Wall clock time and date at job start Thu Apr 9 2020 14:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46994 * 2 1 4 4 H 1.09000 * 109.47359 * 305.34797 * 3 2 1 5 5 C 1.50696 * 109.47506 * 65.34397 * 3 2 1 6 6 H 1.08007 * 119.99506 * 35.08774 * 5 3 2 7 7 C 1.37872 * 120.00747 * 215.08494 * 5 3 2 8 8 N 1.31523 * 119.99562 * 1.16034 * 7 5 3 9 9 Si 1.86798 * 120.00722 * 181.16450 * 7 5 3 10 10 H 1.48504 * 109.47148 * 89.99467 * 9 7 5 11 11 H 1.48496 * 109.47304 * 210.00205 * 9 7 5 12 12 H 1.48507 * 109.46833 * 329.99873 * 9 7 5 13 13 C 1.50699 * 109.47165 * 185.34778 * 3 2 1 14 14 O 1.20761 * 119.99779 * 269.99804 * 13 3 2 15 15 C 1.50703 * 120.00363 * 89.99846 * 13 3 2 16 16 C 1.52997 * 109.47223 * 194.63134 * 15 13 3 17 17 C 1.53003 * 109.46917 * 180.02562 * 16 15 13 18 18 C 1.52993 * 109.47252 * 59.99677 * 17 16 15 19 19 C 1.53008 * 109.47050 * 60.00249 * 18 17 16 20 20 C 1.53001 * 109.46915 * 299.99590 * 19 18 17 21 21 C 1.53005 * 109.46952 * 300.00031 * 16 15 13 22 22 C 1.52997 * 109.47217 * 300.00028 * 20 19 18 23 23 C 1.53002 * 109.46975 * 74.62613 * 15 13 3 24 24 C 1.52997 * 109.47423 * 300.00013 * 18 17 16 25 25 H 1.09005 * 109.47142 * 293.96136 * 1 2 3 26 26 H 1.08997 * 109.47219 * 53.95856 * 1 2 3 27 27 H 1.09000 * 109.46812 * 173.96114 * 1 2 3 28 28 H 1.08996 * 109.47308 * 240.00160 * 2 1 3 29 29 H 1.09005 * 109.47089 * 119.99546 * 2 1 3 30 30 H 0.97001 * 119.99716 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.46400 * 314.63004 * 15 13 3 32 32 H 1.08997 * 109.47215 * 59.99487 * 16 15 13 33 33 H 1.08993 * 109.46927 * 299.99579 * 17 16 15 34 34 H 1.09007 * 109.46705 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.46969 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.46809 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.46958 * 59.99984 * 19 18 17 38 38 H 1.08993 * 109.46952 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.46710 * 180.02562 * 21 16 15 40 40 H 1.08994 * 109.47405 * 59.99983 * 21 16 15 41 41 H 1.08994 * 109.47690 * 300.00287 * 22 20 19 42 42 H 1.09004 * 109.46931 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.47400 * 300.00710 * 23 15 13 44 44 H 1.08993 * 109.46979 * 300.00235 * 24 18 17 45 45 H 1.09000 * 109.47127 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9833 -0.8382 5 6 1.6487 2.1137 1.2912 6 1 1.6283 1.5465 2.2101 7 6 1.3167 3.4519 1.2997 8 7 1.3195 4.1372 0.1771 9 14 0.8631 4.2917 2.9054 10 1 2.0874 4.8464 3.5370 11 1 -0.0964 5.3922 2.6347 12 1 0.2378 3.3039 3.8212 13 6 3.5412 1.4446 -0.1324 14 8 4.2345 1.4130 0.8558 15 6 4.1772 1.4862 -1.4980 16 6 5.6572 1.1161 -1.3828 17 6 6.3030 1.1589 -2.7692 18 6 6.1734 2.5689 -3.3489 19 6 6.8783 3.5661 -2.4269 20 6 6.2324 3.5233 -1.0406 21 6 6.3621 2.1136 -0.4613 22 6 4.7524 3.8934 -1.1558 23 6 4.0475 2.8960 -2.0783 24 6 4.6934 2.9390 -3.4641 25 1 -0.3634 0.4174 0.9391 26 1 -0.3633 0.6046 -0.8309 27 1 -0.3633 -1.0220 -0.1081 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.0856 5.0785 0.1830 31 1 3.6749 0.7755 -2.1544 32 1 5.7495 0.1118 -0.9694 33 1 5.8010 0.4486 -3.4260 34 1 7.3576 0.8957 -2.6871 35 1 6.6339 2.5994 -4.3364 36 1 6.7863 4.5705 -2.8402 37 1 7.9327 3.3024 -2.3449 38 1 6.7342 4.2340 -0.3840 39 1 7.4166 1.8502 -0.3797 40 1 5.9022 2.0836 0.5263 41 1 4.6600 4.8978 -1.5688 42 1 4.2922 3.8625 -0.1681 43 1 2.9931 3.1596 -2.1603 44 1 4.1913 2.2286 -4.1208 45 1 4.6011 3.9436 -3.8766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693962611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:32 Heat of formation + Delta-G solvation = -92.282768 kcal Electronic energy + Delta-G solvation = -23811.795533 eV Core-core repulsion = 20791.434516 eV Total energy + Delta-G solvation = -3020.361017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.58329 -39.48319 -36.13390 -33.87320 -33.52652 -33.41554 -33.23637 -29.41047 -27.59167 -26.64690 -25.68971 -23.09971 -22.41126 -22.18114 -21.87809 -20.05858 -18.62031 -18.25183 -16.73337 -16.32631 -15.96092 -15.82066 -15.44380 -15.19269 -15.01025 -14.60216 -14.38189 -14.20557 -14.07990 -13.82175 -13.54026 -13.32160 -13.21423 -13.13699 -12.91212 -12.85980 -12.49487 -12.29650 -12.14267 -11.92607 -11.68543 -11.65924 -11.60988 -11.52899 -11.14504 -11.05407 -10.81971 -10.58916 -10.47443 -10.43328 -9.41314 -8.13961 -6.16829 1.33231 1.37202 1.44511 1.62845 2.40833 3.12618 3.56313 3.68311 3.69020 4.02286 4.21604 4.29708 4.36824 4.40170 4.44144 4.45306 4.47705 4.56396 4.57167 4.59564 4.65400 4.70045 4.88103 4.92895 4.98021 5.05071 5.05331 5.15064 5.18229 5.20341 5.22640 5.26915 5.27481 5.31888 5.32996 5.46126 5.52118 5.58892 5.62154 5.68244 5.69396 5.71871 5.78156 5.87017 6.29116 6.88764 7.29711 7.45879 8.93365 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.007374 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.174022 B = 3795.998841 C = 4338.922491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 C -0.014 4.014 4 H 0.063 0.937 5 C -0.503 4.503 6 H 0.036 0.964 7 C 0.026 3.974 8 N -0.901 5.901 9 Si 0.934 3.066 10 H -0.289 1.289 11 H -0.277 1.277 12 H -0.271 1.271 13 C 0.372 3.628 14 O -0.497 6.497 15 C -0.126 4.126 16 C -0.068 4.068 17 C -0.100 4.100 18 C -0.081 4.081 19 C -0.100 4.100 20 C -0.085 4.085 21 C -0.127 4.127 22 C -0.098 4.098 23 C -0.059 4.059 24 C -0.101 4.101 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.022 0.978 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.344 -3.894 -10.578 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.138 4.138 3 C -0.033 4.033 4 H 0.081 0.919 5 C -0.541 4.541 6 H 0.054 0.946 7 C -0.174 4.174 8 N -0.540 5.540 9 Si 0.762 3.238 10 H -0.216 1.216 11 H -0.202 1.202 12 H -0.196 1.196 13 C 0.250 3.750 14 O -0.374 6.374 15 C -0.145 4.145 16 C -0.087 4.087 17 C -0.137 4.137 18 C -0.099 4.099 19 C -0.137 4.137 20 C -0.103 4.103 21 C -0.164 4.164 22 C -0.136 4.136 23 C -0.078 4.078 24 C -0.138 4.138 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.651 -3.727 -10.130 13.833 hybrid contribution -0.674 0.925 1.562 1.937 sum 7.977 -2.802 -8.569 12.038 Atomic orbital electron populations 1.21499 0.94892 1.00547 1.01256 1.21355 0.97179 0.95497 0.99769 1.19474 0.90631 0.94548 0.98680 0.91886 1.20932 1.44784 0.94677 0.93715 0.94603 1.25467 0.95431 0.98040 0.98436 1.69952 1.49242 1.08585 1.26223 0.85918 0.77715 0.78622 0.81593 1.21579 1.20209 1.19578 1.25650 0.93202 0.66629 0.89476 1.90047 1.65788 1.38439 1.43097 1.21803 0.97187 0.99239 0.96296 1.20876 0.92824 0.98014 0.96943 1.21539 1.00842 0.97023 0.94330 1.21081 0.95039 0.94565 0.99264 1.21516 0.99181 0.99493 0.93528 1.21032 0.94952 0.96564 0.97795 1.21859 0.99725 0.94531 1.00326 1.21364 0.95605 0.98216 0.98403 1.20719 0.99293 0.92130 0.95621 1.21539 0.95817 1.01993 0.94501 0.94194 0.93587 0.91621 0.91958 0.94471 0.93049 0.88363 0.92524 0.90715 0.90672 0.88730 0.91705 0.90850 0.92849 0.91863 0.91908 0.92921 0.95922 0.92532 0.90663 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 9.63 71.98 0.69 -3.97 16 2 C -0.10 -4.09 5.37 30.60 0.16 -3.92 16 3 C -0.01 -0.69 2.16 -12.29 -0.03 -0.71 16 4 H 0.06 3.26 6.69 -2.39 -0.02 3.24 16 5 C -0.50 -27.97 6.86 25.60 0.18 -27.79 16 6 H 0.04 2.08 7.81 -2.91 -0.02 2.06 16 7 C 0.03 1.47 5.46 84.65 0.46 1.93 16 8 N -0.90 -50.22 12.78 21.45 0.27 -49.94 16 9 Si 0.93 45.24 29.54 68.60 2.03 47.27 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.37 17.12 4.09 29.10 0.12 17.23 16 14 O -0.50 -25.76 13.19 -1.45 -0.02 -25.78 16 15 C -0.13 -4.57 2.20 -11.54 -0.03 -4.60 16 16 C -0.07 -2.16 2.49 -10.79 -0.03 -2.19 16 17 C -0.10 -2.31 5.19 30.59 0.16 -2.15 16 18 C -0.08 -1.82 3.19 -10.79 -0.03 -1.85 16 19 C -0.10 -2.44 5.19 30.60 0.16 -2.28 16 20 C -0.08 -2.79 3.19 -10.81 -0.03 -2.83 16 21 C -0.13 -4.44 4.90 30.58 0.15 -4.29 16 22 C -0.10 -3.85 4.98 30.61 0.15 -3.70 16 23 C -0.06 -2.11 2.69 -10.79 -0.03 -2.14 16 24 C -0.10 -2.65 5.19 30.58 0.16 -2.49 16 25 H 0.04 1.64 7.59 -2.38 -0.02 1.62 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.10 3.17 8.14 -2.39 -0.02 3.16 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.75 5.05 -2.39 -0.01 2.74 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.02 1.11 7.17 -2.39 -0.02 1.09 16 43 H 0.06 2.37 7.59 -2.39 -0.02 2.36 16 44 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -62.28 330.10 5.43 -56.84 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.94 Total: 17.35 kcal Atomic # 6 Polarization: -47.96 SS G_CDS: 2.22 Total: -45.74 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.27 Total: -49.94 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.02 Total: -25.78 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -62.28 5.43 -56.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693962611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.438 kcal (2) G-P(sol) polarization free energy of solvation -62.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds