Wall clock time and date at job start Thu Apr 9 2020 14:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38664 * 120.42250 * 2 1 4 4 C 1.38627 * 118.42336 * 180.24315 * 3 2 1 5 5 C 1.38227 * 119.15978 * 359.74843 * 4 3 2 6 6 N 1.31850 * 120.76559 * 359.97438 * 5 4 3 7 7 C 1.31892 * 121.72477 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.61604 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47242 * 89.99872 * 8 7 6 10 10 C 1.53006 * 109.47127 * 180.02562 * 9 8 7 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 8 12 12 C 1.46903 * 110.99673 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46899 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47202 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47202 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47088 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99550 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47056 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46715 * 119.99783 * 20 18 16 23 23 H 1.48499 * 109.47003 * 240.00086 * 20 18 16 24 24 H 1.09003 * 109.47253 * 270.25259 * 1 2 3 25 25 H 1.09003 * 109.47024 * 30.25444 * 1 2 3 26 26 H 1.08995 * 109.47020 * 150.25529 * 1 2 3 27 27 H 1.08004 * 120.78639 * 359.96137 * 3 2 1 28 28 H 1.07999 * 120.42286 * 179.72723 * 4 3 2 29 29 H 1.08001 * 119.61952 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47390 * 329.99842 * 8 7 6 31 31 H 1.09001 * 109.46948 * 209.99484 * 8 7 6 32 32 H 1.09001 * 109.47502 * 60.00161 * 9 8 7 33 33 H 1.09001 * 109.47289 * 299.99957 * 9 8 7 34 34 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 35 35 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 36 36 H 1.00895 * 111.00438 * 303.95603 * 11 10 9 37 37 H 1.08993 * 109.47323 * 299.99830 * 12 11 10 38 38 H 1.08995 * 109.46831 * 60.00909 * 12 11 10 39 39 H 1.08997 * 109.47273 * 300.00783 * 13 12 11 40 40 H 1.09002 * 109.47027 * 60.00056 * 13 12 11 41 41 H 1.09006 * 109.47316 * 300.00462 * 14 13 12 42 42 H 1.09002 * 109.47225 * 60.00005 * 14 13 12 43 43 H 1.08993 * 109.47042 * 299.99887 * 15 14 13 44 44 H 1.09003 * 109.46902 * 60.00656 * 15 14 13 45 45 H 0.97001 * 119.99994 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 -0.0052 5 6 4.2256 -0.0825 -0.0048 6 7 3.5255 -1.1997 0.0009 7 6 2.2066 -1.1917 0.0059 8 6 1.4539 -2.4972 0.0117 9 6 1.2047 -2.9359 1.4561 10 6 0.4411 -4.2617 1.4619 11 7 0.2024 -4.6832 2.8488 12 6 -0.5309 -5.9553 2.8935 13 6 -0.7596 -6.3611 4.3509 14 6 -1.5228 -7.6863 4.3976 15 6 -1.7520 -8.0917 5.8550 16 6 -2.5032 -9.3974 5.9010 17 1 -2.7881 -9.8891 4.9825 18 6 -2.8266 -9.9643 7.1155 19 7 -2.4801 -9.3653 8.2339 20 14 -3.7583 -11.5824 7.1725 21 1 -4.0286 -12.0470 5.7882 22 1 -2.9425 -12.5984 7.8846 23 1 -5.0440 -11.3883 7.8899 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3633 -0.8922 -0.5098 27 1 1.6890 2.1423 -0.0006 28 1 4.1736 2.0590 -0.0098 29 1 5.3046 -0.1288 -0.0084 30 1 2.0414 -3.2576 -0.5027 31 1 0.4994 -2.3686 -0.4987 32 1 0.6171 -2.1755 1.9706 33 1 2.1592 -3.0645 1.9666 34 1 -0.5134 -4.1335 0.9514 35 1 1.0290 -5.0219 0.9477 36 1 1.0689 -4.7467 3.3617 37 1 -1.4923 -5.8383 2.3935 38 1 0.0498 -6.7273 2.3888 39 1 0.2019 -6.4780 4.8507 40 1 -1.3401 -5.5891 4.8562 41 1 -2.4844 -7.5697 3.8977 42 1 -0.9420 -8.4581 3.8925 43 1 -0.7907 -8.2083 6.3553 44 1 -2.3332 -7.3199 6.3598 45 1 -2.7079 -9.7640 9.0883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693705974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:31 Heat of formation + Delta-G solvation = -6.177871 kcal Electronic energy + Delta-G solvation = -19733.296813 eV Core-core repulsion = 16748.962336 eV Total energy + Delta-G solvation = -2984.334478 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71755 -37.18805 -35.22928 -34.05234 -33.58797 -32.25232 -30.85221 -28.43413 -27.55781 -25.86326 -23.99461 -22.81501 -22.07737 -21.57770 -20.99616 -19.91517 -17.19821 -16.82065 -16.22254 -15.99752 -15.31331 -15.00526 -14.76028 -14.49414 -14.43032 -14.14586 -13.56572 -13.29263 -13.20608 -13.08287 -12.90039 -12.42216 -12.25047 -12.10360 -11.81207 -11.56447 -11.46131 -11.13228 -11.00236 -10.84299 -10.49177 -10.43812 -10.39103 -10.04966 -9.72844 -9.59310 -9.23066 -9.09417 -8.95169 -8.35160 -8.29990 -5.95255 -3.97316 0.75681 0.93676 3.33605 3.40729 3.41476 3.45194 3.91935 4.22241 4.38043 4.44270 4.50309 4.54168 4.65835 4.86064 4.96343 5.07769 5.12214 5.20677 5.28048 5.34514 5.39986 5.40880 5.50478 5.54185 5.59217 5.60452 5.71088 5.79113 5.89864 5.95506 6.03187 6.08479 6.20547 6.29846 6.39953 6.55775 6.86815 7.00559 7.08927 7.27379 7.45754 7.69517 7.74546 7.90502 8.06234 8.49114 9.10512 9.66436 11.16138 Molecular weight = 276.19amu Principal moments of inertia in cm(-1) A = 0.048671 B = 0.001894 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.151589 B =14783.699967 C =14848.527417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.133 4.133 3 C -0.077 4.077 4 C -0.177 4.177 5 C 0.094 3.906 6 N -0.480 5.480 7 C 0.134 3.866 8 C -0.073 4.073 9 C -0.108 4.108 10 C 0.059 3.941 11 N -0.693 5.693 12 C 0.060 3.940 13 C -0.116 4.116 14 C -0.109 4.109 15 C 0.020 3.980 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.339 0.661 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.014 0.986 44 H 0.016 0.984 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.542 22.422 -19.413 31.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.135 4.135 3 C -0.103 4.103 4 C -0.197 4.197 5 C -0.063 4.063 6 N -0.188 5.188 7 C -0.004 4.004 8 C -0.112 4.112 9 C -0.146 4.146 10 C -0.070 4.070 11 N -0.324 5.324 12 C -0.069 4.069 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.171 0.829 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.405 21.980 -19.166 30.963 hybrid contribution -0.079 -0.562 -0.088 0.574 sum 10.326 21.418 -19.254 30.595 Atomic orbital electron populations 1.20848 0.90076 1.03211 1.03104 1.20765 0.97724 0.93557 1.01428 1.21493 0.94200 0.98101 0.96503 1.22121 0.95313 0.99637 1.02618 1.22736 1.00290 0.87690 0.95623 1.67518 1.07822 1.31540 1.11962 1.21137 0.89623 0.94825 0.94806 1.20584 0.99378 0.92822 0.98388 1.21468 1.00710 0.97480 0.94949 1.21935 0.99480 0.95314 0.90289 1.60493 1.26529 1.32589 1.12772 1.22069 0.97867 0.88351 0.98618 1.21639 1.00809 0.98898 0.94027 1.21592 0.98149 0.93949 1.01032 1.19104 0.96770 0.96028 0.89796 1.21338 1.35703 1.06534 0.92155 0.92710 1.25044 0.96168 0.97582 0.95833 1.69982 1.47189 1.39119 0.97279 0.86551 0.79650 0.83874 0.78016 1.19778 1.21061 1.21031 0.90423 0.91446 0.90598 0.84929 0.84901 0.82851 0.90027 0.89741 0.90969 0.91709 0.91066 0.95347 0.84315 0.91307 0.95598 0.92775 0.91678 0.93450 0.93684 0.96727 0.96587 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.62 36.01 0.35 -0.35 16 2 C -0.13 -1.08 5.90 -104.48 -0.62 -1.70 16 3 C -0.08 -0.55 9.86 -39.28 -0.39 -0.94 16 4 C -0.18 -1.22 10.11 -39.44 -0.40 -1.62 16 5 C 0.09 0.79 11.18 -17.55 -0.20 0.59 16 6 N -0.48 -5.14 10.27 -9.47 -0.10 -5.24 16 7 C 0.13 1.29 6.03 -82.59 -0.50 0.79 16 8 C -0.07 -0.62 5.11 -27.89 -0.14 -0.76 16 9 C -0.11 -1.01 5.46 -26.73 -0.15 -1.16 16 10 C 0.06 0.62 5.69 -3.82 -0.02 0.60 16 11 N -0.69 -8.89 6.50 -113.78 -0.74 -9.63 16 12 C 0.06 0.87 5.69 -3.82 -0.02 0.85 16 13 C -0.12 -2.03 5.47 -26.73 -0.15 -2.18 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 17 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 20 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 26 H 0.08 0.43 5.95 -51.93 -0.31 0.12 16 27 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 28 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 29 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.34 4.18 8.73 -39.29 -0.34 3.83 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -32.50 368.66 -10.59 -43.09 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -8.11 Total: -2.14 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.92 Total: -21.86 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.10 Total: -41.69 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.50 -10.59 -43.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693705974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.913 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds