Wall clock time and date at job start Thu Apr 9 2020 14:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46815 * 2 1 4 4 C 1.52996 * 109.47301 * 60.00058 * 3 2 1 5 5 C 1.52998 * 109.47161 * 300.00088 * 3 2 1 6 6 C 1.50699 * 109.46902 * 180.02562 * 3 2 1 7 7 C 1.38264 * 119.94400 * 180.02562 * 6 3 2 8 8 C 1.38146 * 120.05629 * 180.02562 * 7 6 3 9 9 C 1.38731 * 119.94313 * 359.97438 * 8 7 6 10 10 O 1.35900 * 120.05604 * 180.02562 * 9 8 7 11 11 C 1.42907 * 116.99926 * 354.56595 * 10 9 8 12 12 H 1.09005 * 109.47141 * 324.91775 * 11 10 9 13 13 C 1.53000 * 109.47165 * 84.91775 * 11 10 9 14 14 C 1.53000 * 109.46818 * 204.91831 * 11 10 9 15 15 C 1.50699 * 109.47059 * 65.00035 * 14 11 10 16 16 H 1.08002 * 120.00618 * 359.97438 * 15 14 11 17 17 C 1.37880 * 120.00050 * 179.97438 * 15 14 11 18 18 N 1.31518 * 120.00041 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00312 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46887 * 90.00356 * 19 17 15 21 21 H 1.48503 * 109.47194 * 210.00279 * 19 17 15 22 22 H 1.48501 * 109.46990 * 330.00392 * 19 17 15 23 23 C 1.38732 * 119.88951 * 0.27748 * 9 8 7 24 24 C 1.38144 * 119.93940 * 359.47257 * 23 9 8 25 25 H 1.09002 * 109.47141 * 299.99946 * 1 2 3 26 26 H 1.09000 * 109.47171 * 60.00159 * 1 2 3 27 27 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47141 * 240.00054 * 2 1 3 29 29 H 1.08993 * 109.47111 * 120.00185 * 2 1 3 30 30 H 1.09002 * 109.47326 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47222 * 299.99756 * 4 3 2 32 32 H 1.09000 * 109.47186 * 59.99852 * 4 3 2 33 33 H 1.09002 * 109.47065 * 300.00112 * 5 3 2 34 34 H 1.08997 * 109.47159 * 59.99923 * 5 3 2 35 35 H 1.08998 * 109.46969 * 180.02562 * 5 3 2 36 36 H 1.08005 * 119.97301 * 359.97438 * 7 6 3 37 37 H 1.07999 * 120.02654 * 179.97438 * 8 7 6 38 38 H 1.09006 * 109.46903 * 180.02562 * 13 11 10 39 39 H 1.08997 * 109.47024 * 300.00049 * 13 11 10 40 40 H 1.08995 * 109.46746 * 60.00421 * 13 11 10 41 41 H 1.09005 * 109.46980 * 184.99309 * 14 11 10 42 42 H 1.08993 * 109.47581 * 304.99458 * 14 11 10 43 43 H 0.97000 * 120.00322 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.02916 * 179.71674 * 23 9 8 45 45 H 1.08004 * 119.96964 * 180.23003 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5299 2.1638 -1.2492 6 6 3.5469 1.4426 -0.0006 7 6 4.2371 2.6406 -0.0002 8 6 5.6185 2.6434 -0.0013 9 6 6.3134 1.4426 -0.0023 10 8 7.6724 1.4426 -0.0029 11 6 8.3211 2.7103 -0.1230 12 1 7.7364 3.3571 -0.7772 13 6 8.4393 3.3557 1.2592 14 6 9.7180 2.5142 -0.7155 15 6 9.5974 1.9929 -2.1244 16 1 8.6220 1.8185 -2.5541 17 6 10.7323 1.7386 -2.8649 18 7 11.9201 1.9505 -2.3416 19 14 10.5829 1.0918 -4.6110 20 1 10.5215 2.2338 -5.5582 21 1 11.7627 0.2479 -4.9289 22 1 9.3458 0.2797 -4.7338 23 6 5.6186 0.2418 -0.0080 24 6 4.2372 0.2445 -0.0017 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8936 3.1913 1.2494 31 1 0.4399 2.1638 1.2492 32 1 1.8933 1.6500 2.1392 33 1 1.8933 1.6499 -2.1392 34 1 0.4399 2.1637 -1.2492 35 1 1.8936 3.1913 -1.2494 36 1 3.6957 3.5752 0.0002 37 1 6.1571 3.5795 -0.0014 38 1 8.9337 4.3228 1.1674 39 1 7.4442 3.4953 1.6813 40 1 9.0240 2.7089 1.9132 41 1 10.2458 3.4678 -0.7250 42 1 10.2726 1.7980 -0.1094 43 1 12.7186 1.7712 -2.8623 44 1 6.1572 -0.6942 -0.0135 45 1 3.6958 -0.6900 -0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695841162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:39 Heat of formation + Delta-G solvation = -44.462959 kcal Electronic energy + Delta-G solvation = -21549.056506 eV Core-core repulsion = 18530.769112 eV Total energy + Delta-G solvation = -3018.287395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09576 -38.54599 -35.99781 -33.39878 -31.76857 -30.96144 -30.31584 -28.36906 -27.45714 -27.35760 -24.62002 -23.45146 -22.53774 -21.61154 -20.03161 -18.65317 -17.77655 -16.35765 -15.96850 -15.31974 -14.85712 -14.65038 -14.49310 -14.22795 -14.07522 -13.52169 -13.39339 -13.25171 -12.78495 -12.63486 -12.13301 -12.09115 -11.95473 -11.86351 -11.80015 -11.70394 -11.38421 -11.30842 -11.08881 -10.83933 -10.74485 -10.67346 -10.49839 -10.40192 -10.21655 -9.91140 -9.35875 -9.09433 -8.66684 -8.38162 -7.55533 -6.01095 -4.02316 1.66886 1.80382 3.32999 3.39170 3.44533 3.96720 4.10967 4.46899 4.59846 4.64830 4.85543 5.16072 5.21809 5.24316 5.26359 5.32632 5.36076 5.45811 5.57759 5.58354 5.68118 5.71641 5.75639 5.78982 5.81990 5.85799 5.89005 5.90069 5.97798 6.03679 6.07853 6.24334 6.26588 6.29457 6.34046 6.58327 6.65355 6.71354 6.86551 6.89600 7.14022 7.51315 7.60964 7.95656 8.20694 8.38084 9.01421 9.60987 11.10381 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.003892 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.012224 B = 7192.383482 C = 7841.560649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.016 4.016 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.128 4.128 7 C -0.076 4.076 8 C -0.213 4.213 9 C 0.148 3.852 10 O -0.292 6.292 11 C 0.087 3.913 12 H 0.062 0.938 13 C -0.177 4.177 14 C 0.025 3.975 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.161 4.161 24 C -0.083 4.083 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.126 0.874 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.863 -0.056 6.634 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.016 4.016 4 C -0.196 4.196 5 C -0.197 4.197 6 C -0.128 4.128 7 C -0.094 4.094 8 C -0.232 4.232 9 C 0.101 3.899 10 O -0.205 6.205 11 C 0.031 3.969 12 H 0.080 0.920 13 C -0.235 4.235 14 C -0.012 4.012 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.180 4.180 24 C -0.101 4.101 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.516 -0.224 6.610 21.556 hybrid contribution 0.121 -0.091 -1.008 1.019 sum -20.395 -0.314 5.602 21.152 Atomic orbital electron populations 1.21913 0.96079 1.01360 1.01961 1.21663 0.95590 0.95931 1.02148 1.19346 0.91042 0.95538 0.95666 1.21937 1.00483 1.00186 0.97011 1.21946 1.00455 1.00248 0.97079 1.19512 0.94251 0.93109 1.05971 1.20655 0.93182 0.97279 0.98246 1.21339 0.94993 0.97753 1.09128 1.19244 0.84209 0.93666 0.92815 1.86275 1.14314 1.34058 1.85820 1.22849 0.97093 0.82130 0.94806 0.92037 1.22411 1.01305 1.01338 0.98402 1.19266 0.87666 0.98270 0.95948 1.21127 0.92600 1.43424 0.97981 0.92615 1.24981 0.95322 0.95677 0.98393 1.69951 0.97365 1.49215 1.37145 0.86580 0.77681 0.78959 0.84775 1.20679 1.21169 1.19807 1.20458 0.93635 0.96626 1.07279 1.20861 0.92904 0.97663 0.98673 0.92512 0.92478 0.93049 0.91635 0.91698 0.92676 0.92449 0.92644 0.92534 0.92450 0.92642 0.86665 0.85399 0.91452 0.93304 0.91955 0.94423 0.95308 0.92952 0.85569 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.21 37.16 0.34 -0.84 16 2 C -0.12 -1.06 3.65 -26.73 -0.10 -1.15 16 3 C -0.02 -0.16 0.63 -155.66 -0.10 -0.26 16 4 C -0.14 -1.27 7.93 37.16 0.29 -0.98 16 5 C -0.14 -1.35 7.93 37.16 0.29 -1.06 16 6 C -0.13 -1.68 4.76 -104.60 -0.50 -2.18 16 7 C -0.08 -1.06 8.70 -39.61 -0.34 -1.40 16 8 C -0.21 -3.52 8.24 -39.43 -0.32 -3.85 16 9 C 0.15 2.77 6.60 -39.22 -0.26 2.51 16 10 O -0.29 -6.39 9.55 -19.43 -0.19 -6.58 16 11 C 0.09 1.83 2.17 -26.73 -0.06 1.78 16 12 H 0.06 1.27 6.31 -51.93 -0.33 0.95 16 13 C -0.18 -3.07 9.17 37.16 0.34 -2.73 16 14 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 15 C -0.51 -14.70 8.88 -34.44 -0.31 -15.00 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 19 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.16 -2.70 9.99 -39.43 -0.39 -3.09 16 24 C -0.08 -1.16 8.97 -39.61 -0.36 -1.51 16 25 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 26 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 29 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 30 H 0.05 0.50 7.38 -51.93 -0.38 0.12 16 31 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 35 H 0.05 0.54 7.38 -51.93 -0.38 0.15 16 36 H 0.12 1.37 7.09 -52.48 -0.37 1.00 16 37 H 0.13 2.04 5.43 -52.49 -0.28 1.76 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.75 6.91 -51.93 -0.36 0.40 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 45 H 0.12 1.44 5.89 -52.48 -0.31 1.13 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -30.45 348.91 -8.36 -38.81 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.46 Total: -0.62 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -1.69 Total: -27.68 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.19 Total: -6.58 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.45 -8.36 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.650 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds