Wall clock time and date at job start Thu Apr 9 2020 14:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46815 * 2 1 4 4 C 1.52996 * 109.47301 * 60.00058 * 3 2 1 5 5 C 1.52998 * 109.47161 * 300.00088 * 3 2 1 6 6 C 1.50699 * 109.46902 * 180.02562 * 3 2 1 7 7 C 1.38264 * 119.94400 * 180.02562 * 6 3 2 8 8 C 1.38146 * 120.05629 * 180.02562 * 7 6 3 9 9 C 1.38731 * 119.94313 * 359.97438 * 8 7 6 10 10 O 1.35900 * 120.05604 * 180.02562 * 9 8 7 11 11 C 1.42907 * 116.99926 * 354.56595 * 10 9 8 12 12 H 1.09005 * 109.47141 * 324.91775 * 11 10 9 13 13 C 1.53000 * 109.47165 * 84.91775 * 11 10 9 14 14 C 1.53000 * 109.46818 * 204.91831 * 11 10 9 15 15 C 1.50699 * 109.47059 * 65.00035 * 14 11 10 16 16 H 1.08002 * 120.00618 * 359.97438 * 15 14 11 17 17 C 1.37880 * 120.00050 * 179.97438 * 15 14 11 18 18 N 1.31518 * 120.00041 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00312 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46887 * 90.00356 * 19 17 15 21 21 H 1.48503 * 109.47194 * 210.00279 * 19 17 15 22 22 H 1.48501 * 109.46990 * 330.00392 * 19 17 15 23 23 C 1.38732 * 119.88951 * 0.27748 * 9 8 7 24 24 C 1.38144 * 119.93940 * 359.47257 * 23 9 8 25 25 H 1.09002 * 109.47141 * 299.99946 * 1 2 3 26 26 H 1.09000 * 109.47171 * 60.00159 * 1 2 3 27 27 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47141 * 240.00054 * 2 1 3 29 29 H 1.08993 * 109.47111 * 120.00185 * 2 1 3 30 30 H 1.09002 * 109.47326 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.47222 * 299.99756 * 4 3 2 32 32 H 1.09000 * 109.47186 * 59.99852 * 4 3 2 33 33 H 1.09002 * 109.47065 * 300.00112 * 5 3 2 34 34 H 1.08997 * 109.47159 * 59.99923 * 5 3 2 35 35 H 1.08998 * 109.46969 * 180.02562 * 5 3 2 36 36 H 1.08005 * 119.97301 * 359.97438 * 7 6 3 37 37 H 1.07999 * 120.02654 * 179.97438 * 8 7 6 38 38 H 1.09006 * 109.46903 * 180.02562 * 13 11 10 39 39 H 1.08997 * 109.47024 * 300.00049 * 13 11 10 40 40 H 1.08995 * 109.46746 * 60.00421 * 13 11 10 41 41 H 1.09005 * 109.46980 * 184.99309 * 14 11 10 42 42 H 1.08993 * 109.47581 * 304.99458 * 14 11 10 43 43 H 0.97000 * 120.00322 * 179.97438 * 18 17 15 44 44 H 1.07998 * 120.02916 * 179.71674 * 23 9 8 45 45 H 1.08004 * 119.96964 * 180.23003 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5299 2.1638 -1.2492 6 6 3.5469 1.4426 -0.0006 7 6 4.2371 2.6406 -0.0002 8 6 5.6185 2.6434 -0.0013 9 6 6.3134 1.4426 -0.0023 10 8 7.6724 1.4426 -0.0029 11 6 8.3211 2.7103 -0.1230 12 1 7.7364 3.3571 -0.7772 13 6 8.4393 3.3557 1.2592 14 6 9.7180 2.5142 -0.7155 15 6 9.5974 1.9929 -2.1244 16 1 8.6220 1.8185 -2.5541 17 6 10.7323 1.7386 -2.8649 18 7 11.9201 1.9505 -2.3416 19 14 10.5829 1.0918 -4.6110 20 1 10.5215 2.2338 -5.5582 21 1 11.7627 0.2479 -4.9289 22 1 9.3458 0.2797 -4.7338 23 6 5.6186 0.2418 -0.0080 24 6 4.2372 0.2445 -0.0017 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8936 3.1913 1.2494 31 1 0.4399 2.1638 1.2492 32 1 1.8933 1.6500 2.1392 33 1 1.8933 1.6499 -2.1392 34 1 0.4399 2.1637 -1.2492 35 1 1.8936 3.1913 -1.2494 36 1 3.6957 3.5752 0.0002 37 1 6.1571 3.5795 -0.0014 38 1 8.9337 4.3228 1.1674 39 1 7.4442 3.4953 1.6813 40 1 9.0240 2.7089 1.9132 41 1 10.2458 3.4678 -0.7250 42 1 10.2726 1.7980 -0.1094 43 1 12.7186 1.7712 -2.8623 44 1 6.1572 -0.6942 -0.0135 45 1 3.6958 -0.6900 -0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695841162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:38 Heat of formation + Delta-G solvation = -59.254744 kcal Electronic energy + Delta-G solvation = -21549.697926 eV Core-core repulsion = 18530.769112 eV Total energy + Delta-G solvation = -3018.928815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32886 -39.76964 -37.14202 -35.38189 -33.48060 -32.12817 -31.29489 -29.44164 -29.38683 -28.07735 -25.58353 -25.21129 -23.98393 -22.68781 -21.57061 -19.59809 -19.18822 -18.54556 -17.13810 -16.65935 -16.35983 -16.01005 -15.59589 -15.51713 -15.15867 -14.74636 -14.40671 -14.28079 -14.23049 -13.82670 -13.73161 -13.50957 -13.38382 -13.08493 -12.81025 -12.75270 -12.68366 -12.59539 -12.54860 -12.36060 -12.03972 -11.90206 -11.73266 -11.40305 -11.39266 -11.33995 -11.07707 -11.01723 -10.60839 -9.87223 -8.86245 -8.23415 -6.32661 0.46146 0.57303 1.36074 1.37748 1.49173 2.38326 2.49996 2.88330 3.10974 3.74709 3.80339 3.95997 4.08885 4.13427 4.13933 4.22254 4.38293 4.43183 4.47767 4.58055 4.58944 4.63809 4.76597 4.79944 4.87977 4.90039 4.99027 5.00649 5.09513 5.14342 5.16883 5.20235 5.22695 5.23320 5.31764 5.35255 5.44549 5.49904 5.55834 5.57973 5.63171 5.73841 5.79829 6.00911 6.17048 6.73117 6.79742 7.34869 8.88394 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.003892 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.012224 B = 7192.383482 C = 7841.560649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.015 4.015 4 C -0.138 4.138 5 C -0.140 4.140 6 C -0.117 4.117 7 C -0.075 4.075 8 C -0.219 4.219 9 C 0.109 3.891 10 O -0.325 6.325 11 C 0.095 3.905 12 H 0.063 0.937 13 C -0.166 4.166 14 C 0.028 3.972 15 C -0.532 4.532 16 H 0.048 0.952 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.272 1.272 23 C -0.177 4.177 24 C -0.081 4.081 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.025 0.975 42 H -0.002 1.002 43 H 0.265 0.735 44 H 0.121 0.879 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.871 0.179 6.296 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.015 4.015 4 C -0.195 4.195 5 C -0.197 4.197 6 C -0.117 4.117 7 C -0.093 4.093 8 C -0.238 4.238 9 C 0.063 3.937 10 O -0.239 6.239 11 C 0.040 3.960 12 H 0.081 0.919 13 C -0.223 4.223 14 C -0.009 4.009 15 C -0.570 4.570 16 H 0.067 0.933 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.196 1.196 23 C -0.196 4.196 24 C -0.098 4.098 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.148 0.852 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.016 0.984 43 H 0.074 0.926 44 H 0.139 0.861 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.542 0.017 6.280 24.366 hybrid contribution 0.942 -0.197 -0.878 1.303 sum -22.600 -0.180 5.402 23.238 Atomic orbital electron populations 1.21889 0.94610 1.02015 1.02489 1.21671 0.96902 0.94999 1.01915 1.19424 0.88674 0.96717 0.96686 1.21933 1.01689 0.99905 0.95964 1.21953 1.01733 0.99914 0.96114 1.19960 0.96200 0.92388 1.03180 1.20962 0.92261 0.98854 0.97217 1.21441 0.96119 0.96947 1.09274 1.19549 0.82987 0.95336 0.95803 1.86177 1.16476 1.34163 1.87085 1.22548 0.94306 0.82479 0.96707 0.91889 1.22301 1.02679 1.01391 0.95971 1.19117 0.90462 0.96458 0.94824 1.21440 0.92432 1.43722 0.99409 0.93323 1.25869 0.94919 0.95804 1.02832 1.70063 0.98097 1.50029 1.38896 0.85515 0.77748 0.78664 0.79567 1.19285 1.20356 1.19625 1.20649 0.94932 0.95978 1.08000 1.21155 0.91759 0.99306 0.97618 0.91799 0.92075 0.92456 0.92139 0.91723 0.92577 0.90603 0.93105 0.93565 0.90514 0.92632 0.84101 0.85249 0.90011 0.91126 0.92572 0.95640 0.98392 0.92613 0.86100 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.21 71.98 0.66 -1.14 16 2 C -0.12 -1.81 3.65 30.60 0.11 -1.69 16 3 C -0.02 -0.26 0.63 -52.93 -0.03 -0.29 16 4 C -0.14 -2.06 7.93 71.98 0.57 -1.49 16 5 C -0.14 -2.27 7.93 71.98 0.57 -1.70 16 6 C -0.12 -2.82 4.76 -19.85 -0.09 -2.92 16 7 C -0.08 -1.96 8.70 22.25 0.19 -1.77 16 8 C -0.22 -7.13 8.24 22.37 0.18 -6.94 16 9 C 0.11 4.17 6.60 22.51 0.15 4.32 16 10 O -0.32 -14.81 9.55 -92.42 -0.88 -15.70 16 11 C 0.10 4.16 2.17 30.59 0.07 4.22 16 12 H 0.06 2.67 6.31 -2.38 -0.02 2.66 16 13 C -0.17 -5.78 9.17 71.98 0.66 -5.12 16 14 C 0.03 1.53 4.68 29.85 0.14 1.67 16 15 C -0.53 -31.46 8.88 25.60 0.23 -31.24 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 17 C 0.00 0.21 5.46 84.65 0.46 0.68 16 18 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 19 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 C -0.18 -5.99 9.99 22.37 0.22 -5.77 16 24 C -0.08 -2.15 8.97 22.25 0.20 -1.95 16 25 H 0.06 0.67 6.43 -2.39 -0.02 0.66 16 26 H 0.06 0.68 6.43 -2.39 -0.02 0.66 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.99 7.51 -2.39 -0.02 0.98 16 29 H 0.06 1.00 7.51 -2.39 -0.02 0.98 16 30 H 0.06 0.84 7.38 -2.39 -0.02 0.82 16 31 H 0.08 0.88 6.43 -2.38 -0.02 0.86 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.96 6.43 -2.39 -0.02 0.95 16 35 H 0.05 0.90 7.38 -2.39 -0.02 0.88 16 36 H 0.14 2.93 7.09 -2.91 -0.02 2.91 16 37 H 0.13 4.06 5.43 -2.91 -0.02 4.05 16 38 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 39 H 0.07 2.13 6.91 -2.39 -0.02 2.12 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 43 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 44 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.15 3.16 5.89 -2.91 -0.02 3.14 16 Total: -1.00 -67.22 348.91 6.67 -60.55 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.95 Total: 15.42 kcal Atomic # 6 Polarization: -55.44 SS G_CDS: 4.29 Total: -51.14 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.28 Total: -56.95 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.88 Total: -15.70 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -67.22 6.67 -60.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695841162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.294 kcal (2) G-P(sol) polarization free energy of solvation -67.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds