Wall clock time and date at job start Thu Apr 9 2020 14:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.38394 * 119.99948 * 179.97438 * 3 2 1 5 5 N 1.32491 * 119.17709 * 179.73206 * 4 3 2 6 6 C 1.32488 * 120.93102 * 179.75832 * 5 4 3 7 7 C 1.50702 * 120.35724 * 180.25270 * 6 5 4 8 8 C 1.53003 * 117.49884 * 163.87213 * 7 6 5 9 9 C 1.53001 * 60.00125 * 252.51655 * 8 7 6 10 10 C 1.38132 * 119.29093 * 0.51067 * 6 5 4 11 11 C 1.39640 * 118.48866 * 359.74039 * 10 6 5 12 12 N 1.38531 * 120.48812 * 180.02562 * 11 10 6 13 13 C 1.46500 * 120.00382 * 184.98104 * 12 11 10 14 14 C 1.46505 * 119.99605 * 4.98314 * 12 11 10 15 15 C 1.50701 * 109.46948 * 90.00070 * 14 12 11 16 16 H 1.07997 * 120.00272 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99469 * 180.02562 * 15 14 12 18 18 N 1.31506 * 120.00658 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99429 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47048 * 90.00216 * 19 17 15 21 21 H 1.48504 * 109.46899 * 209.99832 * 19 17 15 22 22 H 1.48500 * 109.47300 * 329.99721 * 19 17 15 23 23 N 1.32444 * 119.17872 * 359.97438 * 4 3 2 24 24 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 29 29 H 0.96996 * 119.99606 * 0.02562 * 3 2 1 30 30 H 1.09002 * 115.55150 * 309.58718 * 7 6 5 31 31 H 1.08997 * 117.49597 * 0.02562 * 8 7 6 32 32 H 1.08998 * 117.49639 * 145.02460 * 8 7 6 33 33 H 1.09008 * 117.49684 * 252.51182 * 9 8 7 34 34 H 1.08992 * 117.51668 * 107.48302 * 9 8 7 35 35 H 1.08000 * 120.75549 * 179.73041 * 10 6 5 36 36 H 1.09007 * 109.46774 * 90.00200 * 13 12 11 37 37 H 1.08997 * 109.46873 * 210.00165 * 13 12 11 38 38 H 1.09002 * 109.46914 * 330.00419 * 13 12 11 39 39 H 1.09001 * 109.46787 * 209.99673 * 14 12 11 40 40 H 1.08994 * 109.47056 * 329.99966 * 14 12 11 41 41 H 0.97005 * 120.00641 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3790 1.6341 0.0005 5 7 3.8027 2.8894 -0.0049 6 6 5.0972 3.1713 0.0002 7 6 5.5648 4.6039 -0.0003 8 6 7.0217 4.8717 0.3825 9 6 5.8962 5.2393 1.3516 10 6 6.0138 2.1379 0.0006 11 6 5.5377 0.8252 0.0011 12 7 6.4202 -0.2426 0.0021 13 6 5.9128 -1.6125 -0.1075 14 6 7.8611 -0.0018 0.1128 15 6 8.2594 0.0029 1.5662 16 1 7.5138 -0.1571 2.3309 17 6 9.5756 0.2124 1.9195 18 7 10.4834 0.4076 0.9883 19 14 10.0692 0.2189 3.7212 20 1 10.4355 -1.1583 4.1390 21 1 11.2338 1.1203 3.9120 22 1 8.9308 0.6998 4.5446 23 7 4.2251 0.6152 0.0016 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3880 2.1185 0.0004 30 1 5.1182 5.2440 -0.7613 31 1 7.6421 4.0116 0.6343 32 1 7.5340 5.6879 -0.1267 33 1 5.6681 6.2975 1.4798 34 1 5.7758 4.6212 2.2412 35 1 7.0746 2.3406 0.0004 36 1 5.8562 -1.8960 -1.1586 37 1 6.5850 -2.2920 0.4164 38 1 4.9195 -1.6688 0.3380 39 1 8.4024 -0.7905 -0.4098 40 1 8.1036 0.9625 -0.3336 41 1 11.4095 0.5546 1.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692984238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:25 Heat of formation + Delta-G solvation = 69.870834 kcal Electronic energy + Delta-G solvation = -21506.098837 eV Core-core repulsion = 18421.521736 eV Total energy + Delta-G solvation = -3084.577102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81790 -38.46739 -38.35020 -36.52570 -34.88052 -33.37708 -32.34421 -30.25964 -29.46895 -27.34985 -25.45875 -25.21270 -23.63716 -23.20802 -22.50483 -21.05744 -18.76236 -18.65331 -18.34389 -17.15246 -16.73986 -16.53037 -16.04450 -15.84729 -15.69914 -15.53996 -15.18350 -14.84901 -14.69372 -14.00793 -13.44016 -13.19610 -13.14838 -12.88814 -12.74802 -12.66098 -12.62892 -12.57203 -12.38439 -12.24032 -12.15837 -11.80330 -11.51393 -11.37902 -11.26447 -10.67410 -10.63559 -9.92512 -9.26729 -8.58325 -8.16018 -6.38197 0.43528 0.67603 1.37570 1.39211 1.49355 1.90117 2.27020 2.41204 2.87401 3.06044 3.18993 3.32776 3.88678 3.92518 4.03432 4.18913 4.23320 4.29886 4.37532 4.51112 4.56604 4.60144 4.66010 4.74685 4.80195 4.90847 4.96936 5.02594 5.07569 5.11779 5.16385 5.23387 5.26003 5.30191 5.43812 5.61648 5.89509 6.02303 6.03870 6.52683 6.60337 6.70956 6.80380 7.32340 7.66381 8.82388 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.005918 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.293066 B = 4730.374469 C = 5979.374019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 N -0.695 5.695 4 C 0.580 3.420 5 N -0.622 5.622 6 C 0.255 3.745 7 C -0.115 4.115 8 C -0.168 4.168 9 C -0.148 4.148 10 C -0.347 4.347 11 C 0.464 3.536 12 N -0.590 5.590 13 C 0.105 3.895 14 C 0.267 3.733 15 C -0.545 4.545 16 H 0.044 0.956 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.277 1.277 23 N -0.640 5.640 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.418 0.582 30 H 0.140 0.860 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.023 0.977 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.535 4.158 -2.129 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.012 3.988 3 N -0.335 5.335 4 C 0.221 3.779 5 N -0.350 5.350 6 C 0.113 3.887 7 C -0.133 4.133 8 C -0.206 4.206 9 C -0.185 4.185 10 C -0.378 4.378 11 C 0.219 3.781 12 N -0.299 5.299 13 C -0.038 4.038 14 C 0.146 3.854 15 C -0.584 4.584 16 H 0.062 0.938 17 C -0.177 4.177 18 N -0.557 5.557 19 Si 0.782 3.218 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.202 1.202 23 N -0.376 5.376 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.256 0.744 30 H 0.158 0.842 31 H 0.095 0.905 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.093 0.907 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.191 3.594 -2.179 15.762 hybrid contribution 1.405 0.018 0.842 1.638 sum -13.787 3.612 -1.338 14.315 Atomic orbital electron populations 1.21942 0.91750 1.04205 1.03068 1.21238 0.95593 0.80933 1.01000 1.44079 0.99842 1.09492 1.80106 1.19246 0.87551 0.84093 0.87012 1.67591 1.17281 1.20194 1.29979 1.20392 0.86957 0.94832 0.86525 1.20818 0.99737 0.90757 1.02024 1.23121 0.90333 1.03728 1.03374 1.22985 1.01654 1.02170 0.91699 1.21774 1.02119 0.92397 1.21485 1.18373 0.86795 0.87646 0.85334 1.46909 1.05918 1.04143 1.72979 1.21525 0.99907 0.81496 1.00889 1.19015 0.73836 0.96569 0.95937 1.21609 0.93657 1.50347 0.92777 0.93754 1.25624 0.96092 0.94243 1.01696 1.70002 1.02569 1.48755 1.34405 0.85570 0.77768 0.78444 0.79972 1.19616 1.20025 1.20227 1.67262 1.01620 1.35582 1.33148 0.91481 0.91244 0.89259 0.92904 0.93369 0.74370 0.84196 0.90469 0.85451 0.85059 0.90689 0.85292 0.92796 0.91610 0.90908 0.95732 0.95913 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.03 71.98 0.72 -1.44 16 2 C 0.14 3.15 6.37 86.38 0.55 3.70 16 3 N -0.69 -19.51 5.70 -351.08 -2.00 -21.51 16 4 C 0.58 21.82 8.42 261.52 2.20 24.02 16 5 N -0.62 -23.70 10.39 -186.30 -1.94 -25.64 16 6 C 0.26 9.91 6.49 42.44 0.28 10.18 16 7 C -0.11 -3.48 6.25 -11.54 -0.07 -3.55 16 8 C -0.17 -4.86 9.82 30.60 0.30 -4.55 16 9 C -0.15 -3.96 10.23 30.60 0.31 -3.64 16 10 C -0.35 -15.35 8.58 22.58 0.19 -15.15 16 11 C 0.46 21.00 7.39 133.19 0.98 21.98 16 12 N -0.59 -26.97 2.96 -732.69 -2.17 -29.14 16 13 C 0.10 3.96 10.51 127.77 1.34 5.31 16 14 C 0.27 13.77 5.03 85.63 0.43 14.21 16 15 C -0.55 -30.15 9.39 25.60 0.24 -29.91 16 16 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 17 C 0.02 1.31 5.46 84.66 0.46 1.77 16 18 N -0.92 -51.91 13.29 21.45 0.28 -51.62 16 19 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 N -0.64 -26.44 8.37 -195.58 -1.64 -28.08 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.42 9.79 8.59 -92.71 -0.80 8.99 16 30 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 31 H 0.08 2.77 6.46 -2.39 -0.02 2.75 16 32 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.13 6.09 4.46 -2.91 -0.01 6.08 16 36 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 38 H 0.07 2.64 7.33 -2.39 -0.02 2.62 16 39 H 0.02 1.31 8.07 -2.39 -0.02 1.30 16 40 H 0.02 1.25 6.04 -2.39 -0.01 1.23 16 41 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -64.94 342.09 2.75 -62.19 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.24 Total: 25.53 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 7.95 Total: 22.92 kcal Atomic # 7 Polarization: -148.53 SS G_CDS: -7.46 Total: -155.99 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -64.94 2.75 -62.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692984238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.062 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds