Wall clock time and date at job start Thu Apr 9 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00056 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00093 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46924 * 89.99863 * 9 7 5 11 11 H 1.48499 * 109.47472 * 209.99850 * 9 7 5 12 12 H 1.48501 * 109.47283 * 330.00165 * 9 7 5 13 13 C 1.38523 * 120.00390 * 270.00293 * 3 2 1 14 14 C 1.39687 * 120.48495 * 4.71688 * 13 3 2 15 15 C 1.38088 * 118.49183 * 179.75533 * 14 13 3 16 16 C 1.50693 * 120.35524 * 180.28576 * 15 14 13 17 17 C 1.52997 * 117.50015 * 343.86458 * 16 15 14 18 18 C 1.52995 * 60.00182 * 252.50561 * 17 16 15 19 19 N 1.32522 * 119.28907 * 0.52557 * 15 14 13 20 20 C 1.32467 * 120.93292 * 359.74547 * 19 15 14 21 21 N 1.38392 * 119.17838 * 180.02562 * 20 19 15 22 22 C 1.46498 * 120.00610 * 179.97438 * 21 20 19 23 23 N 1.32472 * 121.64597 * 359.96889 * 20 19 15 24 24 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 29 29 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 30 30 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 31 31 H 0.96994 * 120.00272 * 179.97438 * 8 7 5 32 32 H 1.07998 * 120.75294 * 0.03366 * 14 13 3 33 33 H 1.09008 * 115.54985 * 129.56878 * 16 15 14 34 34 H 1.09001 * 117.50023 * 359.97438 * 17 16 15 35 35 H 1.09009 * 117.49972 * 145.01666 * 17 16 15 36 36 H 1.09000 * 117.50435 * 252.51331 * 18 17 16 37 37 H 1.08997 * 117.51892 * 107.47729 * 18 17 16 38 38 H 0.97005 * 120.00056 * 359.96755 * 21 20 19 39 39 H 1.08999 * 109.47079 * 300.00376 * 22 21 20 40 40 H 1.09008 * 109.46769 * 59.99563 * 22 21 20 41 41 H 1.08998 * 109.47759 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 5.3914 2.1834 3.2573 9 14 3.0135 3.4369 3.9281 10 1 2.3078 2.5716 4.9071 11 1 3.8113 4.4574 4.6544 12 1 2.0184 4.1138 3.0582 13 6 2.2491 2.0343 -1.1996 14 6 1.9275 1.4219 -2.4132 15 6 2.1703 2.1124 -3.5841 16 6 1.8336 1.4942 -4.9166 17 6 1.5848 -0.0149 -4.9525 18 6 2.8714 0.5626 -5.5457 19 7 2.7069 3.3226 -3.5238 20 6 3.0072 3.8771 -2.3588 21 7 3.5659 5.1430 -2.3381 22 6 3.9045 5.7735 -1.0599 23 7 2.7849 3.2505 -1.2130 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.0955 3.1410 1.1385 30 1 1.5818 1.6876 2.0284 31 1 5.7176 2.5744 4.0828 32 1 1.4947 0.4327 -2.4350 33 1 1.2440 2.1179 -5.5887 34 1 1.6651 -0.5608 -4.0124 35 1 0.8314 -0.3845 -5.6482 36 1 2.9645 0.5732 -6.6317 37 1 3.7980 0.3972 -4.9960 38 1 3.7335 5.6129 -3.1701 39 1 3.0038 5.8733 -0.4541 40 1 4.6311 5.1562 -0.5315 41 1 4.3309 6.7598 -1.2428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693020285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:27 Heat of formation + Delta-G solvation = 92.908869 kcal Electronic energy + Delta-G solvation = -21831.697906 eV Core-core repulsion = 18748.119809 eV Total energy + Delta-G solvation = -3083.578098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39054 -37.38527 -37.01589 -34.73383 -32.69334 -32.40876 -30.20306 -30.00292 -27.31491 -25.85602 -24.24281 -23.41688 -22.55491 -22.08073 -20.84713 -19.59054 -17.39023 -17.09119 -16.83038 -15.90433 -15.23403 -14.86303 -14.57588 -14.52868 -14.15638 -14.01006 -13.80806 -13.23827 -13.02709 -12.64010 -12.28970 -12.04139 -11.85333 -11.65179 -11.54468 -11.47235 -11.15072 -10.88623 -10.65797 -10.60813 -10.45530 -10.39569 -9.93930 -9.88218 -9.47380 -9.41743 -8.57797 -8.29310 -7.73569 -6.99176 -6.06661 -4.04029 1.87960 2.20505 3.25781 3.30490 3.35601 3.37860 3.68757 3.94936 4.40000 4.48010 4.67205 4.90738 5.00394 5.20751 5.24274 5.32712 5.44493 5.58058 5.59525 5.61621 5.65110 5.74431 5.75936 5.89473 6.03776 6.04247 6.05145 6.13850 6.18906 6.32935 6.38822 6.46859 6.57214 6.78817 6.99702 7.38032 7.47504 7.63142 7.92626 8.15167 8.26120 8.55525 8.98143 9.21365 9.53757 11.06946 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016750 B = 0.006282 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.246864 B = 4456.069172 C = 5502.251822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.571 5.571 4 C 0.224 3.776 5 C -0.518 4.518 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.900 5.900 9 Si 0.872 3.128 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.486 3.514 14 C -0.352 4.352 15 C 0.257 3.743 16 C -0.100 4.100 17 C -0.172 4.172 18 C -0.161 4.161 19 N -0.620 5.620 20 C 0.596 3.404 21 N -0.709 5.709 22 C 0.110 3.890 23 N -0.599 5.599 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.408 0.592 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.559 -0.934 -13.024 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.002 4.002 3 N -0.279 5.279 4 C 0.104 3.896 5 C -0.557 4.557 6 H 0.090 0.910 7 C -0.129 4.129 8 N -0.539 5.539 9 Si 0.699 3.301 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.189 1.189 13 C 0.240 3.760 14 C -0.383 4.383 15 C 0.114 3.886 16 C -0.119 4.119 17 C -0.209 4.209 18 C -0.199 4.199 19 N -0.348 5.348 20 C 0.237 3.763 21 N -0.346 5.346 22 C -0.035 4.035 23 N -0.332 5.332 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.243 0.757 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.030 -0.026 -12.414 14.785 hybrid contribution -0.626 -0.004 0.497 0.799 sum -8.656 -0.030 -11.917 14.729 Atomic orbital electron populations 1.22237 0.96776 1.01503 1.02353 1.21390 0.93321 0.82537 1.02997 1.46717 1.65169 1.12254 1.03787 1.19658 0.96919 0.93456 0.79595 1.21315 0.95334 1.32284 1.06748 0.90984 1.24824 0.94917 0.95889 0.97312 1.69901 1.15198 1.45229 1.23526 0.86911 0.81325 0.80966 0.80877 1.20286 1.21056 1.18896 1.18099 0.84844 0.86964 0.86136 1.21529 1.19813 1.04782 0.92224 1.19775 0.88179 0.88103 0.92564 1.20677 1.04149 0.92097 0.95027 1.23054 0.99778 0.94801 1.03264 1.22919 0.94074 1.02651 1.00274 1.67445 1.25572 1.14141 1.27661 1.18872 0.86937 0.86568 0.83898 1.43680 1.67776 1.13787 1.09385 1.21427 1.01104 0.96191 0.84779 1.67457 1.26021 1.11178 1.28527 0.92417 0.92616 0.92007 0.89686 0.91311 0.93939 0.96117 0.92703 0.85021 0.86365 0.88144 0.88347 0.88440 0.88679 0.75675 0.92646 0.91658 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.12 2.00 5.78 -4.04 -0.02 1.98 16 3 N -0.57 -11.97 2.56 -175.04 -0.45 -12.42 16 4 C 0.22 5.41 4.22 -5.19 -0.02 5.39 16 5 C -0.52 -14.62 9.94 -34.44 -0.34 -14.97 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 9 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.49 10.27 7.38 -154.85 -1.14 9.12 16 14 C -0.35 -6.26 8.49 -39.10 -0.33 -6.60 16 15 C 0.26 4.41 6.49 -82.35 -0.53 3.88 16 16 C -0.10 -1.30 6.24 -91.78 -0.57 -1.87 16 17 C -0.17 -1.78 9.82 -26.74 -0.26 -2.04 16 18 C -0.16 -1.81 10.23 -26.73 -0.27 -2.08 16 19 N -0.62 -11.67 10.39 -10.24 -0.11 -11.78 16 20 C 0.60 11.96 8.42 -322.89 -2.72 9.24 16 21 N -0.71 -11.79 5.86 -69.13 -0.41 -12.19 16 22 C 0.11 1.73 10.68 59.85 0.64 2.37 16 23 N -0.60 -13.41 8.46 -13.17 -0.11 -13.53 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 28 H 0.07 1.02 6.43 -51.93 -0.33 0.69 16 29 H 0.04 1.09 6.53 -51.93 -0.34 0.75 16 30 H 0.02 0.48 7.50 -51.93 -0.39 0.09 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.13 2.00 4.68 -52.49 -0.25 1.76 16 33 H 0.12 1.40 8.14 -51.92 -0.42 0.98 16 34 H 0.10 1.08 6.45 -51.93 -0.34 0.74 16 35 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.41 5.61 8.94 -40.82 -0.37 5.25 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -33.01 339.25 -11.40 -44.42 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.24 Total: 6.07 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -5.31 Total: 4.48 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -0.30 Total: -76.58 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.01 -11.40 -44.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693020285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.325 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds