Wall clock time and date at job start Thu Apr 9 2020 14:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47118 * 2 1 4 4 C 1.52996 * 109.47528 * 300.00701 * 3 2 1 5 5 C 1.53002 * 109.46916 * 60.00283 * 3 2 1 6 6 C 1.50698 * 109.47395 * 180.02562 * 3 2 1 7 7 C 1.38266 * 119.94104 * 359.73067 * 6 3 2 8 8 C 1.38149 * 120.05184 * 179.72756 * 7 6 3 9 9 C 1.38730 * 119.94439 * 0.54207 * 8 7 6 10 10 O 1.35897 * 120.05393 * 179.75105 * 9 8 7 11 11 C 1.42900 * 116.99932 * 185.43298 * 10 9 8 12 12 H 1.08999 * 109.47524 * 35.08705 * 11 10 9 13 13 C 1.53001 * 109.46933 * 275.08816 * 11 10 9 14 14 C 1.53004 * 109.47520 * 155.09043 * 11 10 9 15 15 C 1.50694 * 109.46868 * 295.00174 * 14 11 10 16 16 H 1.08003 * 120.00449 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00172 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99471 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00132 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47419 * 60.00101 * 19 17 15 21 21 H 1.48505 * 109.47208 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46991 * 299.99643 * 19 17 15 23 23 C 1.38729 * 119.89016 * 359.73216 * 9 8 7 24 24 C 1.38143 * 119.94117 * 359.97438 * 23 9 8 25 25 H 1.09005 * 109.46833 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46809 * 299.99286 * 1 2 3 27 27 H 1.08989 * 109.47359 * 60.00061 * 1 2 3 28 28 H 1.09000 * 109.47367 * 240.00205 * 2 1 3 29 29 H 1.09004 * 109.47407 * 120.00421 * 2 1 3 30 30 H 1.08998 * 109.47360 * 59.99172 * 4 3 2 31 31 H 1.08995 * 109.47390 * 180.02562 * 4 3 2 32 32 H 1.09011 * 109.46563 * 299.99845 * 4 3 2 33 33 H 1.09000 * 109.47339 * 59.99653 * 5 3 2 34 34 H 1.09003 * 109.47615 * 179.97438 * 5 3 2 35 35 H 1.09007 * 109.47289 * 300.00301 * 5 3 2 36 36 H 1.07995 * 119.97577 * 359.97438 * 7 6 3 37 37 H 1.08003 * 120.02454 * 180.27324 * 8 7 6 38 38 H 1.08999 * 109.47605 * 299.99939 * 13 11 10 39 39 H 1.09003 * 109.47077 * 59.99943 * 13 11 10 40 40 H 1.09001 * 109.47477 * 180.02562 * 13 11 10 41 41 H 1.09005 * 109.46973 * 54.99704 * 14 11 10 42 42 H 1.08997 * 109.47113 * 174.99887 * 14 11 10 43 43 H 0.96997 * 119.99630 * 180.02562 * 18 17 15 44 44 H 1.07996 * 120.02949 * 180.02562 * 23 9 8 45 45 H 1.08005 * 119.97216 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2491 5 6 1.5300 2.1637 1.2493 6 6 3.5470 1.4425 -0.0006 7 6 4.2371 0.2445 0.0045 8 6 5.6186 0.2418 -0.0017 9 6 6.3134 1.4426 -0.0018 10 8 7.6723 1.4426 -0.0029 11 6 8.3212 2.7101 0.1177 12 1 7.7374 3.3563 0.7732 13 6 8.4376 3.3568 -1.2641 14 6 9.7189 2.5136 0.7081 15 6 9.6002 1.9909 2.1166 16 1 8.6254 1.8168 2.5476 17 6 10.7362 1.7350 2.8550 18 7 11.9232 1.9466 2.3299 19 14 10.5890 1.0879 4.6011 20 1 9.8691 -0.2109 4.5887 21 1 11.9456 0.8970 5.1742 22 1 9.8354 2.0637 5.4288 23 6 5.6186 2.6434 -0.0013 24 6 4.2371 2.6406 -0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.4399 2.1638 -1.2491 31 1 1.8936 3.1913 -1.2493 32 1 1.8932 1.6500 -2.1392 33 1 1.8933 1.6498 2.1393 34 1 1.8937 3.1912 1.2497 35 1 0.4399 2.1636 1.2494 36 1 3.6958 -0.6900 0.0094 37 1 6.1572 -0.6943 -0.0022 38 1 9.0214 2.7107 -1.9197 39 1 7.4419 3.4969 -1.6848 40 1 8.9330 4.3234 -1.1723 41 1 10.2727 1.7978 0.1005 42 1 10.2467 3.4672 0.7177 43 1 12.7223 1.7662 2.8493 44 1 6.1571 3.5794 -0.0018 45 1 3.6957 3.5751 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695841156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:37 Heat of formation + Delta-G solvation = -44.426787 kcal Electronic energy + Delta-G solvation = -21548.357769 eV Core-core repulsion = 18530.071943 eV Total energy + Delta-G solvation = -3018.285826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09659 -38.54703 -35.99837 -33.39868 -31.76874 -30.96163 -30.31680 -28.36949 -27.45609 -27.35754 -24.62053 -23.45056 -22.53781 -21.61192 -20.03128 -18.65347 -17.77724 -16.35498 -15.96923 -15.31877 -14.85769 -14.65203 -14.49384 -14.23266 -14.07485 -13.52191 -13.39414 -13.25039 -12.78416 -12.63371 -12.13153 -12.09227 -11.95226 -11.86181 -11.80210 -11.70484 -11.38199 -11.30742 -11.08999 -10.84156 -10.73578 -10.67170 -10.49947 -10.41483 -10.22035 -9.90709 -9.35871 -9.10462 -8.66730 -8.37690 -7.55588 -6.00906 -4.02199 1.66812 1.80325 3.35126 3.38714 3.42617 3.96534 4.10998 4.46924 4.59801 4.64819 4.85493 5.16008 5.21779 5.24291 5.26342 5.32605 5.36174 5.45778 5.57758 5.58328 5.68072 5.71619 5.75649 5.78954 5.81965 5.85787 5.88992 5.90013 5.97753 6.03659 6.07827 6.24298 6.26554 6.29398 6.33975 6.58369 6.65319 6.71349 6.86518 6.89544 7.13981 7.51363 7.60897 7.95701 8.20701 8.38175 9.01279 9.61014 11.10570 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.003892 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.813725 B = 7193.089743 C = 7842.043696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.016 4.016 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.128 4.128 7 C -0.083 4.083 8 C -0.161 4.161 9 C 0.148 3.852 10 O -0.292 6.292 11 C 0.087 3.913 12 H 0.062 0.938 13 C -0.177 4.177 14 C 0.026 3.974 15 C -0.514 4.514 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.897 5.897 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.213 4.213 24 C -0.075 4.075 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.038 0.962 43 H 0.261 0.739 44 H 0.128 0.872 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.854 -0.048 -6.602 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.016 4.016 4 C -0.196 4.196 5 C -0.197 4.197 6 C -0.129 4.129 7 C -0.101 4.101 8 C -0.180 4.180 9 C 0.101 3.899 10 O -0.205 6.205 11 C 0.031 3.969 12 H 0.080 0.920 13 C -0.235 4.235 14 C -0.011 4.011 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.537 5.537 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.232 4.232 24 C -0.094 4.094 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.146 0.854 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.500 -0.210 -6.577 21.531 hybrid contribution 0.107 -0.102 1.007 1.018 sum -20.394 -0.311 -5.570 21.143 Atomic orbital electron populations 1.21911 0.96078 1.01361 1.01962 1.21662 0.95591 0.95931 1.02148 1.19346 0.91042 0.95538 0.95666 1.21937 1.00481 1.00186 0.97012 1.21949 1.00458 1.00248 0.97076 1.19513 0.94250 0.93109 1.05979 1.20862 0.92902 0.97663 0.98660 1.20458 0.93638 0.96618 1.07303 1.19243 0.84210 0.93664 0.92812 1.86274 1.14311 1.34069 1.85810 1.22848 0.97098 0.82127 0.94808 0.92035 1.22412 1.01298 1.01343 0.98408 1.19260 0.87644 0.98259 0.95940 1.21090 0.92568 1.43510 0.98064 0.92669 1.24978 0.95322 0.95660 0.98383 1.69942 0.97365 1.49076 1.37295 0.86637 0.77027 0.79619 0.84645 1.20157 1.21263 1.20261 1.21338 0.94993 0.97755 1.09134 1.20655 0.93182 0.97279 0.98237 0.93050 0.92473 0.92517 0.91699 0.91635 0.92451 0.92674 0.92644 0.92537 0.92642 0.92449 0.85735 0.85570 0.91960 0.93299 0.91450 0.95318 0.94426 0.92892 0.85399 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.21 37.16 0.34 -0.84 16 2 C -0.12 -1.06 3.65 -26.73 -0.10 -1.15 16 3 C -0.02 -0.16 0.63 -155.66 -0.10 -0.26 16 4 C -0.14 -1.27 7.93 37.16 0.29 -0.98 16 5 C -0.14 -1.35 7.93 37.16 0.29 -1.06 16 6 C -0.13 -1.68 4.76 -104.60 -0.50 -2.18 16 7 C -0.08 -1.15 8.97 -39.60 -0.36 -1.51 16 8 C -0.16 -2.70 9.99 -39.43 -0.39 -3.09 16 9 C 0.15 2.77 6.60 -39.22 -0.26 2.51 16 10 O -0.29 -6.39 9.55 -19.42 -0.19 -6.58 16 11 C 0.09 1.83 2.17 -26.73 -0.06 1.78 16 12 H 0.06 1.27 6.31 -51.93 -0.33 0.95 16 13 C -0.18 -3.07 9.17 37.16 0.34 -2.73 16 14 C 0.03 0.67 4.68 -27.88 -0.13 0.53 16 15 C -0.51 -14.73 8.88 -34.44 -0.31 -15.04 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.21 -3.52 8.24 -39.43 -0.32 -3.85 16 24 C -0.08 -1.06 8.70 -39.61 -0.34 -1.40 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 27 H 0.06 0.40 6.43 -51.94 -0.33 0.07 16 28 H 0.06 0.59 7.52 -51.93 -0.39 0.20 16 29 H 0.06 0.62 7.50 -51.93 -0.39 0.23 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 31 H 0.05 0.50 7.38 -51.93 -0.38 0.12 16 32 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.54 7.38 -51.93 -0.38 0.15 16 35 H 0.06 0.47 6.43 -51.92 -0.33 0.13 16 36 H 0.12 1.44 5.89 -52.49 -0.31 1.13 16 37 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.76 6.91 -51.93 -0.36 0.40 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.13 2.04 5.43 -52.49 -0.28 1.76 16 45 H 0.12 1.37 7.09 -52.48 -0.37 1.00 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -30.42 348.90 -8.36 -38.78 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.46 Total: -0.59 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -1.69 Total: -27.69 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.25 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.19 Total: -6.58 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.42 -8.36 -38.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.644 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds