Wall clock time and date at job start Thu Apr 9 2020 14:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38664 * 120.42250 * 2 1 4 4 C 1.38627 * 118.42336 * 180.24315 * 3 2 1 5 5 C 1.38227 * 119.15978 * 359.74843 * 4 3 2 6 6 N 1.31850 * 120.76559 * 359.97438 * 5 4 3 7 7 C 1.31892 * 121.72477 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.61604 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47242 * 89.99872 * 8 7 6 10 10 C 1.53006 * 109.47127 * 180.02562 * 9 8 7 11 11 N 1.46898 * 109.47006 * 179.97438 * 10 9 8 12 12 C 1.46903 * 110.99673 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46899 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47202 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47202 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47088 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99550 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99993 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00026 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47056 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46715 * 119.99783 * 20 18 16 23 23 H 1.48499 * 109.47003 * 240.00086 * 20 18 16 24 24 H 1.09003 * 109.47253 * 270.25259 * 1 2 3 25 25 H 1.09003 * 109.47024 * 30.25444 * 1 2 3 26 26 H 1.08995 * 109.47020 * 150.25529 * 1 2 3 27 27 H 1.08004 * 120.78639 * 359.96137 * 3 2 1 28 28 H 1.07999 * 120.42286 * 179.72723 * 4 3 2 29 29 H 1.08001 * 119.61952 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47390 * 329.99842 * 8 7 6 31 31 H 1.09001 * 109.46948 * 209.99484 * 8 7 6 32 32 H 1.09001 * 109.47502 * 60.00161 * 9 8 7 33 33 H 1.09001 * 109.47289 * 299.99957 * 9 8 7 34 34 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 35 35 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 36 36 H 1.00895 * 111.00438 * 303.95603 * 11 10 9 37 37 H 1.08993 * 109.47323 * 299.99830 * 12 11 10 38 38 H 1.08995 * 109.46831 * 60.00909 * 12 11 10 39 39 H 1.08997 * 109.47273 * 300.00783 * 13 12 11 40 40 H 1.09002 * 109.47027 * 60.00056 * 13 12 11 41 41 H 1.09006 * 109.47316 * 300.00462 * 14 13 12 42 42 H 1.09002 * 109.47225 * 60.00005 * 14 13 12 43 43 H 1.08993 * 109.47042 * 299.99887 * 15 14 13 44 44 H 1.09003 * 109.46902 * 60.00656 * 15 14 13 45 45 H 0.97001 * 119.99994 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 -0.0052 5 6 4.2256 -0.0825 -0.0048 6 7 3.5255 -1.1997 0.0009 7 6 2.2066 -1.1917 0.0059 8 6 1.4539 -2.4972 0.0117 9 6 1.2047 -2.9359 1.4561 10 6 0.4411 -4.2617 1.4619 11 7 0.2024 -4.6832 2.8488 12 6 -0.5309 -5.9553 2.8935 13 6 -0.7596 -6.3611 4.3509 14 6 -1.5228 -7.6863 4.3976 15 6 -1.7520 -8.0917 5.8550 16 6 -2.5032 -9.3974 5.9010 17 1 -2.7881 -9.8891 4.9825 18 6 -2.8266 -9.9643 7.1155 19 7 -2.4801 -9.3653 8.2339 20 14 -3.7583 -11.5824 7.1725 21 1 -4.0286 -12.0470 5.7882 22 1 -2.9425 -12.5984 7.8846 23 1 -5.0440 -11.3883 7.8899 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3633 -0.8922 -0.5098 27 1 1.6890 2.1423 -0.0006 28 1 4.1736 2.0590 -0.0098 29 1 5.3046 -0.1288 -0.0084 30 1 2.0414 -3.2576 -0.5027 31 1 0.4994 -2.3686 -0.4987 32 1 0.6171 -2.1755 1.9706 33 1 2.1592 -3.0645 1.9666 34 1 -0.5134 -4.1335 0.9514 35 1 1.0290 -5.0219 0.9477 36 1 1.0689 -4.7467 3.3617 37 1 -1.4923 -5.8383 2.3935 38 1 0.0498 -6.7273 2.3888 39 1 0.2019 -6.4780 4.8507 40 1 -1.3401 -5.5891 4.8562 41 1 -2.4844 -7.5697 3.8977 42 1 -0.9420 -8.4581 3.8925 43 1 -0.7907 -8.2083 6.3553 44 1 -2.3332 -7.3199 6.3598 45 1 -2.7079 -9.7640 9.0883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693705974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:30 Heat of formation + Delta-G solvation = -25.211693 kcal Electronic energy + Delta-G solvation = -19734.122182 eV Core-core repulsion = 16748.962336 eV Total energy + Delta-G solvation = -2985.159846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.190 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29802 -38.24800 -36.49087 -35.29740 -34.42006 -33.83952 -31.88960 -29.85861 -28.24681 -27.03479 -25.51087 -23.50519 -22.89916 -22.81031 -21.98048 -21.53323 -18.43679 -17.79234 -17.45379 -17.02159 -16.53153 -16.00729 -15.88552 -15.71544 -15.41620 -15.10085 -14.58745 -14.34401 -14.02471 -13.89731 -13.74061 -13.62497 -13.47964 -13.32423 -12.95134 -12.86029 -12.68739 -12.44317 -12.31897 -12.16555 -12.11588 -11.93819 -11.56079 -11.35568 -11.29337 -10.97473 -10.62325 -10.55974 -10.33590 -9.67419 -9.36545 -8.19876 -6.31435 0.17915 0.37075 1.39670 1.40293 1.53876 2.41029 2.80541 3.12736 3.17272 3.45723 3.76300 3.96144 3.98629 4.08606 4.15365 4.16035 4.26277 4.30878 4.39047 4.55911 4.57232 4.62669 4.66572 4.75440 4.77721 4.82724 4.84470 4.87589 4.94357 4.97412 5.14838 5.18681 5.25165 5.27884 5.30550 5.35067 5.37442 5.43570 5.55703 5.78269 5.85497 5.87190 6.11246 6.25974 6.44685 6.86417 7.09346 7.37919 8.92248 Molecular weight = 276.19amu Principal moments of inertia in cm(-1) A = 0.048671 B = 0.001894 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.151589 B =14783.699967 C =14848.527417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.141 4.141 3 C -0.084 4.084 4 C -0.174 4.174 5 C 0.075 3.925 6 N -0.514 5.514 7 C 0.110 3.890 8 C -0.067 4.067 9 C -0.095 4.095 10 C 0.062 3.938 11 N -0.700 5.700 12 C 0.071 3.929 13 C -0.106 4.106 14 C -0.097 4.097 15 C 0.021 3.979 16 C -0.544 4.544 17 H 0.061 0.939 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.261 1.261 22 H -0.278 1.278 23 H -0.277 1.277 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.341 0.659 37 H 0.074 0.926 38 H 0.032 0.968 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.050 0.950 43 H -0.011 1.011 44 H -0.011 1.011 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.020 22.923 -20.891 32.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.143 4.143 3 C -0.110 4.110 4 C -0.193 4.193 5 C -0.082 4.082 6 N -0.223 5.223 7 C -0.028 4.028 8 C -0.106 4.106 9 C -0.134 4.134 10 C -0.067 4.067 11 N -0.331 5.331 12 C -0.058 4.058 13 C -0.144 4.144 14 C -0.135 4.135 15 C -0.016 4.016 16 C -0.582 4.582 17 H 0.079 0.921 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.185 1.185 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.175 0.825 28 H 0.179 0.821 29 H 0.188 0.812 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.007 0.993 44 H 0.008 0.992 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.888 22.491 -20.662 32.102 hybrid contribution 0.136 -0.635 0.394 0.759 sum 10.025 21.857 -20.268 31.448 Atomic orbital electron populations 1.20881 0.88750 1.04167 1.03286 1.21038 0.98818 0.93491 1.00966 1.21890 0.94548 0.98834 0.95745 1.22454 0.95640 1.00123 1.01119 1.23143 1.01261 0.87929 0.95886 1.67477 1.08656 1.33008 1.13177 1.21328 0.89661 0.95715 0.96056 1.20534 1.00009 0.92452 0.97571 1.21315 0.99629 0.96828 0.95580 1.21967 1.00115 0.95694 0.88882 1.60463 1.26765 1.31511 1.14381 1.21848 0.98577 0.89338 0.96025 1.21471 0.99854 0.96665 0.96427 1.21404 0.99112 0.95933 0.97087 1.19040 0.94681 0.94847 0.93002 1.21784 1.36174 1.07574 0.92665 0.92125 1.26048 0.97073 1.01746 0.95347 1.70117 1.48290 1.41092 0.98028 0.85357 0.78126 0.78700 0.78603 1.18505 1.20334 1.20274 0.90505 0.89925 0.90250 0.82460 0.82145 0.81232 0.90745 0.88091 0.91312 0.93153 0.90184 0.95036 0.84108 0.90793 0.95024 0.93057 0.92620 0.92924 0.93139 0.99285 0.99211 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.62 71.24 0.69 -0.51 16 2 C -0.14 -2.14 5.90 -19.77 -0.12 -2.25 16 3 C -0.08 -1.05 9.86 22.46 0.22 -0.83 16 4 C -0.17 -2.11 10.11 22.36 0.23 -1.89 16 5 C 0.07 1.21 11.18 84.69 0.95 2.15 16 6 N -0.51 -11.03 10.27 -183.88 -1.89 -12.92 16 7 C 0.11 2.07 6.03 42.54 0.26 2.33 16 8 C -0.07 -1.10 5.11 29.85 0.15 -0.95 16 9 C -0.10 -1.74 5.46 30.60 0.17 -1.57 16 10 C 0.06 1.22 5.69 86.31 0.49 1.71 16 11 N -0.70 -17.21 6.50 -513.89 -3.34 -20.55 16 12 C 0.07 1.97 5.69 86.30 0.49 2.46 16 13 C -0.11 -3.70 5.47 30.59 0.17 -3.54 16 14 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 15 C 0.02 1.17 4.97 29.85 0.15 1.32 16 16 C -0.54 -31.96 9.11 25.60 0.23 -31.72 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 18 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 19 N -0.93 -58.39 13.29 21.45 0.28 -58.10 16 20 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.60 8.10 -2.39 -0.02 0.58 16 26 H 0.08 0.75 5.95 -2.39 -0.01 0.74 16 27 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 28 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 29 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.26 5.93 -2.39 -0.01 1.24 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.34 8.18 8.73 -89.70 -0.78 7.39 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 44 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 45 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -70.34 368.66 1.93 -68.41 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.15 Total: 13.03 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 4.69 Total: -37.04 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -4.95 Total: -91.57 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -70.34 1.93 -68.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693705974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.201 kcal (2) G-P(sol) polarization free energy of solvation -70.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds