Wall clock time and date at job start Thu Apr 9 2020 14:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47118 * 2 1 4 4 C 1.52996 * 109.47528 * 300.00701 * 3 2 1 5 5 C 1.53002 * 109.46916 * 60.00283 * 3 2 1 6 6 C 1.50698 * 109.47395 * 180.02562 * 3 2 1 7 7 C 1.38266 * 119.94104 * 359.73067 * 6 3 2 8 8 C 1.38149 * 120.05184 * 179.72756 * 7 6 3 9 9 C 1.38730 * 119.94439 * 0.54207 * 8 7 6 10 10 O 1.35897 * 120.05393 * 179.75105 * 9 8 7 11 11 C 1.42900 * 116.99932 * 185.43298 * 10 9 8 12 12 H 1.08999 * 109.47524 * 35.08705 * 11 10 9 13 13 C 1.53001 * 109.46933 * 275.08816 * 11 10 9 14 14 C 1.53004 * 109.47520 * 155.09043 * 11 10 9 15 15 C 1.50694 * 109.46868 * 295.00174 * 14 11 10 16 16 H 1.08003 * 120.00449 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00172 * 179.97438 * 15 14 11 18 18 N 1.31515 * 119.99471 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00132 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47419 * 60.00101 * 19 17 15 21 21 H 1.48505 * 109.47208 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46991 * 299.99643 * 19 17 15 23 23 C 1.38729 * 119.89016 * 359.73216 * 9 8 7 24 24 C 1.38143 * 119.94117 * 359.97438 * 23 9 8 25 25 H 1.09005 * 109.46833 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46809 * 299.99286 * 1 2 3 27 27 H 1.08989 * 109.47359 * 60.00061 * 1 2 3 28 28 H 1.09000 * 109.47367 * 240.00205 * 2 1 3 29 29 H 1.09004 * 109.47407 * 120.00421 * 2 1 3 30 30 H 1.08998 * 109.47360 * 59.99172 * 4 3 2 31 31 H 1.08995 * 109.47390 * 180.02562 * 4 3 2 32 32 H 1.09011 * 109.46563 * 299.99845 * 4 3 2 33 33 H 1.09000 * 109.47339 * 59.99653 * 5 3 2 34 34 H 1.09003 * 109.47615 * 179.97438 * 5 3 2 35 35 H 1.09007 * 109.47289 * 300.00301 * 5 3 2 36 36 H 1.07995 * 119.97577 * 359.97438 * 7 6 3 37 37 H 1.08003 * 120.02454 * 180.27324 * 8 7 6 38 38 H 1.08999 * 109.47605 * 299.99939 * 13 11 10 39 39 H 1.09003 * 109.47077 * 59.99943 * 13 11 10 40 40 H 1.09001 * 109.47477 * 180.02562 * 13 11 10 41 41 H 1.09005 * 109.46973 * 54.99704 * 14 11 10 42 42 H 1.08997 * 109.47113 * 174.99887 * 14 11 10 43 43 H 0.96997 * 119.99630 * 180.02562 * 18 17 15 44 44 H 1.07996 * 120.02949 * 180.02562 * 23 9 8 45 45 H 1.08005 * 119.97216 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2491 5 6 1.5300 2.1637 1.2493 6 6 3.5470 1.4425 -0.0006 7 6 4.2371 0.2445 0.0045 8 6 5.6186 0.2418 -0.0017 9 6 6.3134 1.4426 -0.0018 10 8 7.6723 1.4426 -0.0029 11 6 8.3212 2.7101 0.1177 12 1 7.7374 3.3563 0.7732 13 6 8.4376 3.3568 -1.2641 14 6 9.7189 2.5136 0.7081 15 6 9.6002 1.9909 2.1166 16 1 8.6254 1.8168 2.5476 17 6 10.7362 1.7350 2.8550 18 7 11.9232 1.9466 2.3299 19 14 10.5890 1.0879 4.6011 20 1 9.8691 -0.2109 4.5887 21 1 11.9456 0.8970 5.1742 22 1 9.8354 2.0637 5.4288 23 6 5.6186 2.6434 -0.0013 24 6 4.2371 2.6406 -0.0011 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.4399 2.1638 -1.2491 31 1 1.8936 3.1913 -1.2493 32 1 1.8932 1.6500 -2.1392 33 1 1.8933 1.6498 2.1393 34 1 1.8937 3.1912 1.2497 35 1 0.4399 2.1636 1.2494 36 1 3.6958 -0.6900 0.0094 37 1 6.1572 -0.6943 -0.0022 38 1 9.0214 2.7107 -1.9197 39 1 7.4419 3.4969 -1.6848 40 1 8.9330 4.3234 -1.1723 41 1 10.2727 1.7978 0.1005 42 1 10.2467 3.4672 0.7177 43 1 12.7223 1.7662 2.8493 44 1 6.1571 3.5794 -0.0018 45 1 3.6957 3.5751 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695841156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:36 Heat of formation + Delta-G solvation = -59.189668 kcal Electronic energy + Delta-G solvation = -21548.997936 eV Core-core repulsion = 18530.071943 eV Total energy + Delta-G solvation = -3018.925993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32920 -39.76998 -37.14187 -35.38172 -33.48073 -32.12763 -31.29515 -29.44128 -29.38589 -28.07682 -25.58285 -25.21034 -23.98410 -22.68731 -21.57008 -19.59768 -19.18840 -18.54204 -17.13799 -16.65970 -16.35930 -16.01080 -15.60053 -15.51558 -15.15706 -14.74404 -14.40449 -14.27833 -14.22964 -13.82485 -13.72998 -13.51139 -13.38262 -13.08940 -12.81059 -12.75096 -12.67697 -12.60221 -12.54279 -12.35731 -12.04036 -11.90267 -11.73328 -11.40508 -11.39260 -11.34291 -11.07805 -11.01805 -10.60631 -9.87170 -8.86202 -8.23242 -6.32584 0.46179 0.57350 1.36266 1.39416 1.47475 2.38422 2.49905 2.88401 3.11115 3.74740 3.80386 3.96014 4.08878 4.13435 4.13980 4.22257 4.38326 4.43193 4.47800 4.58087 4.58932 4.63818 4.76623 4.79900 4.87976 4.90063 4.99043 5.00672 5.09526 5.14350 5.16890 5.20254 5.22774 5.23292 5.31785 5.35224 5.44521 5.49929 5.55852 5.57980 5.63217 5.73802 5.79869 6.00939 6.17104 6.73084 6.79679 7.34862 8.88409 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.003892 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.813725 B = 7193.089743 C = 7842.043696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.015 4.015 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.117 4.117 7 C -0.081 4.081 8 C -0.177 4.177 9 C 0.109 3.891 10 O -0.325 6.325 11 C 0.095 3.905 12 H 0.063 0.937 13 C -0.166 4.166 14 C 0.029 3.971 15 C -0.533 4.533 16 H 0.049 0.951 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.960 3.040 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.219 4.219 24 C -0.075 4.075 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.081 0.919 41 H -0.003 1.003 42 H 0.025 0.975 43 H 0.265 0.735 44 H 0.130 0.870 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.889 0.173 -6.255 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.015 4.015 4 C -0.195 4.195 5 C -0.197 4.197 6 C -0.117 4.117 7 C -0.098 4.098 8 C -0.196 4.196 9 C 0.063 3.937 10 O -0.239 6.239 11 C 0.040 3.960 12 H 0.081 0.919 13 C -0.223 4.223 14 C -0.008 4.008 15 C -0.571 4.571 16 H 0.067 0.933 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.785 3.215 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.238 4.238 24 C -0.093 4.093 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.167 0.833 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.016 0.984 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.556 0.017 -6.238 24.368 hybrid contribution 0.936 -0.204 0.872 1.295 sum -22.621 -0.187 -5.366 23.249 Atomic orbital electron populations 1.21887 0.94613 1.02015 1.02488 1.21670 0.96899 0.94997 1.01918 1.19423 0.88678 0.96717 0.96683 1.21933 1.01685 0.99903 0.95969 1.21955 1.01734 0.99912 0.96115 1.19960 0.96196 0.92388 1.03186 1.21156 0.91760 0.99303 0.97607 1.20648 0.94930 0.95967 1.08009 1.19547 0.82984 0.95332 0.95802 1.86175 1.16476 1.34167 1.87077 1.22545 0.94303 0.82480 0.96707 0.91891 1.22302 1.02674 1.01391 0.95981 1.19112 0.90449 0.96444 0.94817 1.21418 0.92442 1.43790 0.99489 0.93292 1.25868 0.94916 0.95786 1.02828 1.70057 0.98084 1.49903 1.39027 0.85576 0.77481 0.79062 0.79420 1.19852 1.20263 1.19057 1.21438 0.96118 0.96948 1.09283 1.20960 0.92261 0.98853 0.97216 0.92457 0.92065 0.91812 0.91733 0.92125 0.90607 0.92579 0.93112 0.93554 0.92637 0.90517 0.83308 0.86097 0.92580 0.91119 0.90015 0.98412 0.95649 0.92604 0.85259 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.21 71.98 0.66 -1.14 16 2 C -0.12 -1.80 3.65 30.59 0.11 -1.69 16 3 C -0.02 -0.26 0.63 -52.93 -0.03 -0.29 16 4 C -0.14 -2.06 7.93 71.98 0.57 -1.49 16 5 C -0.14 -2.27 7.93 71.98 0.57 -1.70 16 6 C -0.12 -2.82 4.76 -19.85 -0.09 -2.91 16 7 C -0.08 -2.14 8.97 22.26 0.20 -1.94 16 8 C -0.18 -5.98 9.99 22.37 0.22 -5.75 16 9 C 0.11 4.17 6.60 22.51 0.15 4.32 16 10 O -0.32 -14.80 9.55 -92.39 -0.88 -15.68 16 11 C 0.10 4.16 2.17 30.60 0.07 4.22 16 12 H 0.06 2.67 6.31 -2.39 -0.02 2.66 16 13 C -0.17 -5.79 9.17 71.98 0.66 -5.13 16 14 C 0.03 1.55 4.68 29.85 0.14 1.69 16 15 C -0.53 -31.54 8.88 25.60 0.23 -31.32 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C 0.00 0.23 5.46 84.66 0.46 0.70 16 18 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 19 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C -0.22 -7.12 8.24 22.36 0.18 -6.94 16 24 C -0.08 -1.96 8.70 22.25 0.19 -1.77 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.68 6.43 -2.39 -0.02 0.66 16 27 H 0.06 0.67 6.43 -2.39 -0.02 0.65 16 28 H 0.06 1.00 7.52 -2.39 -0.02 0.98 16 29 H 0.06 0.99 7.50 -2.38 -0.02 0.98 16 30 H 0.08 0.88 6.43 -2.39 -0.02 0.86 16 31 H 0.06 0.84 7.38 -2.39 -0.02 0.82 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.90 7.38 -2.39 -0.02 0.88 16 35 H 0.08 0.96 6.43 -2.38 -0.02 0.95 16 36 H 0.15 3.15 5.89 -2.91 -0.02 3.14 16 37 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 2.13 6.91 -2.39 -0.02 2.12 16 40 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 42 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.13 4.06 5.43 -2.91 -0.02 4.04 16 45 H 0.14 2.93 7.09 -2.91 -0.02 2.91 16 Total: -1.00 -67.16 348.90 6.67 -60.48 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.95 Total: 15.54 kcal Atomic # 6 Polarization: -55.44 SS G_CDS: 4.29 Total: -51.14 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.28 Total: -56.99 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.88 Total: -15.68 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -67.16 6.67 -60.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.294 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds