Wall clock time and date at job start Thu Apr 9 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 119.99658 * 90.00442 * 3 2 1 5 5 C 1.50701 * 109.47310 * 89.99973 * 4 3 2 6 6 H 1.07997 * 119.99940 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00037 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00056 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00093 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46924 * 89.99863 * 9 7 5 11 11 H 1.48499 * 109.47472 * 209.99850 * 9 7 5 12 12 H 1.48501 * 109.47283 * 330.00165 * 9 7 5 13 13 C 1.38523 * 120.00390 * 270.00293 * 3 2 1 14 14 C 1.39687 * 120.48495 * 4.71688 * 13 3 2 15 15 C 1.38088 * 118.49183 * 179.75533 * 14 13 3 16 16 C 1.50693 * 120.35524 * 180.28576 * 15 14 13 17 17 C 1.52997 * 117.50015 * 343.86458 * 16 15 14 18 18 C 1.52995 * 60.00182 * 252.50561 * 17 16 15 19 19 N 1.32522 * 119.28907 * 0.52557 * 15 14 13 20 20 C 1.32467 * 120.93292 * 359.74547 * 19 15 14 21 21 N 1.38392 * 119.17838 * 180.02562 * 20 19 15 22 22 C 1.46498 * 120.00610 * 179.97438 * 21 20 19 23 23 N 1.32472 * 121.64597 * 359.96889 * 20 19 15 24 24 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 29 29 H 1.08998 * 109.46888 * 209.99779 * 4 3 2 30 30 H 1.08994 * 109.47490 * 329.99842 * 4 3 2 31 31 H 0.96994 * 120.00272 * 179.97438 * 8 7 5 32 32 H 1.07998 * 120.75294 * 0.03366 * 14 13 3 33 33 H 1.09008 * 115.54985 * 129.56878 * 16 15 14 34 34 H 1.09001 * 117.50023 * 359.97438 * 17 16 15 35 35 H 1.09009 * 117.49972 * 145.01666 * 17 16 15 36 36 H 1.09000 * 117.50435 * 252.51331 * 18 17 16 37 37 H 1.08997 * 117.51892 * 107.47729 * 18 17 16 38 38 H 0.97005 * 120.00056 * 359.96755 * 21 20 19 39 39 H 1.08999 * 109.47079 * 300.00376 * 22 21 20 40 40 H 1.09008 * 109.46769 * 59.99563 * 22 21 20 41 41 H 1.08998 * 109.47759 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7038 6 1 4.3426 1.2303 1.0961 7 6 4.1494 2.3904 2.8775 8 7 5.3914 2.1834 3.2573 9 14 3.0135 3.4369 3.9281 10 1 2.3078 2.5716 4.9071 11 1 3.8113 4.4574 4.6544 12 1 2.0184 4.1138 3.0582 13 6 2.2491 2.0343 -1.1996 14 6 1.9275 1.4219 -2.4132 15 6 2.1703 2.1124 -3.5841 16 6 1.8336 1.4942 -4.9166 17 6 1.5848 -0.0149 -4.9525 18 6 2.8714 0.5626 -5.5457 19 7 2.7069 3.3226 -3.5238 20 6 3.0072 3.8771 -2.3588 21 7 3.5659 5.1430 -2.3381 22 6 3.9045 5.7735 -1.0599 23 7 2.7849 3.2505 -1.2130 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.0955 3.1410 1.1385 30 1 1.5818 1.6876 2.0284 31 1 5.7176 2.5744 4.0828 32 1 1.4947 0.4327 -2.4350 33 1 1.2440 2.1179 -5.5887 34 1 1.6651 -0.5608 -4.0124 35 1 0.8314 -0.3845 -5.6482 36 1 2.9645 0.5732 -6.6317 37 1 3.7980 0.3972 -4.9960 38 1 3.7335 5.6129 -3.1701 39 1 3.0038 5.8733 -0.4541 40 1 4.6311 5.1562 -0.5315 41 1 4.3309 6.7598 -1.2428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693020285.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:27 Heat of formation + Delta-G solvation = 73.930728 kcal Electronic energy + Delta-G solvation = -21832.520860 eV Core-core repulsion = 18748.119809 eV Total energy + Delta-G solvation = -3084.401052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82634 -38.66276 -38.30699 -36.07683 -34.81189 -33.81810 -31.89791 -31.37282 -29.03187 -27.28463 -25.60019 -24.75426 -24.14665 -23.11770 -22.22774 -20.93216 -19.05936 -18.88050 -18.38688 -17.30282 -16.51169 -16.27982 -16.27010 -15.87740 -15.71910 -15.37338 -15.03788 -14.71705 -14.56858 -14.24933 -13.89712 -13.58152 -13.18454 -13.06089 -12.85383 -12.63691 -12.43940 -12.34332 -12.21086 -11.99856 -11.93529 -11.77462 -11.51343 -11.40400 -11.25107 -10.78696 -10.68025 -9.81785 -9.22838 -8.52303 -8.29532 -6.33032 0.48132 0.68826 1.32731 1.35858 1.47192 1.95182 2.29348 2.33125 2.90925 3.04651 3.22297 3.35497 3.87096 3.95853 4.03529 4.17599 4.23234 4.38423 4.39757 4.43951 4.48565 4.61942 4.67019 4.73965 4.77119 4.84418 4.89286 4.98853 5.00766 5.04265 5.07841 5.24627 5.31819 5.36493 5.44410 5.51099 5.86509 5.96836 6.23350 6.56155 6.67305 6.68557 6.80606 7.29630 7.74601 8.87679 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016750 B = 0.006282 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.246864 B = 4456.069172 C = 5502.251822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.115 3.885 3 N -0.584 5.584 4 C 0.240 3.760 5 C -0.519 4.519 6 H 0.019 0.981 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.946 3.054 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.254 1.254 13 C 0.460 3.540 14 C -0.349 4.349 15 C 0.253 3.747 16 C -0.120 4.120 17 C -0.150 4.150 18 C -0.158 4.158 19 N -0.623 5.623 20 C 0.577 3.423 21 N -0.700 5.700 22 C 0.117 3.883 23 N -0.641 5.641 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.027 0.973 30 H 0.036 0.964 31 H 0.266 0.734 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.422 0.578 39 H 0.041 0.959 40 H 0.028 0.972 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 -1.179 -14.478 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.007 4.007 3 N -0.293 5.293 4 C 0.118 3.882 5 C -0.558 4.558 6 H 0.038 0.962 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.769 3.231 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.178 1.178 13 C 0.215 3.785 14 C -0.380 4.380 15 C 0.109 3.891 16 C -0.139 4.139 17 C -0.187 4.187 18 C -0.196 4.196 19 N -0.352 5.352 20 C 0.217 3.783 21 N -0.338 5.338 22 C -0.028 4.028 23 N -0.375 5.375 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.115 0.885 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.260 0.740 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.390 -0.286 -13.912 17.366 hybrid contribution 0.210 0.026 0.822 0.849 sum -10.180 -0.260 -13.090 16.585 Atomic orbital electron populations 1.22131 0.93961 1.03529 1.01917 1.21646 0.95515 0.80340 1.03225 1.46771 1.66122 1.13688 1.02730 1.19241 0.94300 0.93083 0.81624 1.21453 0.96861 1.31301 1.06152 0.96234 1.25763 0.96551 0.97231 0.98810 1.70063 1.17531 1.46883 1.24438 0.85738 0.79185 0.79149 0.79004 1.18329 1.20697 1.17776 1.18549 0.85543 0.87249 0.87184 1.21739 1.19457 1.05698 0.91082 1.20545 0.86610 0.87473 0.94448 1.20780 1.06111 0.93720 0.93291 1.23191 0.99664 0.92302 1.03579 1.22993 0.93471 1.01609 1.01507 1.67604 1.25768 1.15059 1.26773 1.19290 0.87446 0.87598 0.83933 1.43748 1.66874 1.12907 1.10317 1.21400 0.99642 0.97590 0.84194 1.67395 1.27471 1.12479 1.30140 0.93369 0.92473 0.88649 0.90824 0.89760 0.95522 0.94569 0.92475 0.82476 0.84988 0.88504 0.85250 0.85902 0.90625 0.74043 0.93980 0.95335 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 10.24 71.98 0.74 -3.16 16 2 C 0.12 3.72 5.78 86.38 0.50 4.22 16 3 N -0.58 -24.87 2.56 -707.71 -1.81 -26.68 16 4 C 0.24 11.80 4.22 85.63 0.36 12.16 16 5 C -0.52 -30.60 9.94 25.60 0.25 -30.35 16 6 H 0.02 1.31 8.06 -2.91 -0.02 1.29 16 7 C 0.01 0.81 5.47 84.65 0.46 1.28 16 8 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 9 Si 0.95 44.31 27.47 68.60 1.88 46.19 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 13 C 0.46 19.77 7.38 133.21 0.98 20.75 16 14 C -0.35 -12.18 8.49 22.58 0.19 -11.99 16 15 C 0.25 8.42 6.49 42.42 0.28 8.70 16 16 C -0.12 -2.81 6.24 -11.54 -0.07 -2.88 16 17 C -0.15 -2.58 9.82 30.59 0.30 -2.28 16 18 C -0.16 -3.12 10.23 30.59 0.31 -2.81 16 19 N -0.62 -23.33 10.39 -186.32 -1.94 -25.26 16 20 C 0.58 23.55 8.42 261.52 2.20 25.75 16 21 N -0.70 -23.40 5.86 -372.63 -2.18 -25.59 16 22 C 0.12 3.72 10.68 127.77 1.36 5.09 16 23 N -0.64 -29.66 8.46 -195.56 -1.65 -31.32 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 28 H 0.08 2.41 6.43 -2.39 -0.02 2.39 16 29 H 0.03 1.40 6.53 -2.39 -0.02 1.38 16 30 H 0.04 1.66 7.50 -2.39 -0.02 1.65 16 31 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.16 4.47 4.68 -2.91 -0.01 4.46 16 33 H 0.13 2.74 8.14 -2.38 -0.02 2.72 16 34 H 0.10 1.75 6.45 -2.39 -0.02 1.74 16 35 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.42 11.33 8.94 -92.70 -0.83 10.51 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -76.22 339.25 2.62 -73.59 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.15 Total: 24.31 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: 7.87 Total: 24.49 kcal Atomic # 7 Polarization: -161.29 SS G_CDS: -7.28 Total: -168.58 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -76.22 2.62 -73.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693020285.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.522 kcal (2) G-P(sol) polarization free energy of solvation -76.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds