Wall clock time and date at job start Thu Apr 9 2020 14:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38171 * 120.02301 * 2 1 4 4 C 1.38243 * 120.05277 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.94352 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47044 * 60.00207 * 5 4 3 7 7 C 1.53002 * 109.46980 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.47058 * 300.00013 * 5 4 3 9 9 C 1.38291 * 120.11299 * 0.02562 * 4 3 2 10 10 C 1.38128 * 120.05385 * 359.68392 * 9 4 3 11 11 C 1.38708 * 120.03059 * 180.02562 * 2 1 3 12 12 O 1.35903 * 120.05359 * 359.97438 * 11 2 1 13 13 C 1.42902 * 116.99398 * 185.68246 * 12 11 2 14 14 H 1.09000 * 109.47245 * 35.19537 * 13 12 11 15 15 C 1.52995 * 109.47333 * 275.18745 * 13 12 11 16 16 C 1.53007 * 109.46406 * 155.19116 * 13 12 11 17 17 C 1.50703 * 109.47335 * 294.99965 * 16 13 12 18 18 H 1.08007 * 119.99596 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00065 * 179.72743 * 17 16 13 20 20 N 1.31513 * 119.99974 * 180.27114 * 19 17 16 21 21 Si 1.86796 * 120.00013 * 0.27630 * 19 17 16 22 22 H 1.48501 * 109.47312 * 89.99932 * 21 19 17 23 23 H 1.48497 * 109.46933 * 210.00178 * 21 19 17 24 24 H 1.48504 * 109.47221 * 329.99970 * 21 19 17 25 25 H 1.09005 * 109.46716 * 269.97602 * 1 2 3 26 26 H 1.08993 * 109.47417 * 29.98084 * 1 2 3 27 27 H 1.09005 * 109.47092 * 149.98144 * 1 2 3 28 28 H 1.07999 * 119.97178 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47457 * 60.00311 * 6 5 4 30 30 H 1.09002 * 109.47314 * 180.02562 * 6 5 4 31 31 H 1.09003 * 109.47227 * 299.99994 * 6 5 4 32 32 H 1.08997 * 109.46975 * 59.99945 * 7 5 4 33 33 H 1.09002 * 109.46700 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47216 * 300.00122 * 7 5 4 35 35 H 1.09003 * 109.46948 * 60.00168 * 8 5 4 36 36 H 1.09002 * 109.47068 * 179.97438 * 8 5 4 37 37 H 1.08997 * 109.47253 * 300.00273 * 8 5 4 38 38 H 1.07996 * 119.97501 * 179.97438 * 9 4 3 39 39 H 1.08001 * 120.02634 * 180.32283 * 10 9 4 40 40 H 1.09000 * 109.47602 * 300.00574 * 15 13 12 41 41 H 1.09000 * 109.47082 * 60.00461 * 15 13 12 42 42 H 1.09002 * 109.46969 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.46559 * 174.99994 * 16 13 12 44 44 H 1.08996 * 109.47455 * 55.00070 * 16 13 12 45 45 H 0.96998 * 120.00340 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0005 5 6 4.3323 2.5033 0.0001 6 6 3.9620 3.3041 1.2500 7 6 5.8370 2.2259 -0.0014 8 6 3.9610 3.3058 -1.2485 9 6 4.2752 0.0011 -0.0016 10 6 3.5887 -1.1975 0.0045 11 6 2.2012 -1.2009 -0.0005 12 8 1.5234 -2.3788 -0.0005 13 6 2.2982 -3.5730 0.1250 14 1 3.1466 -3.3881 0.7839 15 6 2.8065 -3.9985 -1.2539 16 6 1.4284 -4.6857 0.7135 17 6 1.0286 -4.3201 2.1198 18 1 1.3613 -3.3872 2.5506 19 6 0.2330 -5.1737 2.8543 20 7 -0.1202 -4.8522 4.0796 21 14 -0.3429 -6.7868 2.1091 22 1 0.6475 -7.8520 2.4086 23 1 -1.6590 -7.1576 2.6882 24 1 -0.4750 -6.6332 0.6379 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6583 2.1316 0.0004 29 1 4.2266 2.7324 2.1395 30 1 4.5053 4.2491 1.2502 31 1 2.8901 3.5017 1.2506 32 1 6.1005 1.6555 -0.8920 33 1 6.3806 3.1708 -0.0005 34 1 6.1019 1.6539 0.8879 35 1 2.8890 3.5034 -1.2479 36 1 4.5043 4.2508 -1.2478 37 1 4.2248 2.7353 -2.1390 38 1 5.3552 0.0043 -0.0024 39 1 4.1315 -2.1311 0.0089 40 1 1.9581 -4.1834 -1.9128 41 1 3.4262 -3.2058 -1.6732 42 1 3.3971 -4.9096 -1.1582 43 1 1.9918 -5.6186 0.7269 44 1 0.5345 -4.8098 0.1024 45 1 -0.6802 -5.4525 4.5963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695844671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:41 Heat of formation + Delta-G solvation = -43.624091 kcal Electronic energy + Delta-G solvation = -21854.111183 eV Core-core repulsion = 18835.860165 eV Total energy + Delta-G solvation = -3018.251019 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13833 -38.34206 -35.77410 -33.33917 -32.37743 -31.51522 -29.00688 -28.06952 -27.74204 -27.28130 -25.91754 -23.47515 -22.35886 -21.63281 -19.83235 -18.67729 -17.60304 -16.73400 -15.72299 -15.51322 -14.75817 -14.48968 -14.30514 -14.19681 -13.65987 -13.38057 -13.05103 -12.93893 -12.80068 -12.49566 -12.42693 -12.28411 -11.89509 -11.87021 -11.81931 -11.75189 -11.68821 -11.61906 -11.24582 -10.98668 -10.78694 -10.66828 -10.48761 -10.36296 -10.16892 -9.70485 -9.54343 -9.21033 -8.54273 -8.44727 -7.48108 -6.02854 -4.00694 1.67512 1.81967 3.29296 3.37663 3.40450 3.90242 4.09515 4.44675 4.66081 4.76326 4.98150 5.15474 5.24797 5.30397 5.31294 5.47400 5.51731 5.54144 5.55791 5.61351 5.70134 5.73689 5.78618 5.80932 5.81844 5.88004 5.98093 5.99963 6.06045 6.14666 6.17621 6.21026 6.24706 6.27871 6.41429 6.53907 6.60929 6.75139 6.86494 6.92150 6.99215 7.15326 7.29550 7.73397 8.16145 8.53259 9.02550 9.57811 11.10732 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.026393 B = 0.004135 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.627684 B = 6769.758430 C = 7008.182191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.122 4.122 3 C -0.080 4.080 4 C -0.122 4.122 5 C -0.022 4.022 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.137 4.137 9 C -0.088 4.088 10 C -0.210 4.210 11 C 0.146 3.854 12 O -0.288 6.288 13 C 0.096 3.904 14 H 0.067 0.933 15 C -0.180 4.180 16 C -0.010 4.010 17 C -0.513 4.513 18 H 0.073 0.927 19 C 0.068 3.932 20 N -0.902 5.902 21 Si 0.876 3.124 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.265 1.265 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.031 0.969 44 H 0.028 0.972 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.955 13.580 -10.794 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C -0.098 4.098 4 C -0.122 4.122 5 C -0.022 4.022 6 C -0.195 4.195 7 C -0.200 4.200 8 C -0.194 4.194 9 C -0.106 4.106 10 C -0.229 4.229 11 C 0.099 3.901 12 O -0.201 6.201 13 C 0.040 3.960 14 H 0.085 0.915 15 C -0.237 4.237 16 C -0.048 4.048 17 C -0.551 4.551 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.541 5.541 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.190 1.190 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.137 0.863 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.632 13.459 -10.655 19.214 hybrid contribution -0.104 -1.056 -0.153 1.072 sum 8.527 12.403 -10.808 18.530 Atomic orbital electron populations 1.20565 0.90738 1.02059 1.02521 1.19243 0.96451 0.90424 1.06106 1.20559 0.93291 0.96396 0.99561 1.19491 0.93317 0.93921 1.05508 1.19355 0.94584 0.92552 0.95682 1.21892 1.01452 0.99121 0.97081 1.21948 0.94702 1.01357 1.01976 1.21884 1.01404 0.99112 0.97002 1.20847 0.99425 0.91335 0.98991 1.21317 0.93457 0.99144 1.08945 1.18993 0.90360 0.86793 0.93925 1.86227 1.36011 1.11854 1.85962 1.22536 0.94912 0.83870 0.94713 0.91522 1.22447 1.01488 1.01407 0.98398 1.19720 0.95454 0.92092 0.97495 1.21007 1.31385 1.06685 0.96055 0.90909 1.24986 0.95635 0.98024 0.94692 1.69910 1.37076 1.37362 1.09711 0.86836 0.78397 0.84298 0.80111 1.20301 1.21280 1.18979 0.91260 0.92566 0.91004 0.86251 0.92442 0.92813 0.92498 0.92414 0.92763 0.92282 0.92547 0.92814 0.92649 0.86122 0.85453 0.91996 0.92904 0.91471 0.95062 0.95403 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.79 36.01 0.35 -1.27 16 2 C -0.12 -2.07 5.89 -104.47 -0.62 -2.69 16 3 C -0.08 -1.16 8.36 -39.60 -0.33 -1.49 16 4 C -0.12 -1.65 4.76 -104.60 -0.50 -2.15 16 5 C -0.02 -0.23 0.85 -155.66 -0.13 -0.36 16 6 C -0.14 -1.40 8.29 37.16 0.31 -1.09 16 7 C -0.14 -1.35 7.13 37.16 0.26 -1.08 16 8 C -0.14 -1.29 8.28 37.16 0.31 -0.98 16 9 C -0.09 -1.26 8.97 -39.60 -0.36 -1.62 16 10 C -0.21 -3.50 8.24 -39.43 -0.32 -3.82 16 11 C 0.15 2.75 6.57 -39.22 -0.26 2.49 16 12 O -0.29 -6.13 8.60 -19.44 -0.17 -6.29 16 13 C 0.10 1.94 2.17 -26.73 -0.06 1.88 16 14 H 0.07 1.35 6.32 -51.93 -0.33 1.02 16 15 C -0.18 -2.91 9.17 37.16 0.34 -2.57 16 16 C -0.01 -0.25 3.75 -27.88 -0.10 -0.35 16 17 C -0.51 -14.75 9.43 -34.44 -0.32 -15.08 16 18 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 21 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.07 1.23 7.53 -51.93 -0.39 0.83 16 28 H 0.12 1.47 7.09 -52.49 -0.37 1.10 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.57 7.38 -51.93 -0.38 0.19 16 32 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.57 7.51 -51.93 -0.39 0.18 16 35 H 0.06 0.53 7.38 -51.93 -0.38 0.14 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.12 1.46 5.89 -52.49 -0.31 1.15 16 39 H 0.13 2.02 5.43 -52.49 -0.28 1.73 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.77 6.90 -51.93 -0.36 0.42 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.03 0.71 7.58 -51.93 -0.39 0.32 16 44 H 0.03 0.68 7.19 -51.93 -0.37 0.30 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 351.14 15.07 5.29 5.29 Total: -1.00 -31.15 351.14 -8.04 -39.19 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.75 Total: 0.42 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -1.53 Total: -28.30 kcal Atomic # 7 Polarization: -28.03 SS G_CDS: 0.77 Total: -27.26 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.17 Total: -6.29 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.15 -8.04 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.431 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds