Wall clock time and date at job start Thu Apr 9 2020 14:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46994 * 2 1 4 4 H 1.09000 * 109.47359 * 305.34797 * 3 2 1 5 5 C 1.50696 * 109.47506 * 65.34397 * 3 2 1 6 6 H 1.08007 * 119.99506 * 35.08774 * 5 3 2 7 7 C 1.37872 * 120.00747 * 215.08494 * 5 3 2 8 8 N 1.31523 * 119.99562 * 1.16034 * 7 5 3 9 9 Si 1.86798 * 120.00722 * 181.16450 * 7 5 3 10 10 H 1.48504 * 109.47148 * 89.99467 * 9 7 5 11 11 H 1.48496 * 109.47304 * 210.00205 * 9 7 5 12 12 H 1.48507 * 109.46833 * 329.99873 * 9 7 5 13 13 C 1.50699 * 109.47165 * 185.34778 * 3 2 1 14 14 O 1.20761 * 119.99779 * 269.99804 * 13 3 2 15 15 C 1.50703 * 120.00363 * 89.99846 * 13 3 2 16 16 C 1.52997 * 109.47223 * 194.63134 * 15 13 3 17 17 C 1.53003 * 109.46917 * 180.02562 * 16 15 13 18 18 C 1.52993 * 109.47252 * 59.99677 * 17 16 15 19 19 C 1.53008 * 109.47050 * 60.00249 * 18 17 16 20 20 C 1.53001 * 109.46915 * 299.99590 * 19 18 17 21 21 C 1.53005 * 109.46952 * 300.00031 * 16 15 13 22 22 C 1.52997 * 109.47217 * 300.00028 * 20 19 18 23 23 C 1.53002 * 109.46975 * 74.62613 * 15 13 3 24 24 C 1.52997 * 109.47423 * 300.00013 * 18 17 16 25 25 H 1.09005 * 109.47142 * 293.96136 * 1 2 3 26 26 H 1.08997 * 109.47219 * 53.95856 * 1 2 3 27 27 H 1.09000 * 109.46812 * 173.96114 * 1 2 3 28 28 H 1.08996 * 109.47308 * 240.00160 * 2 1 3 29 29 H 1.09005 * 109.47089 * 119.99546 * 2 1 3 30 30 H 0.97001 * 119.99716 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46400 * 314.63004 * 15 13 3 32 32 H 1.08997 * 109.47215 * 59.99487 * 16 15 13 33 33 H 1.08993 * 109.46927 * 299.99579 * 17 16 15 34 34 H 1.09007 * 109.46705 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.46969 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.46809 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46958 * 59.99984 * 19 18 17 38 38 H 1.08993 * 109.46952 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46710 * 180.02562 * 21 16 15 40 40 H 1.08994 * 109.47405 * 59.99983 * 21 16 15 41 41 H 1.08994 * 109.47690 * 300.00287 * 22 20 19 42 42 H 1.09004 * 109.46931 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.47400 * 300.00710 * 23 15 13 44 44 H 1.08993 * 109.46979 * 300.00235 * 24 18 17 45 45 H 1.09000 * 109.47127 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9833 -0.8382 5 6 1.6487 2.1137 1.2912 6 1 1.6283 1.5465 2.2101 7 6 1.3167 3.4519 1.2997 8 7 1.3195 4.1372 0.1771 9 14 0.8631 4.2917 2.9054 10 1 2.0874 4.8464 3.5370 11 1 -0.0964 5.3922 2.6347 12 1 0.2378 3.3039 3.8212 13 6 3.5412 1.4446 -0.1324 14 8 4.2345 1.4130 0.8558 15 6 4.1772 1.4862 -1.4980 16 6 5.6572 1.1161 -1.3828 17 6 6.3030 1.1589 -2.7692 18 6 6.1734 2.5689 -3.3489 19 6 6.8783 3.5661 -2.4269 20 6 6.2324 3.5233 -1.0406 21 6 6.3621 2.1136 -0.4613 22 6 4.7524 3.8934 -1.1558 23 6 4.0475 2.8960 -2.0783 24 6 4.6934 2.9390 -3.4641 25 1 -0.3634 0.4174 0.9391 26 1 -0.3633 0.6046 -0.8309 27 1 -0.3633 -1.0220 -0.1081 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.0856 5.0785 0.1830 31 1 3.6749 0.7755 -2.1544 32 1 5.7495 0.1118 -0.9694 33 1 5.8010 0.4486 -3.4260 34 1 7.3576 0.8957 -2.6871 35 1 6.6339 2.5994 -4.3364 36 1 6.7863 4.5705 -2.8402 37 1 7.9327 3.3024 -2.3449 38 1 6.7342 4.2340 -0.3840 39 1 7.4166 1.8502 -0.3797 40 1 5.9022 2.0836 0.5263 41 1 4.6600 4.8978 -1.5688 42 1 4.2922 3.8625 -0.1681 43 1 2.9931 3.1596 -2.1603 44 1 4.1913 2.2286 -4.1208 45 1 4.6011 3.9436 -3.8766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693962611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:33 Heat of formation + Delta-G solvation = -80.562298 kcal Electronic energy + Delta-G solvation = -23811.287296 eV Core-core repulsion = 20791.434516 eV Total energy + Delta-G solvation = -3019.852780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20223 -37.77753 -34.29520 -32.26715 -32.12793 -31.96097 -31.76420 -27.69177 -26.02029 -25.35252 -23.87959 -21.67401 -21.01126 -20.90038 -20.33846 -18.38742 -17.04868 -16.38449 -14.95802 -14.67989 -14.47667 -14.27756 -13.93609 -13.76943 -13.44205 -13.12545 -12.90376 -12.78661 -12.67023 -12.38230 -12.00632 -11.91461 -11.80823 -11.43867 -11.08789 -10.95652 -10.83591 -10.74516 -10.46047 -10.42716 -10.40352 -10.37859 -10.15501 -10.08669 -9.46429 -9.25129 -9.16806 -9.13491 -9.02751 -8.58696 -7.69412 -6.06352 -4.05490 3.30053 3.38131 3.38973 3.43123 4.43425 4.85770 4.93449 4.95328 5.20420 5.49878 5.54374 5.57052 5.65209 5.69798 5.71742 5.77860 5.81215 5.87288 5.96167 6.07553 6.10763 6.14477 6.18582 6.23699 6.28215 6.33478 6.35516 6.41921 6.47931 6.51322 6.53874 6.61751 6.67327 6.87160 6.90756 6.94206 6.98891 7.06310 7.11448 7.13990 7.22865 7.38914 7.57452 7.88790 8.28800 8.98220 9.06794 9.56818 11.02739 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.007374 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.174022 B = 3795.998841 C = 4338.922491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.009 4.009 4 H 0.080 0.920 5 C -0.489 4.489 6 H 0.056 0.944 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.376 3.624 14 O -0.465 6.465 15 C -0.131 4.131 16 C -0.069 4.069 17 C -0.106 4.106 18 C -0.084 4.084 19 C -0.105 4.105 20 C -0.086 4.086 21 C -0.127 4.127 22 C -0.102 4.102 23 C -0.063 4.063 24 C -0.106 4.106 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 -3.045 -7.924 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.140 4.140 3 C -0.028 4.028 4 H 0.098 0.902 5 C -0.527 4.527 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.252 3.748 14 O -0.340 6.340 15 C -0.151 4.151 16 C -0.087 4.087 17 C -0.144 4.144 18 C -0.103 4.103 19 C -0.143 4.143 20 C -0.104 4.104 21 C -0.164 4.164 22 C -0.140 4.140 23 C -0.081 4.081 24 C -0.144 4.144 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.213 -2.873 -7.469 10.773 hybrid contribution -0.183 0.657 0.645 0.938 sum 7.031 -2.216 -6.824 10.045 Atomic orbital electron populations 1.21565 0.96058 0.98582 1.02605 1.21375 0.96105 0.97527 0.98974 1.19462 0.89289 0.93046 1.00994 0.90195 1.20784 1.44531 0.94311 0.93108 0.92565 1.24928 0.95025 0.97487 0.96136 1.69876 1.48785 1.08664 1.25349 0.86621 0.78218 0.79190 0.84177 1.20715 1.21347 1.19904 1.25449 0.93765 0.67781 0.87815 1.90034 1.65412 1.36992 1.41532 1.21854 0.95754 0.98433 0.99014 1.20864 0.94242 0.98842 0.94784 1.21547 0.99850 0.96270 0.96691 1.21027 0.96228 0.95209 0.97801 1.21533 0.98382 0.98431 0.95915 1.21044 0.96661 0.97291 0.95406 1.21950 0.98907 0.93464 1.02075 1.21462 0.93834 0.97524 1.01157 1.20795 1.00904 0.93014 0.93415 1.21552 0.94813 1.00784 0.97228 0.91943 0.93347 0.95126 0.94811 0.93413 0.92924 0.90185 0.92040 0.92525 0.92628 0.92185 0.92668 0.92878 0.92303 0.93799 0.87701 0.92959 0.90380 0.89260 0.92424 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.63 37.16 0.36 -2.11 16 2 C -0.10 -2.07 5.37 -26.73 -0.14 -2.22 16 3 C -0.01 -0.21 2.16 -92.93 -0.20 -0.41 16 4 H 0.08 1.99 6.69 -51.93 -0.35 1.64 16 5 C -0.49 -12.98 6.86 -34.44 -0.24 -13.21 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -23.77 12.78 55.43 0.71 -23.07 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.38 8.36 4.09 -29.03 -0.12 8.24 16 14 O -0.47 -11.45 13.19 6.00 0.08 -11.37 16 15 C -0.13 -2.42 2.20 -91.77 -0.20 -2.62 16 16 C -0.07 -1.16 2.49 -90.62 -0.23 -1.38 16 17 C -0.11 -1.48 5.19 -26.73 -0.14 -1.62 16 18 C -0.08 -1.15 3.19 -90.62 -0.29 -1.44 16 19 C -0.11 -1.48 5.19 -26.73 -0.14 -1.62 16 20 C -0.09 -1.44 3.19 -90.64 -0.29 -1.73 16 21 C -0.13 -2.24 4.90 -26.75 -0.13 -2.38 16 22 C -0.10 -1.95 4.98 -26.70 -0.13 -2.09 16 23 C -0.06 -1.13 2.69 -90.61 -0.24 -1.38 16 24 C -0.11 -1.57 5.19 -26.76 -0.14 -1.71 16 25 H 0.06 1.27 7.59 -51.93 -0.39 0.87 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.11 2.20 5.05 -51.93 -0.26 1.94 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.82 7.17 -51.93 -0.37 1.45 16 43 H 0.09 1.82 7.59 -51.93 -0.39 1.43 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -27.00 330.10 -9.71 -36.71 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.08 Total: 2.42 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -2.37 Total: -25.99 kcal Atomic # 7 Polarization: -23.77 SS G_CDS: 0.71 Total: -23.07 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.00 -9.71 -36.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693962611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.855 kcal (2) G-P(sol) polarization free energy of solvation -26.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds