 10.4834 0.4076 0.9883 19 14 10.0692 0.2189 3.7212 20 1 10.4355 -1.1583 4.1390 21 1 11.2338 1.1203 3.9120 22 1 8.9308 0.6998 4.5446 23 7 4.2251 0.6152 0.0016 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3880 2.1185 0.0004 30 1 5.1182 5.2440 -0.7613 31 1 7.6421 4.0116 0.6343 32 1 7.5340 5.6879 -0.1267 33 1 5.6681 6.2975 1.4798 34 1 5.7758 4.6212 2.2412 35 1 7.0746 2.3406 0.0004 36 1 5.8562 -1.8960 -1.1586 37 1 6.5850 -2.2920 0.4164 38 1 4.9195 -1.6688 0.3380 39 1 8.4024 -0.7905 -0.4098 40 1 8.1036 0.9625 -0.3336 41 1 11.4095 0.5546 1.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692984238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:25 Heat of formation + Delta-G solvation = 84.296076 kcal Electronic energy + Delta-G solvation = -21505.473312 eV Core-core repulsion = 18421.521736 eV Total energy + Delta-G solvation = -3083.951576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29234 -37.18605 -36.79069 -35.22006 -32.90516 -31.77151 -31.08154 -28.82492 -27.71369 -25.75111 -23.94738 -23.43736 -22.59760 -22.01683 -20.94544 -19.63188 -17.20334 -16.99874 -16.51201 -15.70504 -15.21978 -14.93481 -14.82094 -14.47460 -14.13561 -14.10666 -13.81503 -13.27728 -13.10148 -12.40543 -12.16892 -11.83979 -11.71372 -11.66572 -11.40704 -11.33594 -11.21565 -10.96512 -10.78332 -10.71093 -10.36946 -10.22110 -10.14050 -9.78234 -9.53203 -9.33769 -8.55567 -8.35770 -7.79280 -6.89277 -6.13917 -4.23160 1.97225 2.28978 3.23732 3.25220 3.30865 3.35623 3.85606 4.14294 4.35361 4.61565 4.76904 5.04092 5.11882 5.16064 5.17733 5.21155 5.29378 5.42749 5.61851 5.69902 5.83314 5.89739 5.97722 5.99128 6.06970 6.09573 6.13710 6.20147 6.33944 6.42886 6.51976 6.53591 6.89815 6.92646 7.18641 7.40514 7.48605 7.77149 7.95150 8.07620 8.29639 8.33962 8.83682 9.18480 9.44033 10.90226 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.005918 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.293066 B = 4730.374469 C = 5979.374019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 N -0.710 5.710 4 C 0.593 3.407 5 N -0.620 5.620 6 C 0.251 3.749 7 C -0.103 4.103 8 C -0.170 4.170 9 C -0.162 4.162 10 C -0.320 4.320 11 C 0.480 3.520 12 N -0.578 5.578 13 C 0.102 3.898 14 C 0.250 3.750 15 C -0.534 4.534 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.892 5.892 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.274 1.274 23 N -0.634 5.634 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.407 0.593 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 3.208 -2.636 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 N -0.351 5.351 4 C 0.234 3.766 5 N -0.349 5.349 6 C 0.110 3.890 7 C -0.122 4.122 8 C -0.207 4.207 9 C -0.200 4.200 10 C -0.350 4.350 11 C 0.234 3.766 12 N -0.287 5.287 13 C -0.042 4.042 14 C 0.130 3.870 15 C -0.572 4.572 16 H 0.077 0.923 17 C -0.137 4.137 18 N -0.531 5.531 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 N -0.370 5.370 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.243 0.757 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.164 0.836 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.554 2.662 -2.680 14.071 hybrid contribution 1.018 0.303 1.028 1.478 sum -12.536 2.965 -1.652 12.988 Atomic orbital electron populations 1.22007 0.95195 1.02750 1.02231 1.21075 0.92884 0.82557 1.02049 1.43867 1.01410 1.07893 1.81883 1.18725 0.86103 0.84246 0.87529 1.67423 1.17502 1.20175 1.29775 1.19852 0.87203 0.93420 0.88523 1.20658 0.98964 0.92416 1.00175 1.23137 0.90821 1.03984 1.02747 1.22900 1.03008 1.00724 0.93369 1.21795 1.02528 0.91713 1.18994 1.18167 0.86075 0.87483 0.84834 1.46997 1.06823 1.02813 1.72051 1.21446 0.99929 0.83080 0.99764 1.19449 0.72157 0.98103 0.97274 1.21498 0.93610 1.49988 0.92153 0.92259 1.24914 0.96226 0.94812 0.97779 1.69918 1.02193 1.48376 1.32600 0.86520 0.78213 0.78036 0.84872 1.20548 1.20963 1.19844 1.67241 1.02219 1.35065 1.32504 0.92219 0.92244 0.91023 0.92096 0.92074 0.75687 0.86524 0.87216 0.88406 0.88648 0.88766 0.83554 0.94450 0.91546 0.91449 0.94409 0.94170 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 10.03 37.16 0.37 -1.02 16 2 C 0.14 1.71 6.37 -4.04 -0.03 1.68 16 3 N -0.71 -10.45 5.70 -62.32 -0.36 -10.81 16 4 C 0.59 11.27 8.42 -322.89 -2.72 8.55 16 5 N -0.62 -12.00 10.39 -10.24 -0.11 -12.10 16 6 C 0.25 4.85 6.49 -82.35 -0.53 4.31 16 7 C -0.10 -1.62 6.25 -91.77 -0.57 -2.20 16 8 C -0.17 -2.50 9.82 -26.73 -0.26 -2.76 16 9 C -0.16 -2.32 10.23 -26.73 -0.27 -2.59 16 10 C -0.32 -6.80 8.58 -39.10 -0.34 -7.13 16 11 C 0.48 10.55 7.39 -154.84 -1.14 9.40 16 12 N -0.58 -12.77 2.96 -182.94 -0.54 -13.31 16 13 C 0.10 1.89 10.51 59.85 0.63 2.52 16 14 C 0.25 6.15 5.03 -5.19 -0.03 6.13 16 15 C -0.53 -14.31 9.39 -34.44 -0.32 -14.63 16 16 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 17 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -24.81 13.29 55.43 0.74 -24.08 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 N -0.63 -12.98 8.37 -13.17 -0.11 -13.09 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.41 5.18 8.59 -40.82 -0.35 4.83 16 30 H 0.12 1.65 8.14 -51.93 -0.42 1.22 16 31 H 0.11 1.88 6.46 -51.93 -0.34 1.55 16 32 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.15 3.23 4.46 -52.49 -0.23 3.00 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 38 H 0.07 1.21 7.33 -51.93 -0.38 0.83 16 39 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 40 H 0.04 1.03 6.04 -51.93 -0.31 0.72 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -29.74 342.09 -11.78 -41.53 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.22 Total: 6.83 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -5.31 Total: 3.92 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -0.38 Total: -73.39 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.74 -11.78 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692984238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.822 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds