Wall clock time and date at job start Thu Apr 9 2020 14:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47191 * 2 1 4 4 N 1.46505 * 109.46963 * 240.00379 * 2 1 3 5 5 C 1.46493 * 120.00140 * 66.12897 * 4 2 1 6 6 C 1.50696 * 109.47343 * 90.00106 * 5 4 2 7 7 H 1.07993 * 119.99984 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99644 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00099 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99843 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46557 * 89.99950 * 10 8 6 12 12 H 1.48495 * 109.47115 * 210.00458 * 10 8 6 13 13 H 1.48505 * 109.47100 * 330.00641 * 10 8 6 14 14 C 1.38535 * 119.99527 * 246.12573 * 4 2 1 15 15 C 1.39679 * 120.48572 * 11.65580 * 14 4 2 16 16 C 1.38088 * 118.49022 * 179.80014 * 15 14 4 17 17 C 1.50697 * 120.35759 * 180.24694 * 16 15 14 18 18 C 1.52998 * 117.49811 * 343.85411 * 17 16 15 19 19 C 1.52999 * 117.49619 * 275.23116 * 17 16 15 20 20 N 1.32523 * 119.28992 * 0.47493 * 16 15 14 21 21 C 1.32470 * 120.93313 * 359.74643 * 20 16 15 22 22 N 1.38390 * 119.18059 * 180.02562 * 21 20 16 23 23 N 1.32474 * 121.64172 * 0.02562 * 21 20 16 24 24 H 1.09000 * 109.47133 * 59.99655 * 1 2 3 25 25 H 1.08996 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46905 * 299.99999 * 1 2 3 27 27 H 1.08997 * 109.47276 * 119.99846 * 2 1 3 28 28 H 1.08995 * 109.47403 * 59.99950 * 3 2 1 29 29 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46792 * 299.99763 * 3 2 1 31 31 H 1.09009 * 109.46760 * 209.99991 * 5 4 2 32 32 H 1.09001 * 109.47378 * 329.99585 * 5 4 2 33 33 H 0.97005 * 119.99502 * 179.97438 * 9 8 6 34 34 H 1.08003 * 120.75880 * 0.02562 * 15 14 4 35 35 H 1.09003 * 115.55049 * 129.56701 * 17 16 15 36 36 H 1.09004 * 117.49884 * 0.02562 * 18 17 16 37 37 H 1.09000 * 117.49794 * 145.01866 * 18 17 16 38 38 H 1.08994 * 117.49949 * 214.97493 * 19 17 16 39 39 H 1.09003 * 117.50141 * 359.97438 * 19 17 16 40 40 H 0.96995 * 120.00550 * 180.02562 * 22 21 20 41 41 H 0.97000 * 119.99667 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 1.7784 -0.1166 -2.5226 6 6 2.9211 0.7946 -2.8898 7 1 3.7435 0.9328 -2.2037 8 6 2.9164 1.4519 -4.1019 9 7 1.9146 1.2840 -4.9372 10 14 4.3325 2.5821 -4.5569 11 1 5.3797 1.8028 -5.2649 12 1 3.8364 3.6648 -5.4438 13 1 4.9072 3.1768 -3.3234 14 6 2.7069 -1.8863 -1.0731 15 6 2.7341 -2.5660 0.1469 16 6 3.4297 -3.7565 0.2223 17 6 3.4820 -4.5274 1.5161 18 6 3.0836 -3.7885 2.7952 19 6 4.5524 -4.1278 2.5336 20 7 4.0545 -4.2116 -0.8542 21 6 4.0157 -3.5436 -1.9975 22 7 4.6808 -4.0525 -3.0992 23 7 3.3561 -2.4006 -2.1125 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.7026 -0.9185 -3.2571 32 1 0.8492 0.4530 -2.5094 33 1 1.9113 1.7468 -5.7897 34 1 2.2198 -2.1712 1.0107 35 1 3.2254 -5.5844 1.4442 36 1 2.7833 -2.7449 2.7009 37 1 2.5646 -4.3593 3.5652 38 1 4.9997 -4.9218 3.1316 39 1 5.2191 -3.3077 2.2671 40 1 4.6607 -3.5731 -3.9421 41 1 5.1673 -4.8888 -3.0284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693033191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:29 Heat of formation + Delta-G solvation = 83.114216 kcal Electronic energy + Delta-G solvation = -21912.589678 eV Core-core repulsion = 18828.586853 eV Total energy + Delta-G solvation = -3084.002826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.33842 -37.54977 -37.06764 -33.89464 -32.93289 -32.62512 -30.33113 -29.36464 -26.98015 -26.55744 -24.51125 -22.98560 -22.58168 -22.13231 -20.55436 -19.17934 -17.43380 -17.18932 -16.37041 -15.69485 -15.29603 -15.14010 -14.68925 -14.46541 -14.31842 -13.86093 -13.61438 -13.23685 -13.02126 -12.26552 -11.89250 -11.69072 -11.57769 -11.51976 -11.30957 -11.16658 -11.04561 -10.80998 -10.69217 -10.46926 -10.44984 -10.28671 -10.05656 -9.79453 -9.57938 -9.35182 -8.38996 -8.24165 -7.87631 -6.96898 -5.98233 -4.01549 1.91160 2.24431 3.31507 3.37774 3.40290 3.52421 3.75283 4.09479 4.45572 4.54242 4.70319 4.91293 5.01379 5.24752 5.30850 5.34606 5.51221 5.56429 5.60856 5.68075 5.75201 5.86559 5.96436 6.04093 6.05377 6.14227 6.16911 6.25501 6.37872 6.39895 6.64454 6.74313 7.00208 7.10817 7.43951 7.64269 7.72148 7.89424 7.98056 8.27933 8.34040 8.42780 9.00998 9.29289 9.61114 11.08094 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.006061 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.978430 B = 4618.635582 C = 5532.342693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 C -0.154 4.154 4 N -0.572 5.572 5 C 0.256 3.744 6 C -0.506 4.506 7 H 0.056 0.944 8 C 0.060 3.940 9 N -0.898 5.898 10 Si 0.892 3.108 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.485 3.515 15 C -0.355 4.355 16 C 0.256 3.744 17 C -0.100 4.100 18 C -0.172 4.172 19 C -0.162 4.162 20 N -0.622 5.622 21 C 0.597 3.403 22 N -0.829 5.829 23 N -0.599 5.599 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.412 0.588 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -8.030 12.464 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 C -0.212 4.212 4 N -0.280 5.280 5 C 0.136 3.864 6 C -0.545 4.545 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.538 5.538 10 Si 0.720 3.280 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.201 1.201 14 C 0.238 3.762 15 C -0.386 4.386 16 C 0.113 3.887 17 C -0.119 4.119 18 C -0.209 4.209 19 C -0.200 4.200 20 N -0.351 5.351 21 C 0.236 3.764 22 N -0.378 5.378 23 N -0.332 5.332 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.243 0.757 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.944 -8.079 11.488 14.076 hybrid contribution 0.608 0.884 -0.170 1.086 sum 1.552 -7.195 11.318 13.501 Atomic orbital electron populations 1.22188 0.95758 1.01814 1.02276 1.20963 0.93636 0.93654 0.87517 1.22120 1.01643 0.95328 1.02115 1.47200 1.53567 1.18535 1.08724 1.19231 0.96230 0.93948 0.76946 1.21402 1.05886 1.25260 1.01984 0.92624 1.24886 0.95929 0.97084 0.96216 1.69931 1.30883 1.43540 1.09435 0.86597 0.82686 0.80379 0.78298 1.20788 1.21357 1.20121 1.18153 0.84845 0.85693 0.87491 1.21566 1.15768 1.01487 0.99786 1.19764 0.88003 0.89665 0.91308 1.20680 1.05499 0.99115 0.86595 1.23052 0.97912 1.01806 0.98145 1.22912 0.92073 1.03502 1.01479 1.67452 1.30487 1.37775 0.99425 1.18930 0.86555 0.84911 0.85960 1.41612 1.57690 1.28003 1.10455 1.67541 1.18243 1.14176 1.33195 0.91585 0.92834 0.92199 0.90560 0.93175 0.92556 0.90218 0.94105 0.95139 0.92954 0.85101 0.86367 0.88170 0.88345 0.88468 0.88760 0.75671 0.76404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.27 37.16 0.34 -2.09 16 2 C 0.15 2.51 3.10 -67.93 -0.21 2.30 16 3 C -0.15 -2.65 8.34 37.16 0.31 -2.34 16 4 N -0.57 -12.14 2.49 -167.45 -0.42 -12.55 16 5 C 0.26 6.45 4.39 -5.20 -0.02 6.43 16 6 C -0.51 -13.77 7.85 -34.44 -0.27 -14.04 16 7 H 0.06 1.56 7.51 -52.49 -0.39 1.17 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.90 -26.07 13.29 55.43 0.74 -25.33 16 10 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 C 0.49 10.36 7.33 -154.85 -1.13 9.23 16 15 C -0.35 -6.37 8.54 -39.10 -0.33 -6.70 16 16 C 0.26 4.40 6.49 -82.35 -0.53 3.87 16 17 C -0.10 -1.30 6.25 -91.77 -0.57 -1.87 16 18 C -0.17 -1.78 9.82 -26.73 -0.26 -2.05 16 19 C -0.16 -1.79 10.23 -26.73 -0.27 -2.06 16 20 N -0.62 -11.66 10.39 -10.24 -0.11 -11.76 16 21 C 0.60 11.89 8.67 -322.89 -2.80 9.09 16 22 N -0.83 -13.14 9.07 29.75 0.27 -12.87 16 23 N -0.60 -13.56 9.45 -13.16 -0.12 -13.68 16 24 H 0.07 1.10 6.92 -51.93 -0.36 0.74 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.16 5.62 -51.93 -0.29 0.87 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.05 7.94 -51.93 -0.41 0.63 16 30 H 0.08 1.58 6.93 -51.93 -0.36 1.22 16 31 H 0.04 1.16 7.61 -51.92 -0.40 0.77 16 32 H 0.03 0.79 6.72 -51.93 -0.35 0.45 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.13 2.02 4.43 -52.48 -0.23 1.79 16 35 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.10 1.07 6.45 -51.93 -0.33 0.74 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.41 6.34 8.94 -40.82 -0.37 5.98 16 41 H 0.41 5.21 8.94 -40.82 -0.37 4.84 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -31.38 334.59 -11.43 -42.81 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.95 Total: 10.35 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -5.86 Total: 1.32 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: 0.36 Total: -76.20 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.38 -11.43 -42.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693033191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.927 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds