Wall clock time and date at job start Thu Apr 9 2020 14:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47191 * 2 1 4 4 N 1.46505 * 109.46963 * 240.00379 * 2 1 3 5 5 C 1.46493 * 120.00140 * 66.12897 * 4 2 1 6 6 C 1.50696 * 109.47343 * 90.00106 * 5 4 2 7 7 H 1.07993 * 119.99984 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99644 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00099 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99843 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46557 * 89.99950 * 10 8 6 12 12 H 1.48495 * 109.47115 * 210.00458 * 10 8 6 13 13 H 1.48505 * 109.47100 * 330.00641 * 10 8 6 14 14 C 1.38535 * 119.99527 * 246.12573 * 4 2 1 15 15 C 1.39679 * 120.48572 * 11.65580 * 14 4 2 16 16 C 1.38088 * 118.49022 * 179.80014 * 15 14 4 17 17 C 1.50697 * 120.35759 * 180.24694 * 16 15 14 18 18 C 1.52998 * 117.49811 * 343.85411 * 17 16 15 19 19 C 1.52999 * 117.49619 * 275.23116 * 17 16 15 20 20 N 1.32523 * 119.28992 * 0.47493 * 16 15 14 21 21 C 1.32470 * 120.93313 * 359.74643 * 20 16 15 22 22 N 1.38390 * 119.18059 * 180.02562 * 21 20 16 23 23 N 1.32474 * 121.64172 * 0.02562 * 21 20 16 24 24 H 1.09000 * 109.47133 * 59.99655 * 1 2 3 25 25 H 1.08996 * 109.47254 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46905 * 299.99999 * 1 2 3 27 27 H 1.08997 * 109.47276 * 119.99846 * 2 1 3 28 28 H 1.08995 * 109.47403 * 59.99950 * 3 2 1 29 29 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46792 * 299.99763 * 3 2 1 31 31 H 1.09009 * 109.46760 * 209.99991 * 5 4 2 32 32 H 1.09001 * 109.47378 * 329.99585 * 5 4 2 33 33 H 0.97005 * 119.99502 * 179.97438 * 9 8 6 34 34 H 1.08003 * 120.75880 * 0.02562 * 15 14 4 35 35 H 1.09003 * 115.55049 * 129.56701 * 17 16 15 36 36 H 1.09004 * 117.49884 * 0.02562 * 18 17 16 37 37 H 1.09000 * 117.49794 * 145.01866 * 18 17 16 38 38 H 1.08994 * 117.49949 * 214.97493 * 19 17 16 39 39 H 1.09003 * 117.50141 * 359.97438 * 19 17 16 40 40 H 0.96995 * 120.00550 * 180.02562 * 22 21 20 41 41 H 0.97000 * 119.99667 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 1.7784 -0.1166 -2.5226 6 6 2.9211 0.7946 -2.8898 7 1 3.7435 0.9328 -2.2037 8 6 2.9164 1.4519 -4.1019 9 7 1.9146 1.2840 -4.9372 10 14 4.3325 2.5821 -4.5569 11 1 5.3797 1.8028 -5.2649 12 1 3.8364 3.6648 -5.4438 13 1 4.9072 3.1768 -3.3234 14 6 2.7069 -1.8863 -1.0731 15 6 2.7341 -2.5660 0.1469 16 6 3.4297 -3.7565 0.2223 17 6 3.4820 -4.5274 1.5161 18 6 3.0836 -3.7885 2.7952 19 6 4.5524 -4.1278 2.5336 20 7 4.0545 -4.2116 -0.8542 21 6 4.0157 -3.5436 -1.9975 22 7 4.6808 -4.0525 -3.0992 23 7 3.3561 -2.4006 -2.1125 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.7026 -0.9185 -3.2571 32 1 0.8492 0.4530 -2.5094 33 1 1.9113 1.7468 -5.7897 34 1 2.2198 -2.1712 1.0107 35 1 3.2254 -5.5844 1.4442 36 1 2.7833 -2.7449 2.7009 37 1 2.5646 -4.3593 3.5652 38 1 4.9997 -4.9218 3.1316 39 1 5.2191 -3.3077 2.2671 40 1 4.6607 -3.5731 -3.9421 41 1 5.1673 -4.8888 -3.0284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693033191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:29 Heat of formation + Delta-G solvation = 65.839608 kcal Electronic energy + Delta-G solvation = -21913.338761 eV Core-core repulsion = 18828.586853 eV Total energy + Delta-G solvation = -3084.751909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.165 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.78185 -38.98611 -38.17743 -35.28570 -34.85258 -34.16006 -31.92347 -30.93295 -28.72875 -27.92174 -25.97200 -24.51106 -24.21495 -23.05476 -21.79900 -20.62098 -18.92216 -18.59247 -18.45201 -17.01404 -16.72541 -16.41306 -16.36464 -15.97146 -15.75808 -15.11045 -15.00272 -14.76904 -14.56337 -14.03764 -13.34182 -13.18432 -12.95317 -12.92396 -12.80017 -12.56584 -12.46320 -12.31285 -12.20773 -12.15232 -11.81428 -11.75634 -11.43353 -11.29521 -11.16975 -10.76843 -10.56163 -9.77419 -9.36188 -8.59256 -8.07530 -6.23046 0.51568 0.72049 1.36018 1.37573 1.46945 2.08421 2.39751 2.53565 2.96051 3.15962 3.27359 3.37865 3.88327 4.00402 4.06705 4.18893 4.24489 4.28471 4.33059 4.51649 4.66162 4.76201 4.82403 4.84976 4.87409 4.94987 5.03006 5.09096 5.16620 5.21892 5.26934 5.34235 5.45789 5.51455 5.58090 5.74343 6.03815 6.18133 6.27414 6.60395 6.67674 6.85240 6.93459 7.43372 7.83042 8.92962 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.006061 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.978430 B = 4618.635582 C = 5532.342693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 C -0.147 4.147 4 N -0.582 5.582 5 C 0.280 3.720 6 C -0.505 4.505 7 H 0.043 0.957 8 C 0.011 3.989 9 N -0.930 5.930 10 Si 0.953 3.047 11 H -0.282 1.282 12 H -0.279 1.279 13 H -0.270 1.270 14 C 0.460 3.540 15 C -0.352 4.352 16 C 0.253 3.747 17 C -0.123 4.123 18 C -0.151 4.151 19 C -0.155 4.155 20 N -0.625 5.625 21 C 0.581 3.419 22 N -0.815 5.815 23 N -0.645 5.645 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.000 1.000 32 H 0.017 0.983 33 H 0.263 0.737 34 H 0.158 0.842 35 H 0.130 0.870 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.413 0.587 41 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -8.527 15.313 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 C -0.205 4.205 4 N -0.291 5.291 5 C 0.159 3.841 6 C -0.544 4.544 7 H 0.061 0.939 8 C -0.187 4.187 9 N -0.571 5.571 10 Si 0.779 3.221 11 H -0.208 1.208 12 H -0.204 1.204 13 H -0.195 1.195 14 C 0.214 3.786 15 C -0.382 4.382 16 C 0.110 3.890 17 C -0.141 4.141 18 C -0.188 4.188 19 C -0.193 4.193 20 N -0.354 5.354 21 C 0.220 3.780 22 N -0.365 5.365 23 N -0.380 5.380 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.018 0.982 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.175 0.825 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.244 0.756 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.385 -8.603 14.361 16.798 hybrid contribution 0.504 0.946 -1.012 1.474 sum 1.889 -7.658 13.349 15.505 Atomic orbital electron populations 1.22123 0.94081 1.02133 1.02814 1.21298 0.94963 0.93270 0.86733 1.22045 1.00279 0.95708 1.02425 1.47145 1.54556 1.19139 1.08289 1.18583 0.94980 0.91920 0.78627 1.21517 1.05839 1.25292 1.01783 0.93852 1.25638 0.98242 0.98583 0.96238 1.70041 1.32589 1.44626 1.09837 0.85635 0.79654 0.78653 0.78130 1.20808 1.20439 1.19499 1.18600 0.85247 0.86007 0.88726 1.21749 1.15881 1.01484 0.99123 1.20530 0.86422 0.89636 0.92419 1.20779 1.08457 0.99514 0.85392 1.23195 0.97342 1.01728 0.96581 1.22994 0.92316 1.03623 1.00343 1.67618 1.30742 1.37545 0.99531 1.19303 0.86774 0.84740 0.87232 1.41587 1.56926 1.28344 1.09630 1.67482 1.19847 1.15861 1.34809 0.94163 0.92621 0.88418 0.87913 0.89060 0.94511 0.93592 0.98211 0.96536 0.92834 0.82490 0.85237 0.88338 0.85442 0.86004 0.90276 0.75563 0.74727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 9.27 71.98 0.67 -3.72 16 2 C 0.14 4.65 3.10 44.99 0.14 4.79 16 3 C -0.15 -4.95 8.34 71.98 0.60 -4.35 16 4 N -0.58 -25.27 2.49 -683.70 -1.70 -26.97 16 5 C 0.28 14.86 4.39 85.63 0.38 15.24 16 6 C -0.51 -28.51 7.85 25.60 0.20 -28.31 16 7 H 0.04 2.51 7.51 -2.91 -0.02 2.49 16 8 C 0.01 0.63 5.46 84.66 0.46 1.09 16 9 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 10 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 14 C 0.46 19.93 7.33 133.21 0.98 20.91 16 15 C -0.35 -12.23 8.54 22.58 0.19 -12.04 16 16 C 0.25 8.37 6.49 42.42 0.28 8.64 16 17 C -0.12 -2.83 6.25 -11.54 -0.07 -2.91 16 18 C -0.15 -2.52 9.82 30.59 0.30 -2.22 16 19 C -0.16 -2.90 10.23 30.59 0.31 -2.59 16 20 N -0.62 -23.10 10.39 -186.32 -1.94 -25.04 16 21 C 0.58 23.45 8.67 261.51 2.27 25.72 16 22 N -0.81 -26.18 9.07 -59.79 -0.54 -26.73 16 23 N -0.65 -30.22 9.45 -195.56 -1.85 -32.07 16 24 H 0.04 1.35 6.92 -2.39 -0.02 1.33 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.10 2.85 5.62 -2.39 -0.01 2.84 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.04 1.35 7.94 -2.39 -0.02 1.33 16 30 H 0.04 1.85 6.93 -2.38 -0.02 1.83 16 31 H 0.00 -0.01 7.61 -2.38 -0.02 -0.03 16 32 H 0.02 0.92 6.72 -2.39 -0.02 0.90 16 33 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 34 H 0.16 4.43 4.43 -2.91 -0.01 4.42 16 35 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.10 1.70 6.45 -2.38 -0.02 1.68 16 37 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.41 13.10 8.94 -92.71 -0.83 12.27 16 41 H 0.42 10.67 8.94 -92.71 -0.83 9.84 16 Total: -1.00 -71.14 334.59 2.39 -68.75 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.59 Total: 29.85 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 6.70 Total: 20.25 kcal Atomic # 7 Polarization: -160.45 SS G_CDS: -5.74 Total: -166.19 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.14 2.39 -68.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693033191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.591 kcal (2) G-P(sol) polarization free energy of solvation -71.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds